Wall clock time and date at job start Tue Mar 31 2020 14:06:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.39646 * 120.07411 * 2 1
4 4 C 1.47724 * 120.14981 * 0.04252 * 3 2 1
5 5 O 1.21465 * 120.00479 * 5.21469 * 4 3 2
6 6 O 1.34717 * 120.00153 * 185.21877 * 4 3 2
7 7 C 1.39610 * 119.70167 * 180.02562 * 3 2 1
8 8 C 1.37969 * 119.84661 * 359.72443 * 7 3 2
9 9 C 1.38348 * 120.14660 * 0.55032 * 8 7 3
10 10 C 1.37919 * 120.07702 * 180.02562 * 2 1 3
11 11 S 1.76202 * 119.92422 * 0.02562 * 10 2 1
12 12 O 1.42095 * 106.40411 * 48.51599 * 11 10 2
13 13 O 1.42105 * 106.40195 * 181.43963 * 11 10 2
14 14 N 1.65608 * 107.21828 * 294.97477 * 11 10 2
15 15 C 1.36934 * 119.99698 * 90.00205 * 14 11 10
16 16 H 1.08003 * 119.99508 * 230.73606 * 15 14 11
17 17 C 1.38811 * 120.00299 * 50.73503 * 15 14 11
18 18 N 1.31616 * 119.99848 * 21.17102 * 17 15 14
19 19 Si 1.86795 * 119.99967 * 201.17201 * 17 15 14
20 20 H 1.48497 * 109.47573 * 60.00212 * 19 17 15
21 21 H 1.48504 * 109.47183 * 179.97438 * 19 17 15
22 22 H 1.48504 * 109.47203 * 299.99731 * 19 17 15
23 23 C 1.46496 * 119.99796 * 270.00229 * 14 11 10
24 24 C 1.53003 * 117.49405 * 188.79578 * 23 14 11
25 25 C 1.52995 * 60.00165 * 252.51143 * 24 23 14
26 26 H 1.09007 * 109.46873 * 275.57789 * 1 2 3
27 27 H 1.09000 * 109.47060 * 35.57815 * 1 2 3
28 28 H 1.09000 * 109.47229 * 155.58382 * 1 2 3
29 29 H 0.96690 * 117.00197 * 179.97438 * 6 4 3
30 30 H 1.08000 * 120.08146 * 179.97438 * 7 3 2
31 31 H 1.07996 * 119.92710 * 180.29531 * 8 7 3
32 32 H 1.08000 * 119.84736 * 179.72934 * 9 8 7
33 33 H 0.96999 * 119.99942 * 184.70212 * 18 17 15
34 34 H 1.08996 * 115.55638 * 334.50319 * 23 14 11
35 35 H 1.08992 * 117.50037 * 0.02562 * 24 23 14
36 36 H 1.09003 * 117.49770 * 145.02189 * 24 23 14
37 37 H 1.09006 * 117.50029 * 252.51376 * 25 24 23
38 38 H 1.09003 * 117.49979 * 107.48835 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2068 1.2085 0.0000
4 6 1.4732 2.4907 0.0009
5 8 0.2624 2.4976 0.0973
6 8 2.1471 3.6524 -0.1052
7 6 3.6029 1.1994 -0.0005
8 6 4.2817 -0.0017 0.0047
9 6 3.5821 -1.1953 -0.0010
10 6 2.1982 -1.1935 -0.0005
11 16 1.3173 -2.7195 -0.0019
12 8 0.3350 -2.6148 -1.0234
13 8 2.2968 -3.7484 0.0320
14 7 0.4932 -2.8110 1.4317
15 6 -0.7783 -2.3111 1.5236
16 1 -1.0351 -1.6323 2.3234
17 6 -1.7371 -2.6767 0.5887
18 7 -1.5844 -3.7790 -0.1140
19 14 -3.2441 -1.6041 0.3281
20 1 -2.8185 -0.2492 -0.1057
21 1 -4.1078 -2.2094 -0.7173
22 1 -4.0041 -1.5007 1.5998
23 6 1.1245 -3.4269 2.6014
24 6 0.2480 -3.6686 3.8319
25 6 1.3004 -2.5582 3.8486
26 1 -0.3633 0.0999 1.0229
27 1 -0.3633 0.8358 -0.5979
28 1 -0.3634 -0.9357 -0.4248
29 1 1.6238 4.4654 -0.1003
30 1 4.1503 2.1304 -0.0010
31 1 5.3617 -0.0102 0.0091
32 1 4.1185 -2.1327 -0.0013
33 1 -2.2183 -3.9994 -0.8143
34 1 1.9017 -4.1598 2.3849
35 1 -0.7984 -3.3698 3.7710
36 1 0.4483 -4.5608 4.4252
37 1 2.1932 -2.7199 4.4527
38 1 0.9464 -1.5284 3.7986
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000738275864.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:06:50
Heat of formation + Delta-G solvation = -108.828193 kcal
Electronic energy + Delta-G solvation = -27102.285108 eV
Core-core repulsion = 23230.820822 eV
Total energy + Delta-G solvation = -3871.464286 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.086 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.60601 -39.70376 -38.80776 -37.84308 -37.16488 -36.19554 -35.12188 -33.67172
-32.58489 -32.38951 -28.31305 -26.75377 -25.43590 -23.72838 -22.96943 -22.28470
-21.89022 -20.73092 -19.61874 -18.68725 -18.14205 -17.73909 -17.21308 -16.99793
-16.80394 -16.67045 -16.32397 -15.93066 -15.41262 -15.11190 -14.79738 -14.59135
-14.17632 -14.07150 -13.60176 -13.53004 -13.21175 -13.11331 -13.02570 -12.96871
-12.67095 -12.52947 -12.49503 -12.33190 -12.18412 -12.10704 -12.02221 -11.62074
-11.42070 -10.99242 -10.91533 -10.48051 -10.33970 -9.89106 -9.31322 -8.39839
-6.10353 -0.46941 -0.03492 0.14541 1.40760 1.46702 1.54103 1.57620
1.99049 2.31939 2.49429 2.80808 3.01218 3.21240 3.46108 3.72999
3.84982 3.88164 4.05499 4.14453 4.21993 4.32797 4.41427 4.53136
4.65551 4.72177 4.74440 4.87509 4.92627 4.96680 5.10368 5.18655
5.28013 5.35448 5.45708 5.47393 5.56594 5.66209 5.79600 5.82428
6.29371 6.96096 7.01509 7.44247 8.63228
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.012057 B = 0.007179 C = 0.005750
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2321.677024 B = 3899.327409 C = 4868.483926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.070 3.930
3 C -0.180 4.180
4 C 0.532 3.468
5 O -0.533 6.533
6 O -0.498 6.498
7 C -0.010 4.010
8 C -0.155 4.155
9 C -0.010 4.010
10 C -0.704 4.704
11 S 2.575 3.425
12 O -0.977 6.977
13 O -1.037 7.037
14 N -0.798 5.798
15 C -0.271 4.271
16 H 0.092 0.908
17 C 0.027 3.973
18 N -0.819 5.819
19 Si 0.944 3.056
20 H -0.258 1.258
21 H -0.286 1.286
22 H -0.250 1.250
23 C 0.055 3.945
24 C -0.153 4.153
25 C -0.184 4.184
26 H 0.091 0.909
27 H 0.081 0.919
28 H 0.097 0.903
29 H 0.433 0.567
30 H 0.178 0.822
31 H 0.179 0.821
32 H 0.142 0.858
33 H 0.277 0.723
34 H 0.113 0.887
35 H 0.094 0.906
36 H 0.111 0.889
37 H 0.115 0.885
38 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.891 11.118 4.656 14.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.069 3.931
3 C -0.182 4.182
4 C 0.378 3.622
5 O -0.425 6.425
6 O -0.313 6.313
7 C -0.027 4.027
8 C -0.173 4.173
9 C -0.029 4.029
10 C -0.785 4.785
11 S 2.678 3.322
12 O -0.966 6.966
13 O -1.027 7.027
14 N -0.621 5.621
15 C -0.417 4.417
16 H 0.109 0.891
17 C -0.187 4.187
18 N -0.456 5.456
19 Si 0.766 3.234
20 H -0.182 1.182
21 H -0.212 1.212
22 H -0.174 1.174
23 C -0.053 4.053
24 C -0.193 4.193
25 C -0.224 4.224
26 H 0.109 0.891
27 H 0.100 0.900
28 H 0.115 0.885
29 H 0.296 0.704
30 H 0.195 0.805
31 H 0.196 0.804
32 H 0.160 0.840
33 H 0.087 0.913
34 H 0.131 0.869
35 H 0.113 0.887
36 H 0.129 0.871
37 H 0.134 0.866
38 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 8.980 10.029 3.763 13.978
hybrid contribution -1.001 1.168 -0.484 1.612
sum 7.979 11.197 3.280 14.135
Atomic orbital electron populations
1.22105 0.90101 1.05826 1.04385 1.19721 0.96483 0.90793 0.86115
1.19221 0.95235 0.89702 1.14008 1.20696 0.84931 0.84745 0.71844
1.90873 1.16424 1.87983 1.47231 1.84472 1.44956 1.16904 1.84933
1.21989 0.91454 1.00503 0.88802 1.21667 1.02295 0.90740 1.02584
1.21489 0.91725 1.00834 0.88854 1.31956 1.07467 1.22305 1.16722
1.09561 0.71752 0.74428 0.76452 1.93346 1.57837 1.86233 1.59146
1.93233 1.63523 1.57801 1.88100 1.52194 1.18841 1.65567 1.25451
1.19054 0.83155 1.24251 1.15219 0.89074 1.26332 1.00633 0.94751
0.96975 1.69929 1.37172 1.20440 1.18077 0.85767 0.78569 0.80016
0.79031 1.18207 1.21181 1.17434 1.21626 1.00910 1.00169 0.82611
1.23130 0.97409 1.00360 0.98353 1.23356 1.01493 0.96535 1.01011
0.89113 0.90018 0.88491 0.70444 0.80484 0.80411 0.84032 0.91341
0.86892 0.88712 0.87069 0.86649 0.89570
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 25.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -7.54 6.09 71.24 0.43 -7.10 16
2 C 0.07 2.88 5.91 -19.60 -0.12 2.76 16
3 C -0.18 -5.92 5.87 -20.10 -0.12 -6.04 16
4 C 0.53 15.86 8.21 70.33 0.58 16.44 16
5 O -0.53 -19.34 14.09 19.95 0.28 -19.06 16
6 O -0.50 -9.48 12.69 -56.27 -0.71 -10.20 16
7 C -0.01 -0.24 9.62 22.54 0.22 -0.02 16
8 C -0.15 -3.88 10.03 22.23 0.22 -3.66 16
9 C -0.01 -0.34 9.55 22.33 0.21 -0.13 16
10 C -0.70 -29.75 5.90 22.23 0.13 -29.61 16
11 S 2.57 130.04 4.94 -56.49 -0.28 129.76 16
12 O -0.98 -55.62 11.82 -128.00 -1.51 -57.13 16
13 O -1.04 -54.97 15.74 -128.00 -2.01 -56.99 16
14 N -0.80 -38.00 3.03 -322.94 -0.98 -38.97 16
15 C -0.27 -13.05 4.61 84.03 0.39 -12.67 16
16 H 0.09 4.13 7.67 -2.91 -0.02 4.10 16
17 C 0.03 1.40 3.38 84.86 0.29 1.69 16
18 N -0.82 -45.86 11.43 21.65 0.25 -45.61 16
19 Si 0.94 40.93 28.36 68.60 1.95 42.88 16
20 H -0.26 -11.14 6.85 99.48 0.68 -10.46 16
21 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16
22 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16
23 C 0.06 2.24 6.39 44.99 0.29 2.53 16
24 C -0.15 -5.24 9.84 30.59 0.30 -4.94 16
25 C -0.18 -5.92 10.27 30.59 0.31 -5.61 16
26 H 0.09 3.99 7.06 -2.38 -0.02 3.97 16
27 H 0.08 3.61 5.75 -2.39 -0.01 3.59 16
28 H 0.10 4.87 2.42 -2.39 -0.01 4.86 16
29 H 0.43 4.09 9.11 -74.06 -0.67 3.41 16
30 H 0.18 2.91 7.62 -2.91 -0.02 2.89 16
31 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16
32 H 0.14 4.70 7.32 -2.91 -0.02 4.67 16
33 H 0.28 15.00 8.32 -92.71 -0.77 14.23 16
34 H 0.11 4.63 7.37 -2.39 -0.02 4.61 16
35 H 0.09 3.52 7.04 -2.39 -0.02 3.50 16
36 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16
37 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16
38 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16
Total: -1.00 -72.22 321.00 0.55 -71.67
By element:
Atomic # 1 Polarization: 29.59 SS G_CDS: 0.43 Total: 30.02 kcal
Atomic # 6 Polarization: -49.50 SS G_CDS: 3.14 Total: -46.36 kcal
Atomic # 7 Polarization: -83.86 SS G_CDS: -0.73 Total: -84.59 kcal
Atomic # 8 Polarization: -139.42 SS G_CDS: -3.96 Total: -143.38 kcal
Atomic # 14 Polarization: 40.93 SS G_CDS: 1.95 Total: 42.88 kcal
Atomic # 16 Polarization: 130.04 SS G_CDS: -0.28 Total: 129.76 kcal
Total: -72.22 0.55 -71.67 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000738275864.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.156 kcal
(2) G-P(sol) polarization free energy of solvation -72.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds