Wall clock time and date at job start Tue Mar 31 2020 13:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99397 * 2 1 4 4 H 1.48498 * 109.47269 * 270.00025 * 3 2 1 5 5 H 1.48500 * 109.47149 * 30.00358 * 3 2 1 6 6 H 1.48498 * 109.46790 * 150.00005 * 3 2 1 7 7 C 1.37868 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00022 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47410 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00535 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99781 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00413 * 180.02562 * 11 10 9 14 14 O 1.45197 * 109.47199 * 180.02562 * 13 11 10 15 15 C 1.34234 * 117.00220 * 179.97438 * 14 13 11 16 16 O 1.20829 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00530 * 179.97438 * 15 14 13 18 18 S 1.81391 * 109.47345 * 179.97438 * 17 15 14 19 19 C 1.76201 * 103.00285 * 179.97438 * 18 17 15 20 20 C 1.38916 * 120.02906 * 179.97438 * 19 18 17 21 21 C 1.38087 * 119.97850 * 180.02562 * 20 19 18 22 22 C 1.38718 * 120.02339 * 0.02562 * 21 20 19 23 23 O 1.35999 * 119.97469 * 179.97438 * 22 21 20 24 24 C 1.38712 * 120.04828 * 0.22589 * 22 21 20 25 25 C 1.38095 * 120.02419 * 359.49837 * 24 22 21 26 26 H 0.96994 * 120.00597 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47324 * 60.00279 * 9 7 2 28 28 H 1.09002 * 109.47372 * 300.00039 * 9 7 2 29 29 H 0.97000 * 119.99434 * 0.02562 * 10 9 7 30 30 H 1.08994 * 109.47651 * 60.00148 * 13 11 10 31 31 H 1.09002 * 109.46865 * 299.99838 * 13 11 10 32 32 H 1.09002 * 109.46832 * 59.99581 * 17 15 14 33 33 H 1.08999 * 109.47013 * 300.00107 * 17 15 14 34 34 H 1.08003 * 120.01252 * 0.02562 * 20 19 18 35 35 H 1.07997 * 119.99097 * 180.02562 * 21 20 19 36 36 H 0.96700 * 114.00494 * 89.99699 * 23 22 21 37 37 H 1.07998 * 119.98959 * 179.74654 * 24 22 21 38 38 H 1.08003 * 120.00957 * 180.25437 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0010 9 6 1.2512 -2.4990 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 1.7542 -4.8832 -0.0015 12 8 0.5618 -5.1050 -0.0006 13 6 2.7335 -6.0286 -0.0022 14 8 2.0076 -7.2861 -0.0023 15 6 2.7388 -8.4118 -0.0034 16 8 3.9454 -8.3485 -0.0047 17 6 2.0548 -9.7547 -0.0030 18 16 3.3041 -11.0697 -0.0055 19 6 2.3325 -12.5396 -0.0040 20 6 2.9525 -13.7828 -0.0059 21 6 2.1901 -14.9341 -0.0052 22 6 0.8055 -14.8496 -0.0032 23 8 0.0556 -15.9841 -0.0031 24 6 0.1853 -13.6088 -0.0066 25 6 0.9458 -12.4562 -0.0015 26 1 -0.4851 0.8399 0.0004 27 1 0.6243 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8897 29 1 3.1569 -3.4352 -0.0021 30 1 3.3608 -5.9709 0.8873 31 1 3.3595 -5.9708 -0.8926 32 1 1.4309 -9.8449 -0.8923 33 1 1.4330 -9.8454 0.8876 34 1 4.0306 -13.8488 -0.0079 35 1 2.6719 -15.9006 -0.0063 36 1 -0.1601 -16.3130 0.8803 37 1 -0.8927 -13.5442 -0.0091 38 1 0.4627 -11.4902 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757111697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:29 Heat of formation + Delta-G solvation = -159.774906 kcal Electronic energy + Delta-G solvation = -22764.518604 eV Core-core repulsion = 18890.845103 eV Total energy + Delta-G solvation = -3873.673501 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83820 -40.55539 -40.40012 -37.72956 -37.60001 -36.19597 -34.42684 -32.65359 -31.74523 -30.86692 -30.34991 -28.35937 -24.73337 -23.96050 -23.67095 -22.48941 -21.66992 -19.57135 -19.32669 -19.07731 -18.64406 -18.10616 -17.78020 -17.12614 -16.90432 -16.68326 -16.48219 -16.43913 -15.89671 -15.69689 -15.14629 -14.99811 -14.67524 -14.44416 -14.20242 -14.07910 -13.77776 -13.71534 -13.48718 -13.25845 -12.94919 -12.90796 -12.72203 -12.23468 -11.99686 -11.93670 -11.51694 -11.50326 -11.29899 -10.94206 -10.82140 -10.55740 -10.08501 -9.94210 -8.44023 -8.29980 -6.46580 -0.02964 0.04337 0.27967 0.87909 1.18643 1.28298 1.45094 1.46230 1.53468 1.57756 2.32061 2.51233 2.51807 3.05488 3.28835 3.43261 3.69339 3.78542 3.81825 3.90516 4.01549 4.03827 4.09985 4.28954 4.45757 4.65905 4.95014 5.03086 5.09591 5.11628 5.20022 5.21480 5.38946 5.40863 5.61874 5.71009 5.81681 6.36744 6.62368 6.76222 6.84434 7.19820 7.34524 8.81991 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.040122 B = 0.001657 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.708925 B =16890.240057 C =17559.638882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.500 3.500 12 O -0.584 6.584 13 C 0.061 3.939 14 O -0.339 6.339 15 C 0.485 3.515 16 O -0.510 6.510 17 C -0.121 4.121 18 S -0.056 6.056 19 C -0.117 4.117 20 C -0.088 4.088 21 C -0.130 4.130 22 C 0.096 3.904 23 O -0.510 6.510 24 C -0.132 4.132 25 C -0.123 4.123 26 H 0.269 0.731 27 H -0.007 1.007 28 H -0.007 1.007 29 H 0.413 0.587 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.411 0.589 37 H 0.146 0.854 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.597 -30.044 1.764 30.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.464 6.464 13 C -0.016 4.016 14 O -0.255 6.255 15 C 0.327 3.673 16 O -0.399 6.399 17 C -0.269 4.269 18 S 0.187 5.813 19 C -0.230 4.230 20 C -0.111 4.111 21 C -0.150 4.150 22 C 0.049 3.951 23 O -0.323 6.323 24 C -0.152 4.152 25 C -0.147 4.147 26 H 0.078 0.922 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.249 0.751 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.270 0.730 37 H 0.163 0.837 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.213 -29.695 1.169 30.581 hybrid contribution -1.096 0.920 0.462 1.504 sum 6.117 -28.775 1.631 29.463 Atomic orbital electron populations 1.70125 1.08218 1.28621 1.49832 1.26032 0.95758 1.03822 0.93827 0.85158 0.78488 0.77029 0.78550 1.19684 1.21054 1.17951 1.21618 0.94455 0.90431 1.53070 0.89583 1.18638 0.88576 0.83768 0.94671 1.46039 1.11759 1.04723 1.72419 1.20664 0.89276 0.84704 0.76822 1.90693 1.18895 1.85296 1.51536 1.22809 0.92550 0.78692 1.07514 1.86520 1.40954 1.14337 1.83646 1.22881 0.85954 0.86180 0.72264 1.90725 1.15791 1.87672 1.45693 1.23437 1.02333 0.89291 1.11800 1.86257 1.08864 0.93529 1.92661 1.22010 0.96858 0.97489 1.06636 1.20813 1.00819 0.89786 0.99712 1.21567 0.93081 0.99501 1.00831 1.18631 0.89806 0.86142 1.00537 1.84807 1.71875 1.40047 1.35610 1.21564 1.01449 0.91471 1.00754 1.21333 0.91809 0.99971 1.01594 0.92212 0.98900 0.98856 0.75081 0.85458 0.85510 0.82968 0.82809 0.83941 0.83108 0.72954 0.83657 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.44 0.28 -54.62 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.98 41.40 29.54 68.60 2.03 43.42 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.56 -29.42 9.28 25.60 0.24 -29.18 16 8 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.09 5.43 85.63 0.46 14.55 16 10 N -0.70 -27.90 5.55 -466.80 -2.59 -30.49 16 11 C 0.50 19.18 7.91 87.66 0.69 19.87 16 12 O -0.58 -28.35 16.50 15.75 0.26 -28.09 16 13 C 0.06 1.63 5.94 71.23 0.42 2.06 16 14 O -0.34 -9.34 9.75 -45.10 -0.44 -9.78 16 15 C 0.49 11.16 7.98 71.24 0.57 11.73 16 16 O -0.51 -13.74 15.61 21.96 0.34 -13.40 16 17 C -0.12 -1.90 4.93 71.24 0.35 -1.55 16 18 S -0.06 -1.00 21.06 -56.49 -1.19 -2.19 16 19 C -0.12 -1.82 6.11 22.60 0.14 -1.69 16 20 C -0.09 -1.22 9.79 22.40 0.22 -1.00 16 21 C -0.13 -1.60 9.98 22.35 0.22 -1.38 16 22 C 0.10 1.26 6.70 22.50 0.15 1.41 16 23 O -0.51 -5.64 13.50 -93.54 -1.26 -6.90 16 24 C -0.13 -1.73 9.98 22.35 0.22 -1.51 16 25 C -0.12 -1.69 9.36 22.40 0.21 -1.48 16 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.41 13.19 8.32 -92.71 -0.77 12.41 16 30 H 0.13 2.77 8.13 -2.39 -0.02 2.75 16 31 H 0.13 2.77 8.13 -2.39 -0.02 2.75 16 32 H 0.15 1.81 7.75 -2.39 -0.02 1.80 16 33 H 0.15 1.77 7.74 -2.39 -0.02 1.75 16 34 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.41 0.55 9.06 -74.06 -0.67 -0.13 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.14 1.47 5.87 -2.91 -0.02 1.46 16 Total: -1.00 -77.45 356.33 1.48 -75.98 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -0.32 Total: 13.47 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 4.36 Total: 12.60 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -2.30 Total: -85.11 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -1.10 Total: -58.17 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -1.19 Total: -2.19 kcal Total: -77.45 1.48 -75.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757111697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.799 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds