Wall clock time and date at job start Tue Mar 31 2020 13:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47255 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00021 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99661 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.50701 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.38238 * 119.97868 * 99.99816 * 16 15 13 18 18 C 1.38358 * 120.02626 * 179.97438 * 17 16 15 19 19 F 1.35101 * 120.00998 * 179.97438 * 18 17 16 20 20 C 1.38689 * 119.97750 * 0.02562 * 18 17 16 21 21 F 1.35106 * 120.02111 * 180.02562 * 20 18 17 22 22 C 1.38348 * 119.95978 * 0.02562 * 20 18 17 23 23 C 1.38426 * 119.97655 * 279.71937 * 16 15 13 24 24 F 1.35103 * 119.99036 * 0.02562 * 23 16 15 25 25 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 26 26 N 1.30910 * 108.38789 * 0.02562 * 25 11 10 27 27 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 28 28 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 29 29 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 30 30 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 31 31 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 32 32 H 1.08008 * 119.98809 * 0.02562 * 17 16 15 33 33 H 1.07994 * 120.01399 * 180.02562 * 22 20 18 34 34 H 1.07996 * 125.80538 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 -1.3370 -8.8514 -0.0026 17 6 -1.8761 -9.3300 -1.1821 18 6 -3.1315 -9.9116 -1.1837 19 9 -3.6583 -10.3787 -2.3367 20 6 -3.8493 -10.0140 -0.0014 21 9 -5.0750 -10.5823 -0.0019 22 6 -3.3094 -9.5339 1.1784 23 6 -2.0501 -8.9583 1.1790 24 9 -1.5200 -8.4949 2.3320 25 6 -0.3512 -3.8199 0.0002 26 7 -0.0715 -2.5410 0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 2.9301 -3.8707 -0.0031 29 1 1.8708 -6.3426 -0.0012 30 1 0.5769 -8.5321 -0.8916 31 1 0.5756 -8.5325 0.8884 32 1 -1.3168 -9.2505 -2.1027 33 1 -3.8674 -9.6135 2.0996 34 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768926668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:59 Heat of formation + Delta-G solvation = -79.396832 kcal Electronic energy + Delta-G solvation = -25962.098755 eV Core-core repulsion = 21446.902768 eV Total energy + Delta-G solvation = -4515.195987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.62242 -50.11078 -49.69618 -41.69654 -40.58712 -39.42390 -35.89127 -34.93484 -33.86622 -32.20936 -31.51762 -29.94861 -28.37549 -26.62812 -24.58484 -23.66087 -22.80621 -21.75136 -21.14577 -19.42985 -19.31726 -19.02164 -18.45561 -17.92750 -17.49272 -17.33497 -17.05269 -16.64786 -16.50785 -16.26645 -16.09723 -15.75743 -15.69143 -15.41861 -15.16924 -15.03517 -14.79028 -14.70534 -14.10231 -13.49359 -13.41282 -13.25618 -12.97310 -12.85300 -12.80884 -12.70342 -12.48307 -12.08267 -11.79239 -10.98560 -10.82260 -10.70821 -10.20233 -10.07743 -9.66697 -8.48693 -8.45170 -6.22124 -0.40604 -0.25369 1.24947 1.40696 1.55952 1.58608 1.89378 1.90476 2.12281 2.44382 2.54169 2.56724 2.88325 2.98258 3.11100 3.25916 3.28022 3.41841 3.85142 4.04351 4.30812 4.40217 4.44079 4.49672 4.62736 4.64983 4.69568 4.82640 4.96371 5.02657 5.12615 5.32631 5.52230 5.55094 5.98501 6.35332 6.76850 6.81658 7.45142 7.51379 7.72229 8.54215 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.002446 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.316749 B =11444.053638 C =11594.079580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.243 1.243 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.171 5.171 10 C -0.080 4.080 11 C -0.042 4.042 12 N -0.614 5.614 13 C 0.496 3.504 14 O -0.576 6.576 15 C -0.087 4.087 16 C -0.082 4.082 17 C -0.077 4.077 18 C 0.049 3.951 19 F -0.131 7.131 20 C 0.087 3.913 21 F -0.128 7.128 22 C -0.162 4.162 23 C 0.127 3.873 24 F -0.130 7.130 25 C -0.061 4.061 26 N -0.313 5.313 27 H 0.275 0.725 28 H 0.190 0.810 29 H 0.423 0.577 30 H 0.158 0.842 31 H 0.138 0.862 32 H 0.185 0.815 33 H 0.174 0.826 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -20.794 -0.209 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.166 1.166 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.060 4.940 10 C -0.230 4.230 11 C -0.148 4.148 12 N -0.260 5.260 13 C 0.285 3.715 14 O -0.456 6.456 15 C -0.126 4.126 16 C -0.083 4.083 17 C -0.095 4.095 18 C 0.029 3.971 19 F -0.109 7.109 20 C 0.066 3.934 21 F -0.107 7.107 22 C -0.181 4.181 23 C 0.107 3.893 24 F -0.108 7.108 25 C -0.237 4.237 26 N -0.145 5.145 27 H 0.085 0.915 28 H 0.207 0.793 29 H 0.261 0.739 30 H 0.176 0.824 31 H 0.156 0.844 32 H 0.202 0.798 33 H 0.192 0.808 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.641 -19.170 -0.200 19.241 hybrid contribution 0.087 -0.228 0.114 0.269 sum 1.727 -19.398 -0.086 19.474 Atomic orbital electron populations 1.70406 1.08439 1.28969 1.37659 1.26871 0.96449 1.04355 0.94226 0.84605 0.78316 0.74153 0.79203 1.18915 1.20402 1.16643 1.20602 0.92940 0.80919 1.54019 0.84125 1.44839 1.03585 1.04897 1.40684 1.22047 0.98929 0.84157 1.17905 1.17320 0.92485 0.84103 1.20879 1.42419 1.10036 1.02055 1.71481 1.21161 0.83641 0.90225 0.76523 1.90634 1.27701 1.76197 1.51025 1.20662 0.94245 0.87857 1.09805 1.19413 0.97816 0.99828 0.91271 1.21064 0.92839 0.95776 0.99837 1.17719 0.94643 1.03704 0.81033 1.91533 1.86367 1.86528 1.46504 1.17352 0.82147 1.00428 0.93446 1.91540 1.39705 1.82271 1.97146 1.21033 0.95678 1.02063 0.99328 1.17304 0.92372 0.97342 0.82295 1.91542 1.85857 1.86260 1.47144 1.24160 0.99116 0.90961 1.09429 1.78149 0.92151 1.16780 1.27451 0.91532 0.79348 0.73909 0.82437 0.84373 0.79773 0.80811 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.98 11.81 21.66 0.26 -47.73 16 2 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 3 Si 1.02 38.48 29.55 68.60 2.03 40.50 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.24 -8.28 7.11 99.48 0.71 -7.58 16 7 C -0.35 -18.58 10.25 84.01 0.86 -17.72 16 8 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 9 N -0.17 -9.39 3.74 -190.01 -0.71 -10.10 16 10 C -0.08 -3.57 11.49 83.37 0.96 -2.62 16 11 C -0.04 -1.82 6.90 37.73 0.26 -1.56 16 12 N -0.61 -18.47 5.47 -303.93 -1.66 -20.13 16 13 C 0.50 14.54 7.79 87.66 0.68 15.23 16 14 O -0.58 -23.20 13.11 -3.11 -0.04 -23.24 16 15 C -0.09 -1.35 5.56 29.10 0.16 -1.19 16 16 C -0.08 -1.56 4.43 -19.82 -0.09 -1.65 16 17 C -0.08 -1.32 9.64 22.30 0.22 -1.11 16 18 C 0.05 1.02 7.31 22.41 0.16 1.18 16 19 F -0.13 -2.90 17.18 44.97 0.77 -2.13 16 20 C 0.09 1.85 7.31 22.40 0.16 2.02 16 21 F -0.13 -2.91 17.18 44.97 0.77 -2.14 16 22 C -0.16 -3.23 10.00 22.35 0.22 -3.01 16 23 C 0.13 2.77 7.13 22.37 0.16 2.93 16 24 F -0.13 -3.18 16.65 44.97 0.75 -2.43 16 25 C -0.06 -3.30 10.85 85.42 0.93 -2.37 16 26 N -0.31 -18.87 10.40 -56.46 -0.59 -19.46 16 27 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.19 6.46 8.06 -2.91 -0.02 6.44 16 29 H 0.42 8.25 8.83 -92.71 -0.82 7.44 16 30 H 0.16 1.07 8.00 -2.39 -0.02 1.05 16 31 H 0.14 1.48 7.93 -2.39 -0.02 1.46 16 32 H 0.19 2.06 8.04 -2.91 -0.02 2.03 16 33 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.17 9.00 5.92 -2.91 -0.02 8.98 16 Total: -1.00 -79.65 321.53 7.12 -72.53 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.38 Total: 24.13 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 5.16 Total: -9.81 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -2.70 Total: -97.41 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.04 Total: -23.24 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 2.29 Total: -6.70 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.50 kcal Total: -79.65 7.12 -72.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768926668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.863 kcal (2) G-P(sol) polarization free energy of solvation -79.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds