Wall clock time and date at job start Tue Mar 31 2020 14:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21250 * 120.00174 * 2 1 4 4 C 1.47189 * 120.00145 * 179.97438 * 2 1 3 5 5 C 1.39969 * 120.10174 * 174.45562 * 4 2 1 6 6 C 1.37983 * 120.11911 * 179.97438 * 5 4 2 7 7 C 1.38146 * 120.32197 * 0.02562 * 6 5 4 8 8 C 1.39697 * 120.20447 * 0.04530 * 7 6 5 9 9 C 1.47864 * 120.06082 * 179.97438 * 8 7 6 10 10 O 1.21550 * 119.99726 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00377 * 359.93500 * 9 8 7 12 12 S 1.65594 * 120.00416 * 179.97438 * 11 9 8 13 13 O 1.42098 * 104.27842 * 181.07057 * 12 11 9 14 14 O 1.42106 * 104.27736 * 308.92931 * 12 11 9 15 15 C 1.81404 * 104.44866 * 64.99841 * 12 11 9 16 16 C 1.53001 * 109.47160 * 180.02562 * 15 12 11 17 17 C 1.50695 * 109.47072 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00149 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99784 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00313 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99561 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47501 * 359.97438 * 21 19 17 23 23 H 1.48510 * 109.46897 * 119.99836 * 21 19 17 24 24 H 1.48500 * 109.46554 * 239.99185 * 21 19 17 25 25 C 1.39276 * 119.87677 * 359.92772 * 8 7 6 26 26 H 1.09005 * 109.47345 * 185.07933 * 1 2 3 27 27 H 1.09000 * 109.47471 * 305.07775 * 1 2 3 28 28 H 1.09005 * 109.47198 * 65.08068 * 1 2 3 29 29 H 1.08004 * 119.94178 * 0.02907 * 5 4 2 30 30 H 1.08001 * 119.83957 * 180.02562 * 6 5 4 31 31 H 1.07999 * 119.89558 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99303 * 359.97438 * 11 9 8 33 33 H 1.09006 * 109.46829 * 299.99663 * 15 12 11 34 34 H 1.08991 * 109.47303 * 60.00021 * 15 12 11 35 35 H 1.08997 * 109.46829 * 300.00004 * 16 15 12 36 36 H 1.09004 * 109.47021 * 59.99791 * 16 15 12 37 37 H 0.96991 * 120.00253 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.15620 * 180.31977 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 3.6377 -1.2800 -0.1164 6 6 4.3280 -2.4747 -0.1154 7 6 3.6493 -3.6723 0.0003 8 6 2.2572 -3.6828 0.1164 9 6 1.5338 -4.9666 0.2395 10 8 0.3226 -4.9743 0.3409 11 7 2.2174 -6.1281 0.2385 12 16 1.4074 -7.5657 0.3771 13 8 2.4334 -8.5487 0.3643 14 8 0.5746 -7.3905 1.5152 15 6 0.4077 -7.6694 -1.1331 16 6 -0.3977 -8.9702 -1.1234 17 6 -1.2276 -9.0566 -2.3782 18 1 -1.1852 -8.2628 -3.1094 19 6 -2.0419 -10.1485 -2.5924 20 7 -2.0939 -11.1148 -1.7019 21 14 -3.0701 -10.2559 -4.1483 22 1 -2.8333 -9.0504 -4.9824 23 1 -2.6865 -11.4702 -4.9124 24 1 -4.5084 -10.3325 -3.7867 25 6 1.5520 -2.4818 0.1169 26 1 -0.3634 -1.0237 0.0910 27 1 -0.3634 0.5906 0.8410 28 1 -0.3634 0.4330 -0.9320 29 1 4.1746 -0.3473 -0.2068 30 1 5.4043 -2.4736 -0.2055 31 1 4.1965 -4.6034 0.0008 32 1 3.1839 -6.1219 0.1567 33 1 -0.2746 -6.8204 -1.1761 34 1 1.0627 -7.6537 -2.0042 35 1 0.2843 -9.8194 -1.0801 36 1 -1.0527 -8.9855 -0.2522 37 1 -2.6664 -11.8831 -1.8527 38 1 0.4761 -2.4844 0.2115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783429528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:11 Heat of formation + Delta-G solvation = -123.850025 kcal Electronic energy + Delta-G solvation = -24432.970094 eV Core-core repulsion = 20560.854413 eV Total energy + Delta-G solvation = -3872.115681 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93574 -39.86977 -38.24103 -36.76752 -35.69802 -34.75458 -33.93766 -32.56780 -31.71668 -31.21797 -29.72271 -25.68804 -24.85076 -24.34486 -21.83787 -21.65627 -20.40258 -19.57730 -18.47695 -17.65558 -16.94687 -16.62013 -16.21054 -15.94902 -15.90048 -15.42207 -15.21654 -14.97307 -14.86312 -14.57640 -14.49652 -14.41450 -13.50478 -13.10512 -12.69622 -12.58413 -12.48663 -12.45074 -12.36134 -11.94074 -11.85242 -11.78915 -11.68835 -11.12623 -11.05458 -10.96728 -10.58889 -10.40663 -10.38544 -10.19219 -9.75723 -9.60666 -9.59532 -9.21114 -8.52783 -6.14850 -4.20401 0.00180 0.39145 0.46104 1.74543 2.33470 2.60189 3.24641 3.30181 3.31947 3.35501 3.53987 3.80330 4.02914 4.19366 4.34531 4.36429 4.52137 4.57329 4.64965 4.76014 4.83156 4.96237 5.04906 5.06212 5.20673 5.40847 5.49109 5.53542 5.62838 5.66981 5.71057 5.82125 6.17002 6.40348 6.50488 7.04720 7.24491 7.28253 7.31344 7.78410 8.13586 8.82873 9.44430 10.96295 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.002971 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.091457 B = 9420.978507 C =10527.367438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.401 3.599 3 O -0.459 6.459 4 C -0.181 4.181 5 C -0.033 4.033 6 C -0.137 4.137 7 C -0.050 4.050 8 C -0.150 4.150 9 C 0.581 3.419 10 O -0.482 6.482 11 N -1.056 6.056 12 S 2.564 3.436 13 O -0.952 6.952 14 O -0.935 6.935 15 C -0.574 4.574 16 C 0.029 3.971 17 C -0.519 4.519 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.901 3.099 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.010 4.010 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.426 0.574 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.591 19.812 2.451 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.279 3.721 3 O -0.335 6.335 4 C -0.182 4.182 5 C -0.051 4.051 6 C -0.155 4.155 7 C -0.068 4.068 8 C -0.155 4.155 9 C 0.368 3.632 10 O -0.354 6.354 11 N -0.817 5.817 12 S 2.665 3.335 13 O -0.942 6.942 14 O -0.925 6.925 15 C -0.709 4.709 16 C -0.010 4.010 17 C -0.559 4.559 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.029 4.029 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.262 0.738 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.041 19.623 3.357 23.266 hybrid contribution -0.118 -0.071 -1.404 1.410 sum 11.924 19.552 1.954 22.984 Atomic orbital electron populations 1.22291 0.93165 1.05527 1.05320 1.22483 0.91920 0.87177 0.70520 1.90543 1.72121 1.34168 1.36654 1.20556 0.94778 0.94866 1.08025 1.21691 0.93047 0.99171 0.91227 1.21143 1.00903 0.91567 1.01851 1.21654 0.92909 0.99292 0.92975 1.19831 0.94090 0.93243 1.08329 1.18087 0.87021 0.83894 0.74170 1.90992 1.12600 1.87053 1.44767 1.55411 1.21670 1.24134 1.80452 1.06806 0.75473 0.72028 0.79218 1.93596 1.56686 1.55727 1.88213 1.93605 1.68405 1.83381 1.47140 1.30339 1.13105 1.11604 1.15835 1.19006 0.94876 0.86952 1.00186 1.21012 1.25021 1.05710 1.04132 0.91876 1.25068 0.96820 0.95506 0.97074 1.69956 1.38940 1.09155 1.34755 0.86391 0.79985 0.78099 0.82680 1.19607 1.20794 1.20744 1.21748 1.01301 0.89783 0.90038 0.89295 0.88498 0.88244 0.84211 0.84212 0.84574 0.73773 0.84967 0.85935 0.94718 0.94512 0.92528 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.23 10.19 36.00 0.37 -0.86 16 2 C 0.40 3.43 7.22 -30.68 -0.22 3.21 16 3 O -0.46 -5.22 17.10 5.58 0.10 -5.13 16 4 C -0.18 -1.50 5.86 -105.12 -0.62 -2.12 16 5 C -0.03 -0.24 9.59 -39.03 -0.37 -0.61 16 6 C -0.14 -0.81 10.01 -39.71 -0.40 -1.20 16 7 C -0.05 -0.34 9.54 -39.07 -0.37 -0.71 16 8 C -0.15 -1.43 5.87 -105.03 -0.62 -2.05 16 9 C 0.58 7.44 7.51 -12.32 -0.09 7.35 16 10 O -0.48 -7.86 14.44 -11.79 -0.17 -8.03 16 11 N -1.06 -12.74 5.55 30.53 0.17 -12.57 16 12 S 2.56 44.78 5.11 -107.50 -0.55 44.23 16 13 O -0.95 -18.09 18.08 -57.54 -1.04 -19.13 16 14 O -0.94 -19.83 17.04 -64.78 -1.10 -20.93 16 15 C -0.57 -10.99 5.82 37.16 0.22 -10.77 16 16 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 17 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.01 -0.09 8.99 -38.70 -0.35 -0.44 16 26 H 0.09 0.46 5.62 -51.93 -0.29 0.17 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.14 0.90 7.65 -52.48 -0.40 0.50 16 30 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.14 0.56 6.39 -52.49 -0.34 0.22 16 32 H 0.43 3.32 6.81 -34.47 -0.23 3.09 16 33 H 0.13 2.47 7.19 -51.92 -0.37 2.09 16 34 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.15 1.25 5.53 -52.49 -0.29 0.96 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -37.74 345.61 -8.68 -46.43 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.00 Total: 0.07 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -3.01 Total: -20.67 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.91 Total: -38.10 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -2.22 Total: -53.22 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 44.78 SS G_CDS: -0.55 Total: 44.23 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.74 -8.68 -46.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783429528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.422 kcal (2) G-P(sol) polarization free energy of solvation -37.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds