Wall clock time and date at job start Tue Mar 31 2020 13:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47255 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00021 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99661 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.50701 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.38238 * 119.97868 * 99.99816 * 16 15 13 18 18 C 1.38358 * 120.02626 * 179.97438 * 17 16 15 19 19 F 1.35101 * 120.00998 * 179.97438 * 18 17 16 20 20 C 1.38689 * 119.97750 * 0.02562 * 18 17 16 21 21 F 1.35106 * 120.02111 * 180.02562 * 20 18 17 22 22 C 1.38348 * 119.95978 * 0.02562 * 20 18 17 23 23 C 1.38426 * 119.97655 * 279.71937 * 16 15 13 24 24 F 1.35103 * 119.99036 * 0.02562 * 23 16 15 25 25 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 26 26 N 1.30910 * 108.38789 * 0.02562 * 25 11 10 27 27 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 28 28 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 29 29 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 30 30 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 31 31 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 32 32 H 1.08008 * 119.98809 * 0.02562 * 17 16 15 33 33 H 1.07994 * 120.01399 * 180.02562 * 22 20 18 34 34 H 1.07996 * 125.80538 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 -1.3370 -8.8514 -0.0026 17 6 -1.8761 -9.3300 -1.1821 18 6 -3.1315 -9.9116 -1.1837 19 9 -3.6583 -10.3787 -2.3367 20 6 -3.8493 -10.0140 -0.0014 21 9 -5.0750 -10.5823 -0.0019 22 6 -3.3094 -9.5339 1.1784 23 6 -2.0501 -8.9583 1.1790 24 9 -1.5200 -8.4949 2.3320 25 6 -0.3512 -3.8199 0.0002 26 7 -0.0715 -2.5410 0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 2.9301 -3.8707 -0.0031 29 1 1.8708 -6.3426 -0.0012 30 1 0.5769 -8.5321 -0.8916 31 1 0.5756 -8.5325 0.8884 32 1 -1.3168 -9.2505 -2.1027 33 1 -3.8674 -9.6135 2.0996 34 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768926668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:00 Heat of formation + Delta-G solvation = -57.166496 kcal Electronic energy + Delta-G solvation = -25961.134775 eV Core-core repulsion = 21446.902768 eV Total energy + Delta-G solvation = -4514.232007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.74235 -49.18213 -48.81205 -40.09856 -39.29888 -38.23030 -34.26317 -33.25275 -32.88639 -30.70553 -30.24687 -28.48041 -27.07641 -24.81157 -23.74622 -22.63383 -21.06697 -20.31120 -19.44059 -18.54532 -18.16547 -17.60317 -17.52915 -16.81022 -16.40100 -15.99023 -15.57648 -15.44460 -15.28349 -15.20347 -15.12627 -14.67164 -14.62924 -14.28477 -13.96672 -13.44284 -13.40523 -13.12553 -12.89524 -12.52634 -12.04821 -11.85674 -11.71290 -11.64955 -11.44284 -11.26742 -10.96645 -10.54630 -10.19498 -9.52461 -9.22366 -9.18573 -8.83110 -8.76907 -8.07591 -6.72840 -6.56861 -4.24347 0.46044 0.55412 2.76756 2.79710 3.00840 3.04070 3.09330 3.36583 3.57201 3.65378 3.73845 3.87164 4.07936 4.12418 4.21810 4.40030 4.63476 4.72953 5.00380 5.03618 5.14190 5.18920 5.24566 5.40617 5.44179 5.66283 5.75203 6.22070 6.36726 6.43703 6.87282 6.93533 7.08645 7.22159 7.84307 8.13155 8.25940 8.60280 8.80521 9.36344 9.65575 10.39084 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.002446 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.316749 B =11444.053638 C =11594.079580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.084 4.084 11 C -0.061 4.061 12 N -0.622 5.622 13 C 0.499 3.501 14 O -0.529 6.529 15 C -0.100 4.100 16 C -0.074 4.074 17 C -0.085 4.085 18 C 0.059 3.941 19 F -0.125 7.125 20 C 0.096 3.904 21 F -0.122 7.122 22 C -0.163 4.163 23 C 0.143 3.857 24 F -0.119 7.119 25 C -0.032 4.032 26 N -0.261 5.261 27 H 0.275 0.725 28 H 0.146 0.854 29 H 0.398 0.602 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -19.413 0.110 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.167 4.167 12 N -0.264 5.264 13 C 0.284 3.716 14 O -0.405 6.405 15 C -0.141 4.141 16 C -0.075 4.075 17 C -0.104 4.104 18 C 0.039 3.961 19 F -0.104 7.104 20 C 0.075 3.925 21 F -0.101 7.101 22 C -0.183 4.183 23 C 0.123 3.877 24 F -0.098 7.098 25 C -0.208 4.208 26 N -0.092 5.092 27 H 0.086 0.914 28 H 0.163 0.837 29 H 0.231 0.769 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.175 0.825 33 H 0.177 0.823 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.165 -17.718 0.118 17.757 hybrid contribution 1.004 -0.443 0.014 1.098 sum -0.161 -18.161 0.132 18.163 Atomic orbital electron populations 1.70216 1.06133 1.28001 1.35243 1.25643 0.95706 1.00280 0.95492 0.85830 0.79387 0.79970 0.78969 1.19587 1.20079 1.18809 1.19869 0.91649 0.80552 1.53498 0.86616 1.44557 1.04054 1.03317 1.39069 1.21258 0.96824 0.85391 1.20011 1.17252 0.94289 0.81186 1.23938 1.42439 1.08071 1.04600 1.71288 1.20027 0.84827 0.87816 0.78925 1.90638 1.25717 1.74700 1.49485 1.20593 0.94022 0.93298 1.06140 1.19220 0.97190 0.99719 0.91413 1.20782 0.93370 0.97146 0.99100 1.17515 0.94036 1.03308 0.81288 1.91547 1.86189 1.86386 1.46248 1.17205 0.82195 1.00051 0.93013 1.91556 1.39315 1.82113 1.97096 1.20893 0.95825 1.02711 0.98825 1.17041 0.91757 0.96744 0.82151 1.91570 1.85698 1.85984 1.46516 1.24106 0.98027 0.90751 1.07906 1.78263 0.90116 1.15095 1.25702 0.91447 0.83700 0.76941 0.87086 0.87224 0.82531 0.82338 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.48 11.81 55.49 0.66 -20.82 16 2 C 0.05 1.18 5.50 -17.51 -0.10 1.09 16 3 Si 0.93 18.80 29.55 -169.99 -5.02 13.78 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.32 -8.49 10.25 -14.81 -0.15 -8.64 16 8 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 9 N -0.14 -3.88 3.74 -11.41 -0.04 -3.92 16 10 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 11 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 12 N -0.62 -10.21 5.47 -10.00 -0.05 -10.27 16 13 C 0.50 7.90 7.79 -10.99 -0.09 7.81 16 14 O -0.53 -10.73 13.11 5.54 0.07 -10.66 16 15 C -0.10 -0.99 5.56 -29.03 -0.16 -1.15 16 16 C -0.07 -0.80 4.43 -104.55 -0.46 -1.27 16 17 C -0.09 -0.84 9.64 -39.54 -0.38 -1.23 16 18 C 0.06 0.65 7.31 -39.37 -0.29 0.36 16 19 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 20 C 0.10 1.06 7.31 -39.37 -0.29 0.77 16 21 F -0.12 -1.41 17.18 2.25 0.04 -1.37 16 22 C -0.16 -1.70 10.00 -39.46 -0.39 -2.09 16 23 C 0.14 1.66 7.13 -39.43 -0.28 1.38 16 24 F -0.12 -1.53 16.65 2.25 0.04 -1.50 16 25 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 26 N -0.26 -7.56 10.40 30.80 0.32 -7.24 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 29 H 0.40 4.74 8.83 -40.82 -0.36 4.38 16 30 H 0.11 0.72 8.00 -51.93 -0.42 0.30 16 31 H 0.11 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.16 1.18 8.04 -52.48 -0.42 0.76 16 33 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -34.11 321.53 -4.97 -39.08 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -2.31 Total: 7.56 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -3.54 Total: -8.07 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.88 Total: -42.25 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.11 Total: -4.29 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.11 -4.97 -39.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768926668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.091 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds