Wall clock time and date at job start Tue Mar 31 2020 13:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 S 1.81402 * 109.47185 * 180.02562 * 18 16 15 20 20 C 1.81396 * 103.00320 * 180.02562 * 19 18 16 21 21 C 1.50694 * 109.47458 * 180.02562 * 20 19 18 22 22 O 1.20826 * 119.99606 * 359.97438 * 21 20 19 23 23 O 1.34229 * 120.00136 * 180.02562 * 21 20 19 24 24 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 25 25 C 1.38101 * 120.07425 * 359.95492 * 24 13 12 26 26 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 29 29 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 30 30 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 31 31 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 32 32 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 33 33 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 34 34 H 1.08995 * 109.46930 * 300.00290 * 20 19 18 35 35 H 1.09006 * 109.47120 * 59.99468 * 20 19 18 36 36 H 0.96698 * 116.99782 * 180.02562 * 23 21 20 37 37 H 1.07999 * 119.96503 * 179.97438 * 24 13 12 38 38 H 1.07992 * 120.03608 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 16 6.6082 -10.8334 2.2608 20 6 6.8214 -11.3466 3.9875 21 6 7.6321 -12.6159 4.0379 22 8 8.0253 -13.1227 3.0140 23 8 7.9165 -13.1841 5.2203 24 6 4.2024 -4.5970 -0.2043 25 6 3.4573 -3.4394 -0.0951 26 1 -0.4850 0.8400 0.0004 27 1 0.3579 -4.7892 -0.2301 28 1 1.6954 -6.8451 -0.4339 29 1 3.8358 -7.8149 -1.0361 30 1 5.3320 -6.8560 -0.9360 31 1 4.2983 -7.1684 1.6738 32 1 6.1753 -8.5817 2.9944 33 1 4.6787 -9.5401 2.8951 34 1 7.3405 -10.5623 4.5382 35 1 5.8442 -11.5210 4.4380 36 1 8.4396 -13.9972 5.2021 37 1 5.2812 -4.5470 -0.1945 38 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740305857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:00 Heat of formation + Delta-G solvation = -150.364636 kcal Electronic energy + Delta-G solvation = -22854.098308 eV Core-core repulsion = 18980.832867 eV Total energy + Delta-G solvation = -3873.265441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20556 -41.00165 -40.45717 -38.48939 -37.17396 -35.68858 -34.28034 -32.23773 -31.81277 -31.43482 -30.26849 -27.60099 -26.03384 -23.64147 -23.16806 -22.19349 -21.67517 -19.87248 -19.19611 -18.95888 -18.46891 -17.78779 -17.22671 -17.20051 -16.78387 -16.59225 -16.32692 -16.21708 -15.75941 -15.50906 -15.15570 -14.77560 -14.51965 -14.36485 -14.19990 -14.16795 -13.87779 -13.75798 -13.53072 -13.11894 -13.00457 -12.60411 -12.52559 -12.37081 -12.24734 -12.13585 -11.80277 -11.20145 -11.14949 -10.94527 -10.78391 -10.11372 -9.80498 -9.00903 -8.75035 -8.47833 -6.16107 0.14089 0.56930 0.58385 1.11330 1.36436 1.40428 1.46041 1.52085 1.57501 2.11089 2.17528 2.28608 2.85524 3.16671 3.49869 3.75760 3.90862 4.02862 4.03580 4.13865 4.18293 4.19689 4.33396 4.35117 4.46131 4.57478 4.76573 4.81349 5.04839 5.14668 5.27233 5.39002 5.53159 5.54712 5.69787 5.75325 6.01690 6.16510 6.52224 6.90237 6.96944 7.19594 7.76110 8.74584 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.029223 B = 0.001723 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.927518 B =16249.989939 C =16584.893342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.205 4.205 12 C -0.043 4.043 13 C -0.182 4.182 14 C 0.185 3.815 15 N -0.707 5.707 16 C 0.525 3.475 17 O -0.572 6.572 18 C -0.124 4.124 19 S -0.194 6.194 20 C -0.108 4.108 21 C 0.500 3.500 22 O -0.541 6.541 23 O -0.504 6.504 24 C -0.045 4.045 25 C -0.244 4.244 26 H 0.273 0.727 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.416 0.584 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.433 0.567 37 H 0.140 0.860 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.396 -19.777 12.252 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.183 4.183 14 C 0.062 3.938 15 N -0.360 5.360 16 C 0.311 3.689 17 O -0.452 6.452 18 C -0.274 4.274 19 S 0.030 5.970 20 C -0.256 4.256 21 C 0.342 3.658 22 O -0.431 6.431 23 O -0.318 6.318 24 C -0.063 4.063 25 C -0.264 4.264 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.253 0.747 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.295 0.705 37 H 0.158 0.842 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.541 -20.278 10.409 26.512 hybrid contribution -0.326 1.273 1.151 1.747 sum 13.214 -19.006 11.560 25.874 Atomic orbital electron populations 1.70169 1.08008 1.28913 1.48492 1.26570 0.96812 1.02735 0.95791 0.84668 0.77409 0.74366 0.79941 1.18321 1.19808 1.17999 1.21791 0.92575 0.81334 1.53329 0.87868 1.83946 1.36089 1.12681 1.80813 1.20011 0.91665 0.87951 0.93253 1.20452 1.00093 0.90434 1.11435 1.20887 0.93068 0.96991 0.95175 1.19462 0.93409 0.94010 1.11398 1.19880 0.98415 0.91436 0.84078 1.46022 1.54322 1.25442 1.10188 1.20134 0.77708 0.80524 0.90518 1.90761 1.52283 1.60359 1.41762 1.23567 1.06306 0.99351 0.98221 1.88700 1.70870 1.30504 1.06916 1.23151 1.05874 0.96883 0.99653 1.22571 0.77090 0.85197 0.80894 1.90806 1.51502 1.64008 1.36802 1.84443 1.69465 1.44991 1.32901 1.20945 0.99836 0.90729 0.94817 1.21253 0.92989 1.00119 1.11993 0.91819 0.86719 0.83436 0.90946 0.91193 0.74733 0.83672 0.83598 0.82861 0.82820 0.70461 0.84250 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.75 13.67 21.62 0.30 -54.45 16 2 C -0.02 -1.16 5.49 84.84 0.47 -0.69 16 3 Si 1.02 41.26 29.55 68.60 2.03 43.28 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.41 -23.11 9.49 67.92 0.64 -22.47 16 8 H 0.10 5.22 5.20 -2.91 -0.02 5.21 16 9 O -0.23 -13.17 9.76 -22.72 -0.22 -13.39 16 10 C 0.12 5.65 6.65 22.58 0.15 5.80 16 11 C -0.20 -7.91 9.99 22.39 0.22 -7.69 16 12 C -0.04 -1.24 9.69 22.25 0.22 -1.03 16 13 C -0.18 -4.84 5.25 -19.84 -0.10 -4.95 16 14 C 0.18 4.11 5.80 85.63 0.50 4.60 16 15 N -0.71 -12.58 5.55 -466.80 -2.59 -15.17 16 16 C 0.53 10.66 7.85 87.66 0.69 11.34 16 17 O -0.57 -17.47 15.86 -3.02 -0.05 -17.51 16 18 C -0.12 -1.41 6.42 71.24 0.46 -0.95 16 19 S -0.19 -3.59 20.01 -56.49 -1.13 -4.72 16 20 C -0.11 -0.89 6.53 71.23 0.47 -0.43 16 21 C 0.50 6.67 8.35 71.23 0.59 7.27 16 22 O -0.54 -12.51 16.62 21.96 0.37 -12.14 16 23 O -0.50 -3.53 13.42 -51.41 -0.69 -4.22 16 24 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 25 C -0.24 -9.67 9.17 22.39 0.21 -9.47 16 26 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 30 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.42 5.52 8.46 -92.71 -0.78 4.74 16 32 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.43 -0.13 9.10 -74.06 -0.67 -0.80 16 37 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.12 4.88 5.64 -2.91 -0.02 4.86 16 Total: -1.00 -83.97 355.78 2.40 -81.57 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.33 Total: 16.54 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.72 Total: -19.78 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -2.29 Total: -69.63 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.59 Total: -47.27 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.13 Total: -4.72 kcal Total: -83.97 2.40 -81.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740305857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.791 kcal (2) G-P(sol) polarization free energy of solvation -83.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds