Wall clock time and date at job start Tue Mar 31 2020 13:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 S 1.81402 * 109.47185 * 180.02562 * 18 16 15 20 20 C 1.81396 * 103.00320 * 180.02562 * 19 18 16 21 21 C 1.50694 * 109.47458 * 180.02562 * 20 19 18 22 22 O 1.20826 * 119.99606 * 359.97438 * 21 20 19 23 23 O 1.34229 * 120.00136 * 180.02562 * 21 20 19 24 24 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 25 25 C 1.38101 * 120.07425 * 359.95492 * 24 13 12 26 26 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 29 29 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 30 30 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 31 31 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 32 32 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 33 33 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 34 34 H 1.08995 * 109.46930 * 300.00290 * 20 19 18 35 35 H 1.09006 * 109.47120 * 59.99468 * 20 19 18 36 36 H 0.96698 * 116.99782 * 180.02562 * 23 21 20 37 37 H 1.07999 * 119.96503 * 179.97438 * 24 13 12 38 38 H 1.07992 * 120.03608 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 16 6.6082 -10.8334 2.2608 20 6 6.8214 -11.3466 3.9875 21 6 7.6321 -12.6159 4.0379 22 8 8.0253 -13.1227 3.0140 23 8 7.9165 -13.1841 5.2203 24 6 4.2024 -4.5970 -0.2043 25 6 3.4573 -3.4394 -0.0951 26 1 -0.4850 0.8400 0.0004 27 1 0.3579 -4.7892 -0.2301 28 1 1.6954 -6.8451 -0.4339 29 1 3.8358 -7.8149 -1.0361 30 1 5.3320 -6.8560 -0.9360 31 1 4.2983 -7.1684 1.6738 32 1 6.1753 -8.5817 2.9944 33 1 4.6787 -9.5401 2.8951 34 1 7.3405 -10.5623 4.5382 35 1 5.8442 -11.5210 4.4380 36 1 8.4396 -13.9972 5.2021 37 1 5.2812 -4.5470 -0.1945 38 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740305857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:00 Heat of formation + Delta-G solvation = -124.110562 kcal Electronic energy + Delta-G solvation = -22852.959846 eV Core-core repulsion = 18980.832867 eV Total energy + Delta-G solvation = -3872.126979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63943 -39.80966 -39.06051 -36.93113 -36.65053 -34.53626 -32.44091 -31.32587 -30.78911 -30.32568 -29.19588 -25.87864 -24.64965 -22.63781 -22.11345 -20.78194 -20.71353 -18.66431 -18.13853 -17.81383 -17.11261 -16.96891 -16.68603 -16.48607 -15.86288 -15.65609 -14.83927 -14.67237 -14.40241 -13.99844 -13.86370 -13.72121 -13.68278 -13.53667 -13.21318 -13.17077 -12.83948 -12.60501 -12.08845 -12.04348 -11.72404 -11.45048 -11.17500 -11.00753 -10.85240 -10.76901 -10.53816 -10.37001 -10.12937 -9.48539 -9.11552 -8.95131 -8.34613 -8.03908 -7.38751 -6.57171 -4.16268 0.73186 1.64998 1.93629 2.02938 2.07293 2.44503 2.54090 3.05207 3.06629 3.10135 3.24228 3.86751 4.34433 4.38866 4.54060 4.58918 4.60856 4.72088 4.83859 4.96881 5.10606 5.18570 5.35735 5.60012 5.74132 5.84842 5.93733 6.06673 6.29004 6.35451 6.54125 6.74538 6.89803 7.07975 7.21037 7.29886 7.32072 7.40592 7.65828 7.87123 8.05812 8.87884 9.55308 10.60069 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.029223 B = 0.001723 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.927518 B =16249.989939 C =16584.893342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.195 4.195 12 C -0.054 4.054 13 C -0.217 4.217 14 C 0.180 3.820 15 N -0.716 5.716 16 C 0.527 3.473 17 O -0.525 6.525 18 C -0.147 4.147 19 S -0.100 6.100 20 C -0.129 4.129 21 C 0.498 3.502 22 O -0.491 6.491 23 O -0.513 6.513 24 C -0.050 4.050 25 C -0.237 4.237 26 H 0.272 0.728 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.403 0.597 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.416 0.584 37 H 0.108 0.892 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.460 -18.367 10.482 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.219 4.219 14 C 0.058 3.942 15 N -0.368 5.368 16 C 0.311 3.689 17 O -0.402 6.402 18 C -0.299 4.299 19 S 0.125 5.875 20 C -0.278 4.278 21 C 0.338 3.662 22 O -0.377 6.377 23 O -0.326 6.326 24 C -0.069 4.069 25 C -0.257 4.257 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.238 0.762 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.276 0.724 37 H 0.126 0.874 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.572 -18.812 8.588 23.697 hybrid contribution 0.112 1.287 1.659 2.103 sum 11.684 -17.524 10.247 23.422 Atomic orbital electron populations 1.70022 1.06018 1.28053 1.45129 1.25326 0.95868 0.98957 0.96268 0.85759 0.78734 0.79565 0.79277 1.19387 1.20178 1.19432 1.21314 0.91855 0.80704 1.53204 0.88934 1.83976 1.34535 1.11577 1.77359 1.19447 0.90330 0.88056 0.91589 1.20216 0.99699 0.90267 1.11300 1.20538 0.92745 0.96864 0.97107 1.19179 0.93547 0.93418 1.15718 1.20021 0.98776 0.92700 0.82699 1.46264 1.54426 1.25450 1.10674 1.19525 0.78870 0.81153 0.89355 1.90765 1.50546 1.59093 1.39749 1.23678 1.04933 1.00625 1.00622 1.88329 1.69641 1.27998 1.01560 1.23168 1.04225 0.97139 1.03233 1.22191 0.77893 0.84992 0.81124 1.90813 1.49336 1.62475 1.35047 1.84474 1.69551 1.44124 1.34473 1.20646 0.98395 0.91658 0.96172 1.21162 0.93772 0.98974 1.11773 0.91774 0.86344 0.86923 0.91298 0.91341 0.76232 0.86827 0.86816 0.85803 0.85789 0.72384 0.87363 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.25 13.67 55.48 0.76 -23.49 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 19.66 29.55 -169.99 -5.02 14.64 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.39 -10.53 9.49 30.89 0.29 -10.23 16 8 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 9 O -0.17 -4.67 9.76 0.05 0.00 -4.67 16 10 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 11 C -0.20 -3.80 9.99 -39.39 -0.39 -4.19 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 13 C -0.22 -3.28 5.25 -104.58 -0.55 -3.83 16 14 C 0.18 2.35 5.80 -5.19 -0.03 2.32 16 15 N -0.72 -7.85 5.55 -61.47 -0.34 -8.19 16 16 C 0.53 6.20 7.85 -10.99 -0.09 6.12 16 17 O -0.53 -8.46 15.86 5.56 0.09 -8.37 16 18 C -0.15 -1.14 6.42 36.01 0.23 -0.91 16 19 S -0.10 -1.02 20.01 -107.50 -2.15 -3.17 16 20 C -0.13 -0.76 6.53 36.00 0.24 -0.52 16 21 C 0.50 3.82 8.35 36.00 0.30 4.12 16 22 O -0.49 -5.75 16.62 -18.75 -0.31 -6.06 16 23 O -0.51 -2.48 13.42 -39.25 -0.53 -3.00 16 24 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 25 C -0.24 -4.75 9.17 -39.39 -0.36 -5.11 16 26 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.40 3.65 8.46 -40.82 -0.35 3.31 16 32 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.11 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.12 0.45 8.14 -51.92 -0.42 0.02 16 36 H 0.42 0.37 9.10 45.56 0.41 0.78 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.13 2.58 5.64 -52.49 -0.30 2.28 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -35.05 355.78 -7.06 -42.11 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.43 Total: 5.17 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.48 Total: -10.33 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.42 Total: -31.68 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.75 Total: -22.11 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.15 Total: -3.17 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.05 -7.06 -42.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740305857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.996 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds