Wall clock time and date at job start Tue Mar 31 2020 14:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21250 * 120.00174 * 2 1 4 4 C 1.47189 * 120.00145 * 179.97438 * 2 1 3 5 5 C 1.39969 * 120.10174 * 174.45562 * 4 2 1 6 6 C 1.37983 * 120.11911 * 179.97438 * 5 4 2 7 7 C 1.38146 * 120.32197 * 0.02562 * 6 5 4 8 8 C 1.39697 * 120.20447 * 0.04530 * 7 6 5 9 9 C 1.47864 * 120.06082 * 179.97438 * 8 7 6 10 10 O 1.21550 * 119.99726 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00377 * 359.93500 * 9 8 7 12 12 S 1.65594 * 120.00416 * 179.97438 * 11 9 8 13 13 O 1.42098 * 104.27842 * 181.07057 * 12 11 9 14 14 O 1.42106 * 104.27736 * 308.92931 * 12 11 9 15 15 C 1.81404 * 104.44866 * 64.99841 * 12 11 9 16 16 C 1.53001 * 109.47160 * 180.02562 * 15 12 11 17 17 C 1.50695 * 109.47072 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00149 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99784 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00313 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99561 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47501 * 359.97438 * 21 19 17 23 23 H 1.48510 * 109.46897 * 119.99836 * 21 19 17 24 24 H 1.48500 * 109.46554 * 239.99185 * 21 19 17 25 25 C 1.39276 * 119.87677 * 359.92772 * 8 7 6 26 26 H 1.09005 * 109.47345 * 185.07933 * 1 2 3 27 27 H 1.09000 * 109.47471 * 305.07775 * 1 2 3 28 28 H 1.09005 * 109.47198 * 65.08068 * 1 2 3 29 29 H 1.08004 * 119.94178 * 0.02907 * 5 4 2 30 30 H 1.08001 * 119.83957 * 180.02562 * 6 5 4 31 31 H 1.07999 * 119.89558 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99303 * 359.97438 * 11 9 8 33 33 H 1.09006 * 109.46829 * 299.99663 * 15 12 11 34 34 H 1.08991 * 109.47303 * 60.00021 * 15 12 11 35 35 H 1.08997 * 109.46829 * 300.00004 * 16 15 12 36 36 H 1.09004 * 109.47021 * 59.99791 * 16 15 12 37 37 H 0.96991 * 120.00253 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.15620 * 180.31977 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 3.6377 -1.2800 -0.1164 6 6 4.3280 -2.4747 -0.1154 7 6 3.6493 -3.6723 0.0003 8 6 2.2572 -3.6828 0.1164 9 6 1.5338 -4.9666 0.2395 10 8 0.3226 -4.9743 0.3409 11 7 2.2174 -6.1281 0.2385 12 16 1.4074 -7.5657 0.3771 13 8 2.4334 -8.5487 0.3643 14 8 0.5746 -7.3905 1.5152 15 6 0.4077 -7.6694 -1.1331 16 6 -0.3977 -8.9702 -1.1234 17 6 -1.2276 -9.0566 -2.3782 18 1 -1.1852 -8.2628 -3.1094 19 6 -2.0419 -10.1485 -2.5924 20 7 -2.0939 -11.1148 -1.7019 21 14 -3.0701 -10.2559 -4.1483 22 1 -2.8333 -9.0504 -4.9824 23 1 -2.6865 -11.4702 -4.9124 24 1 -4.5084 -10.3325 -3.7867 25 6 1.5520 -2.4818 0.1169 26 1 -0.3634 -1.0237 0.0910 27 1 -0.3634 0.5906 0.8410 28 1 -0.3634 0.4330 -0.9320 29 1 4.1746 -0.3473 -0.2068 30 1 5.4043 -2.4736 -0.2055 31 1 4.1965 -4.6034 0.0008 32 1 3.1839 -6.1219 0.1567 33 1 -0.2746 -6.8204 -1.1761 34 1 1.0627 -7.6537 -2.0042 35 1 0.2843 -9.8194 -1.0801 36 1 -1.0527 -8.9855 -0.2522 37 1 -2.6664 -11.8831 -1.8527 38 1 0.4761 -2.4844 0.2115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783429528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:11 Heat of formation + Delta-G solvation = -151.578893 kcal Electronic energy + Delta-G solvation = -24434.172508 eV Core-core repulsion = 20560.854413 eV Total energy + Delta-G solvation = -3873.318095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78076 -40.69595 -38.98079 -38.28115 -37.25270 -35.98961 -35.80229 -33.18177 -33.17099 -32.38643 -30.25339 -27.65491 -25.71462 -24.95748 -23.63510 -22.52969 -21.17179 -20.83388 -19.53504 -19.03247 -18.35997 -17.73754 -17.37192 -16.88760 -16.71800 -16.58347 -16.48811 -16.32499 -16.00491 -15.75974 -15.21021 -15.10194 -15.03389 -14.49693 -13.85422 -13.77127 -13.69154 -13.39031 -13.28442 -13.17146 -13.03843 -12.96805 -12.92503 -12.83512 -12.56456 -12.34382 -12.24557 -12.04994 -11.75908 -11.55682 -11.08021 -10.86981 -10.65851 -10.24782 -10.16825 -8.27011 -6.40769 -1.04608 -0.62724 -0.22730 1.06558 1.32688 1.41238 1.42169 1.53248 1.55478 2.37112 2.52571 2.68519 2.87451 3.00354 3.06804 3.16179 3.66395 3.71092 3.85560 3.99262 4.02899 4.04811 4.14744 4.25301 4.45007 4.51021 4.60606 4.69851 4.87823 4.98007 5.08416 5.15430 5.23627 5.24712 5.29015 5.56138 5.67003 5.67869 6.04305 6.30207 6.41226 6.72284 7.29306 8.85591 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.002971 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.091457 B = 9420.978507 C =10527.367438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.402 3.598 3 O -0.494 6.494 4 C -0.193 4.193 5 C -0.033 4.033 6 C -0.127 4.127 7 C -0.040 4.040 8 C -0.167 4.167 9 C 0.582 3.418 10 O -0.522 6.522 11 N -1.034 6.034 12 S 2.601 3.399 13 O -0.966 6.966 14 O -0.975 6.975 15 C -0.578 4.578 16 C 0.022 3.978 17 C -0.539 4.539 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.933 5.933 21 Si 0.974 3.026 22 H -0.257 1.257 23 H -0.276 1.276 24 H -0.279 1.279 25 C -0.013 4.013 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.147 0.853 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.448 0.552 33 H 0.136 0.864 34 H 0.153 0.847 35 H 0.016 0.984 36 H 0.006 0.994 37 H 0.268 0.732 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.278 21.180 1.099 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.283 3.717 3 O -0.372 6.372 4 C -0.195 4.195 5 C -0.051 4.051 6 C -0.145 4.145 7 C -0.059 4.059 8 C -0.172 4.172 9 C 0.372 3.628 10 O -0.397 6.397 11 N -0.801 5.801 12 S 2.700 3.300 13 O -0.957 6.957 14 O -0.965 6.965 15 C -0.711 4.711 16 C -0.017 4.017 17 C -0.578 4.578 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.572 5.572 21 Si 0.798 3.202 22 H -0.180 1.180 23 H -0.201 1.201 24 H -0.205 1.205 25 C -0.032 4.032 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.165 0.835 30 H 0.192 0.808 31 H 0.185 0.815 32 H 0.289 0.711 33 H 0.155 0.845 34 H 0.171 0.829 35 H 0.035 0.965 36 H 0.024 0.976 37 H 0.077 0.923 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 13.755 20.978 1.989 25.164 hybrid contribution -0.531 -0.410 -0.940 1.155 sum 13.224 20.568 1.049 24.475 Atomic orbital electron populations 1.22337 0.91492 1.06249 1.06182 1.22835 0.92945 0.86792 0.69089 1.90531 1.72882 1.35134 1.38661 1.20585 0.95478 0.94388 1.09002 1.21973 0.92706 1.00315 0.90128 1.21506 1.02501 0.90354 1.00106 1.22021 0.91668 1.01135 0.91051 1.19631 0.95225 0.91277 1.11032 1.18617 0.86683 0.84692 0.72836 1.90980 1.14551 1.87402 1.46766 1.54794 1.22805 1.22339 1.80193 1.05398 0.74622 0.72452 0.77556 1.93571 1.56713 1.57336 1.88029 1.93556 1.69908 1.84466 1.48594 1.30240 1.13670 1.08329 1.18869 1.18842 0.94785 0.89609 0.98500 1.21513 1.25256 1.06037 1.05019 0.90713 1.26101 0.98224 0.95117 1.00668 1.70092 1.40091 1.09977 1.37068 0.85257 0.77862 0.78701 0.78382 1.18019 1.20102 1.20481 1.21785 1.01522 0.89913 0.89986 0.88638 0.87682 0.87204 0.83497 0.80753 0.81538 0.71081 0.84543 0.82880 0.96550 0.97570 0.92309 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.30 10.19 71.23 0.73 -1.57 16 2 C 0.40 6.60 7.22 28.04 0.20 6.80 16 3 O -0.49 -11.03 17.10 -2.94 -0.05 -11.08 16 4 C -0.19 -2.94 5.86 -20.18 -0.12 -3.06 16 5 C -0.03 -0.39 9.59 22.63 0.22 -0.18 16 6 C -0.13 -0.99 10.01 22.19 0.22 -0.77 16 7 C -0.04 -0.40 9.54 22.60 0.22 -0.18 16 8 C -0.17 -2.84 5.87 -20.13 -0.12 -2.96 16 9 C 0.58 14.12 7.51 86.79 0.65 14.78 16 10 O -0.52 -17.00 14.44 12.49 0.18 -16.82 16 11 N -1.03 -23.01 5.55 -175.59 -0.98 -23.98 16 12 S 2.60 89.93 5.11 -56.49 -0.29 89.64 16 13 O -0.97 -35.96 18.08 -127.65 -2.31 -38.26 16 14 O -0.98 -42.07 17.04 -120.72 -2.06 -44.13 16 15 C -0.58 -22.07 5.82 71.98 0.42 -21.65 16 16 C 0.02 1.13 4.98 29.85 0.15 1.28 16 17 C -0.54 -29.92 9.11 25.60 0.23 -29.68 16 18 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 19 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 20 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 21 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 C -0.01 -0.22 8.99 22.84 0.21 -0.01 16 26 H 0.09 0.93 5.62 -2.38 -0.01 0.92 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.15 1.56 7.65 -2.91 -0.02 1.53 16 30 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 31 H 0.17 0.54 6.39 -2.91 -0.02 0.52 16 32 H 0.45 5.55 6.81 -96.75 -0.66 4.89 16 33 H 0.14 5.10 7.19 -2.39 -0.02 5.08 16 34 H 0.15 4.77 8.14 -2.39 -0.02 4.75 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.15 2.45 5.53 -2.91 -0.02 2.43 16 Total: -1.00 -84.09 345.61 0.74 -83.35 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.46 Total: 9.10 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 3.47 Total: -36.88 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -0.69 Total: -80.13 kcal Atomic # 8 Polarization: -106.06 SS G_CDS: -4.23 Total: -110.30 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 89.93 SS G_CDS: -0.29 Total: 89.64 kcal Total: -84.09 0.74 -83.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783429528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.229 kcal (2) G-P(sol) polarization free energy of solvation -84.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds