Wall clock time and date at job start Tue Mar 31 2020 14:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37970 * 120.07670 * 2 1 4 4 C 1.38350 * 120.14811 * 180.25303 * 3 2 1 5 5 C 1.38387 * 120.30742 * 359.79078 * 4 3 2 6 6 C 1.37926 * 120.14476 * 359.94833 * 5 4 3 7 7 N 1.48021 * 120.07362 * 180.02562 * 6 5 4 8 8 O 1.21795 * 119.99861 * 359.97438 * 7 6 5 9 9 O 1.21800 * 119.99952 * 179.97438 * 7 6 5 10 10 C 1.39607 * 120.07678 * 179.76740 * 2 1 3 11 11 C 1.47726 * 120.15154 * 359.97438 * 10 2 1 12 12 O 1.21472 * 119.99857 * 269.72600 * 11 10 2 13 13 O 1.34713 * 119.99766 * 89.72435 * 11 10 2 14 14 C 1.45204 * 116.99526 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46588 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.46805 * 179.97438 * 15 14 13 17 17 S 1.81000 * 109.46792 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99858 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00055 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00058 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47287 * 60.00411 * 22 20 18 24 24 H 1.48500 * 109.46868 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47400 * 299.99887 * 22 20 18 26 26 H 1.09001 * 109.47600 * 270.23406 * 1 2 3 27 27 H 1.09003 * 109.47045 * 30.23678 * 1 2 3 28 28 H 1.08997 * 109.47415 * 150.23416 * 1 2 3 29 29 H 1.08002 * 119.92786 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.84373 * 179.76326 * 4 3 2 31 31 H 1.07993 * 119.92744 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47084 * 299.99744 * 14 13 11 33 33 H 1.09004 * 109.46732 * 60.00275 * 14 13 11 34 34 H 1.09000 * 109.47048 * 300.00194 * 15 14 13 35 35 H 1.08999 * 109.47127 * 60.00000 * 15 14 13 36 36 H 1.08997 * 109.46991 * 299.99960 * 16 15 14 37 37 H 1.08996 * 109.46766 * 60.00076 * 16 15 14 38 38 H 0.97001 * 120.00592 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1957 -0.0053 5 6 4.2817 0.0018 -0.0062 6 6 3.6030 -1.1989 -0.0008 7 7 4.3532 -2.4750 -0.0013 8 8 5.5711 -2.4654 -0.0069 9 8 3.7525 -3.5345 0.0039 10 6 2.2066 -1.2081 0.0049 11 6 1.4730 -2.4904 0.0107 12 8 1.1762 -3.0155 1.0650 13 8 1.1333 -3.0772 -1.1533 14 6 0.4131 -4.3354 -1.0716 15 6 0.1158 -4.8453 -2.4832 16 6 -0.6425 -6.1715 -2.3971 17 16 -0.9935 -6.7751 -4.0670 18 6 -1.8453 -8.2681 -3.6798 19 1 -2.0023 -8.5485 -2.6487 20 6 -2.3156 -9.0834 -4.7000 21 7 -2.1247 -8.7415 -5.9567 22 14 -3.2193 -10.6659 -4.2894 23 1 -4.4329 -10.3508 -3.4938 24 1 -3.6148 -11.3504 -5.5465 25 1 -2.3280 -11.5549 -3.5017 26 1 -0.3634 0.0042 1.0276 27 1 -0.3633 0.8879 -0.5175 28 1 -0.3634 -0.8920 -0.5102 29 1 1.6584 2.1293 -0.0004 30 1 4.1181 2.1331 -0.0091 31 1 5.3616 0.0103 -0.0108 32 1 1.0209 -5.0681 -0.5407 33 1 -0.5238 -4.1835 -0.5357 34 1 -0.4920 -4.1125 -3.0137 35 1 1.0526 -4.9970 -3.0195 36 1 -0.0341 -6.9040 -1.8667 37 1 -1.5791 -6.0202 -1.8607 38 1 -2.4530 -9.3115 -6.6697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805355958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:09 Heat of formation + Delta-G solvation = -74.984721 kcal Electronic energy + Delta-G solvation = -24243.668040 eV Core-core repulsion = 20373.671318 eV Total energy + Delta-G solvation = -3869.996723 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.61361 -40.90806 -39.59690 -36.93773 -36.68837 -33.99102 -33.54363 -32.62046 -32.42157 -28.36388 -27.24016 -26.60350 -25.49199 -24.27689 -22.51033 -21.45822 -21.27037 -19.34267 -18.94998 -18.32111 -17.83728 -17.41093 -17.19374 -17.04132 -15.92247 -15.87703 -14.81468 -14.77399 -14.57268 -14.43352 -14.30930 -13.58413 -13.24213 -13.03404 -12.83851 -12.77996 -12.70037 -12.33988 -12.12560 -11.85937 -11.48025 -11.40034 -11.35480 -11.13902 -10.99356 -10.98061 -10.80983 -10.64478 -10.28646 -10.22088 -9.79939 -9.62720 -9.05158 -8.34302 -6.54644 -6.22869 -3.93895 -0.72187 0.10131 0.88058 0.93328 1.78256 2.22145 2.58811 3.22365 3.24734 3.28923 3.51907 3.60996 3.86987 4.07954 4.16838 4.20182 4.22190 4.42499 4.70919 4.83197 4.98098 5.00213 5.11294 5.13898 5.20046 5.25100 5.37298 5.38196 5.42225 5.50669 5.65350 5.80226 5.86163 5.99662 6.12833 6.33823 6.47190 6.67862 7.27510 7.42383 7.60706 8.36560 9.23369 10.85271 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.002319 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.436517 B =12070.856379 C =12595.682232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.041 4.041 3 C -0.070 4.070 4 C -0.095 4.095 5 C -0.061 4.061 6 C -0.009 4.009 7 N 0.022 4.978 8 O -0.141 6.141 9 O -0.145 6.145 10 C -0.042 4.042 11 C 0.515 3.485 12 O -0.481 6.481 13 O -0.341 6.341 14 C 0.074 3.926 15 C -0.097 4.097 16 C -0.114 4.114 17 S -0.124 6.124 18 C -0.518 4.518 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.870 5.870 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.949 25.465 12.886 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.042 4.042 3 C -0.088 4.088 4 C -0.114 4.114 5 C -0.080 4.080 6 C -0.091 4.091 7 N 0.544 4.456 8 O -0.360 6.360 9 O -0.361 6.361 10 C -0.044 4.044 11 C 0.356 3.644 12 O -0.368 6.368 13 O -0.257 6.257 14 C -0.001 4.001 15 C -0.136 4.136 16 C -0.262 4.262 17 S 0.104 5.896 18 C -0.666 4.666 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.506 5.506 22 Si 0.746 3.254 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.180 0.820 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.664 26.246 11.965 30.421 hybrid contribution -0.602 -2.014 1.509 2.588 sum 9.062 24.232 13.474 29.170 Atomic orbital electron populations 1.21024 0.88403 1.04850 1.04153 1.20033 0.97616 0.90069 0.96512 1.21511 0.94395 0.98140 0.94776 1.21419 0.94142 0.97911 0.97884 1.21070 1.02509 0.89304 0.95076 1.21116 0.90340 0.85115 1.12574 1.43528 1.01383 1.02608 0.98128 1.94531 0.95026 1.94008 1.52402 1.94637 1.70111 1.18254 1.53054 1.18956 0.90538 0.93529 1.01409 1.20435 0.76912 0.83740 0.83302 1.90905 1.50741 1.62802 1.32337 1.86574 1.68455 1.38260 1.32427 1.23409 0.95466 0.81157 1.00067 1.21293 1.01904 0.96726 0.93651 1.23176 1.01367 0.97389 1.04314 1.84648 1.74358 1.27926 1.02619 1.22657 1.41684 1.06905 0.95377 0.90857 1.25015 0.95819 0.98419 0.94493 1.70005 1.44044 1.37800 0.98703 0.86206 0.79758 0.81647 0.77827 1.19922 1.20817 1.19867 0.89289 0.89280 0.90356 0.82876 0.82678 0.81979 0.90244 0.90983 0.90454 0.90196 0.91509 0.91721 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 9.62 36.00 0.35 -0.44 16 2 C -0.04 -0.31 5.91 -104.21 -0.62 -0.92 16 3 C -0.07 -0.29 9.69 -39.64 -0.38 -0.67 16 4 C -0.10 -0.35 10.04 -39.48 -0.40 -0.75 16 5 C -0.06 -0.40 9.55 -39.64 -0.38 -0.78 16 6 C -0.01 -0.09 6.88 -79.53 -0.55 -0.64 16 7 N 0.02 0.31 4.45 34.16 0.15 0.46 16 8 O -0.14 -1.89 18.45 -29.46 -0.54 -2.43 16 9 O -0.15 -2.42 16.31 -34.76 -0.57 -2.98 16 10 C -0.04 -0.47 5.75 -104.98 -0.60 -1.08 16 11 C 0.52 7.43 3.24 34.61 0.11 7.54 16 12 O -0.48 -8.03 16.78 -23.26 -0.39 -8.42 16 13 O -0.34 -5.12 10.17 -42.94 -0.44 -5.56 16 14 C 0.07 1.12 5.48 37.16 0.20 1.32 16 15 C -0.10 -1.64 5.60 -26.73 -0.15 -1.79 16 16 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 17 S -0.12 -3.24 21.44 -107.50 -2.30 -5.55 16 18 C -0.52 -14.90 9.50 30.94 0.29 -14.60 16 19 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 22 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.30 8.09 -51.93 -0.42 -0.11 16 28 H 0.08 0.63 7.08 -51.93 -0.37 0.26 16 29 H 0.15 0.10 8.06 -52.49 -0.42 -0.32 16 30 H 0.16 0.03 8.06 -52.49 -0.42 -0.40 16 31 H 0.16 0.78 7.61 -52.49 -0.40 0.38 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -35.51 356.10 -9.55 -45.07 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -4.54 Total: -4.30 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.01 Total: -12.96 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.89 Total: -24.86 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.94 Total: -19.39 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.30 Total: -5.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.51 -9.55 -45.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805355958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.917 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds