Wall clock time and date at job start Tue Mar 31 2020 14:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.52999 * 109.47400 * 180.02562 * 3 2 1 5 5 S 1.80997 * 109.47311 * 180.02562 * 4 3 2 6 6 C 1.76204 * 99.99984 * 180.02562 * 5 4 3 7 7 C 1.39064 * 120.19386 * 0.02562 * 6 5 4 8 8 C 1.37884 * 120.06563 * 179.97438 * 7 6 5 9 9 C 1.38702 * 120.46802 * 359.97438 * 8 7 6 10 10 N 1.48014 * 119.80824 * 180.02562 * 9 8 7 11 11 O 1.31701 * 119.99849 * 359.97438 * 10 9 8 12 12 O 1.31699 * 120.00467 * 179.97438 * 10 9 8 13 13 C 1.37675 * 120.38654 * 359.78082 * 9 8 7 14 14 C 1.39876 * 119.92089 * 0.47382 * 13 9 8 15 15 C 1.47126 * 120.22823 * 179.78516 * 14 13 9 16 16 O 1.21499 * 120.00557 * 179.44853 * 15 14 13 17 17 O 1.35096 * 120.00147 * 359.72325 * 15 14 13 18 18 C 1.22508 * 117.00322 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00223 * 359.97438 * 18 17 15 20 20 C 1.46587 * 119.99890 * 180.02562 * 18 17 15 21 21 N 1.29383 * 120.00018 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00152 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46838 * 90.00033 * 22 20 18 24 24 H 1.48498 * 109.46979 * 210.00193 * 22 20 18 25 25 H 1.48499 * 109.47238 * 330.00506 * 22 20 18 26 26 H 1.08995 * 109.46859 * 299.99775 * 1 2 3 27 27 H 1.08999 * 109.47451 * 59.99786 * 1 2 3 28 28 H 1.09002 * 109.47019 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47211 * 240.00660 * 2 1 3 30 30 H 1.08999 * 109.47451 * 120.00214 * 2 1 3 31 31 H 1.09005 * 109.46577 * 60.00271 * 3 2 1 32 32 H 1.08999 * 109.47170 * 300.00386 * 3 2 1 33 33 H 1.09000 * 109.46766 * 59.99658 * 4 3 2 34 34 H 1.08997 * 109.46777 * 300.00483 * 4 3 2 35 35 H 1.08002 * 119.96747 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.76584 * 180.02562 * 8 7 6 37 37 H 1.08004 * 120.03884 * 180.22871 * 13 9 8 38 38 H 0.96996 * 120.00142 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 16 4.1733 3.1491 0.0001 6 6 5.9113 2.8592 -0.0016 7 6 6.4034 1.5585 -0.0035 8 6 7.7640 1.3347 -0.0053 9 6 8.6520 2.4002 -0.0058 10 7 10.1096 2.1431 -0.0084 11 8 10.5600 0.9055 -0.0097 12 8 10.9563 3.1519 -0.0094 13 6 8.1855 3.6955 -0.0090 14 6 6.8085 3.9412 -0.0018 15 6 6.3027 5.3228 -0.0004 16 8 5.1058 5.5316 -0.0042 17 8 7.1691 6.3594 -0.0004 18 6 6.6882 7.4862 0.0013 19 1 5.6160 7.6158 0.0023 20 6 7.5682 8.6585 0.0007 21 7 7.0605 9.8486 0.0020 22 14 9.4228 8.4344 -0.0018 23 1 9.9123 8.3758 -1.4025 24 1 10.0605 9.5783 0.6981 25 1 9.7696 7.1708 0.6970 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 5.7192 0.7229 -0.0044 36 1 8.1408 0.3226 -0.0072 37 1 8.8820 4.5210 -0.0131 38 1 7.6427 10.6243 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777230555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:11 Heat of formation + Delta-G solvation = -9.611777 kcal Electronic energy + Delta-G solvation = -24367.292078 eV Core-core repulsion = 20500.130139 eV Total energy + Delta-G solvation = -3867.161939 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.72761 -39.72888 -38.01876 -36.06625 -35.73507 -34.24227 -33.15357 -31.99200 -31.60850 -30.31271 -26.76943 -26.28604 -24.57238 -23.40082 -22.44369 -21.47457 -20.46857 -18.96257 -18.55912 -17.90285 -17.51864 -16.71505 -15.98348 -15.81585 -15.39747 -15.35067 -15.32567 -15.04462 -14.53761 -14.23051 -13.95334 -13.81065 -13.29392 -13.13654 -12.95561 -12.58451 -12.28987 -11.85454 -11.81493 -11.66095 -11.47073 -11.17118 -11.08604 -10.96625 -10.91765 -10.89079 -10.70772 -10.51915 -10.40414 -10.11908 -10.02109 -9.30005 -9.27285 -8.81340 -7.47502 -7.12019 -4.07025 -0.57004 0.65058 1.10893 1.27577 1.57978 2.42193 2.70250 2.96356 3.00564 3.08429 3.71151 3.73011 3.83780 4.38242 4.51885 4.60179 4.61456 4.66930 4.80830 4.88871 4.95518 4.99694 5.23418 5.24254 5.39122 5.48556 5.49460 5.52571 5.66217 5.73547 5.75344 5.83459 5.94608 5.95026 6.04404 6.16716 6.39830 6.95558 7.21747 7.53496 8.08584 8.61847 9.63130 9.92046 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.004328 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.793514 B = 6467.939298 C = 9315.680427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.191 4.191 5 S 0.071 5.929 6 C -0.034 4.034 7 C -0.140 4.140 8 C -0.044 4.044 9 C -0.020 4.020 10 N -0.008 5.008 11 O -0.190 6.190 12 O -0.179 6.179 13 C -0.016 4.016 14 C -0.053 4.053 15 C 0.332 3.668 16 O -0.539 6.539 17 O -0.156 6.156 18 C -0.349 4.349 19 H 0.111 0.889 20 C 0.064 3.936 21 N -0.787 5.787 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.246 1.246 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 -15.532 0.013 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.140 4.140 4 C -0.338 4.338 5 S 0.323 5.677 6 C -0.151 4.151 7 C -0.166 4.166 8 C -0.066 4.066 9 C -0.111 4.111 10 N 0.468 4.532 11 O -0.381 6.381 12 O -0.371 6.371 13 C -0.039 4.039 14 C -0.062 4.062 15 C 0.191 3.809 16 O -0.444 6.444 17 O -0.058 6.058 18 C -0.427 4.427 19 H 0.128 0.872 20 C -0.155 4.155 21 N -0.418 5.418 22 Si 0.730 3.270 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.169 1.169 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.409 -14.043 0.017 15.877 hybrid contribution 2.037 -1.025 -0.015 2.281 sum -5.371 -15.068 0.002 15.997 Atomic orbital electron populations 1.21776 0.95602 1.01612 1.02101 1.21530 0.96010 0.96165 1.02128 1.21276 0.91728 0.97508 1.03504 1.24393 1.00894 1.03366 1.05183 1.87673 0.92321 1.01835 1.85855 1.22599 1.00402 0.94841 0.97210 1.20997 0.94643 0.95327 1.05661 1.20816 0.91979 0.98726 0.95100 1.20110 0.76896 0.96027 1.18061 1.50443 1.04692 1.02531 0.95569 1.96222 1.84246 1.01196 1.56397 1.96293 1.52614 1.32354 1.55841 1.21249 0.95853 0.95247 0.91510 1.18608 0.90632 0.91402 1.05562 1.19482 0.85044 0.83834 0.92575 1.90529 1.14857 1.81709 1.57294 1.80142 1.42162 1.15540 1.67945 1.20485 0.96753 0.80290 1.45189 0.87157 1.26583 1.01237 0.92895 0.94748 1.68570 1.40053 0.99286 1.33862 0.86145 0.80109 0.80326 0.80459 1.18476 1.19514 1.16867 0.92575 0.92580 0.92736 0.91902 0.91899 0.90912 0.90917 0.89593 0.89600 0.83276 0.82971 0.81883 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.87 5.93 -26.73 -0.16 -1.02 16 3 C -0.10 -0.92 5.22 -26.73 -0.14 -1.06 16 4 C -0.19 -1.92 4.17 37.16 0.15 -1.76 16 5 S 0.07 1.10 18.98 -107.50 -2.04 -0.94 16 6 C -0.03 -0.54 6.16 -38.40 -0.24 -0.78 16 7 C -0.14 -1.74 9.17 -39.40 -0.36 -2.10 16 8 C -0.04 -0.57 9.56 -39.54 -0.38 -0.95 16 9 C -0.02 -0.33 6.88 -79.98 -0.55 -0.88 16 10 N -0.01 -0.14 4.98 33.95 0.17 0.03 16 11 O -0.19 -3.29 19.13 -31.57 -0.60 -3.89 16 12 O -0.18 -3.43 19.13 -31.57 -0.60 -4.04 16 13 C -0.02 -0.28 9.14 -39.17 -0.36 -0.64 16 14 C -0.05 -1.00 5.89 -104.80 -0.62 -1.62 16 15 C 0.33 7.75 7.74 34.34 0.27 8.01 16 16 O -0.54 -13.57 12.89 -19.25 -0.25 -13.82 16 17 O -0.16 -3.86 7.48 -1.92 -0.01 -3.88 16 18 C -0.35 -9.31 10.12 34.10 0.35 -8.97 16 19 H 0.11 3.27 6.82 -52.49 -0.36 2.91 16 20 C 0.06 1.59 5.69 -15.22 -0.09 1.50 16 21 N -0.79 -19.84 13.88 55.99 0.78 -19.06 16 22 Si 0.91 18.74 28.83 -169.99 -4.90 13.84 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.25 -5.08 7.11 56.52 0.40 -4.68 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.76 7.54 -51.92 -0.39 0.37 16 34 H 0.09 0.76 7.54 -51.92 -0.39 0.37 16 35 H 0.15 1.34 5.50 -52.49 -0.29 1.06 16 36 H 0.15 1.61 7.56 -52.49 -0.40 1.21 16 37 H 0.16 3.00 7.11 -52.48 -0.37 2.62 16 38 H 0.30 6.68 8.26 -40.82 -0.34 6.34 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -28.36 349.52 -8.24 -36.60 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.29 Total: 0.82 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.75 Total: -10.93 kcal Atomic # 7 Polarization: -19.98 SS G_CDS: 0.95 Total: -19.03 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -1.47 Total: -25.62 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.90 Total: 13.84 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.04 Total: -0.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.36 -8.24 -36.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777230555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.993 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds