Wall clock time and date at job start Tue Mar 31 2020 14:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37970 * 120.07670 * 2 1 4 4 C 1.38350 * 120.14811 * 180.25303 * 3 2 1 5 5 C 1.38387 * 120.30742 * 359.79078 * 4 3 2 6 6 C 1.37926 * 120.14476 * 359.94833 * 5 4 3 7 7 N 1.48021 * 120.07362 * 180.02562 * 6 5 4 8 8 O 1.21795 * 119.99861 * 359.97438 * 7 6 5 9 9 O 1.21800 * 119.99952 * 179.97438 * 7 6 5 10 10 C 1.39607 * 120.07678 * 179.76740 * 2 1 3 11 11 C 1.47726 * 120.15154 * 359.97438 * 10 2 1 12 12 O 1.21472 * 119.99857 * 269.72600 * 11 10 2 13 13 O 1.34713 * 119.99766 * 89.72435 * 11 10 2 14 14 C 1.45204 * 116.99526 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46588 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.46805 * 179.97438 * 15 14 13 17 17 S 1.81000 * 109.46792 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99858 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00055 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00058 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47287 * 60.00411 * 22 20 18 24 24 H 1.48500 * 109.46868 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47400 * 299.99887 * 22 20 18 26 26 H 1.09001 * 109.47600 * 270.23406 * 1 2 3 27 27 H 1.09003 * 109.47045 * 30.23678 * 1 2 3 28 28 H 1.08997 * 109.47415 * 150.23416 * 1 2 3 29 29 H 1.08002 * 119.92786 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.84373 * 179.76326 * 4 3 2 31 31 H 1.07993 * 119.92744 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47084 * 299.99744 * 14 13 11 33 33 H 1.09004 * 109.46732 * 60.00275 * 14 13 11 34 34 H 1.09000 * 109.47048 * 300.00194 * 15 14 13 35 35 H 1.08999 * 109.47127 * 60.00000 * 15 14 13 36 36 H 1.08997 * 109.46991 * 299.99960 * 16 15 14 37 37 H 1.08996 * 109.46766 * 60.00076 * 16 15 14 38 38 H 0.97001 * 120.00592 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1957 -0.0053 5 6 4.2817 0.0018 -0.0062 6 6 3.6030 -1.1989 -0.0008 7 7 4.3532 -2.4750 -0.0013 8 8 5.5711 -2.4654 -0.0069 9 8 3.7525 -3.5345 0.0039 10 6 2.2066 -1.2081 0.0049 11 6 1.4730 -2.4904 0.0107 12 8 1.1762 -3.0155 1.0650 13 8 1.1333 -3.0772 -1.1533 14 6 0.4131 -4.3354 -1.0716 15 6 0.1158 -4.8453 -2.4832 16 6 -0.6425 -6.1715 -2.3971 17 16 -0.9935 -6.7751 -4.0670 18 6 -1.8453 -8.2681 -3.6798 19 1 -2.0023 -8.5485 -2.6487 20 6 -2.3156 -9.0834 -4.7000 21 7 -2.1247 -8.7415 -5.9567 22 14 -3.2193 -10.6659 -4.2894 23 1 -4.4329 -10.3508 -3.4938 24 1 -3.6148 -11.3504 -5.5465 25 1 -2.3280 -11.5549 -3.5017 26 1 -0.3634 0.0042 1.0276 27 1 -0.3633 0.8879 -0.5175 28 1 -0.3634 -0.8920 -0.5102 29 1 1.6584 2.1293 -0.0004 30 1 4.1181 2.1331 -0.0091 31 1 5.3616 0.0103 -0.0108 32 1 1.0209 -5.0681 -0.5407 33 1 -0.5238 -4.1835 -0.5357 34 1 -0.4920 -4.1125 -3.0137 35 1 1.0526 -4.9970 -3.0195 36 1 -0.0341 -6.9040 -1.8667 37 1 -1.5791 -6.0202 -1.8607 38 1 -2.4530 -9.3115 -6.6697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805355958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:09 Heat of formation + Delta-G solvation = -95.192490 kcal Electronic energy + Delta-G solvation = -24244.544315 eV Core-core repulsion = 20373.671318 eV Total energy + Delta-G solvation = -3870.872997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.55419 -41.89709 -40.34425 -38.04099 -37.82152 -35.02416 -34.60805 -34.49831 -33.26506 -29.13005 -28.19361 -27.85450 -27.44972 -25.14923 -23.27614 -22.84070 -22.20888 -20.18955 -19.91765 -19.61173 -19.15336 -18.78481 -18.28835 -18.05112 -16.91005 -16.81644 -16.53829 -16.07567 -15.73987 -15.28446 -15.08948 -14.94800 -14.36670 -14.15434 -13.88487 -13.70438 -13.50933 -13.26856 -13.18734 -12.95777 -12.94275 -12.83795 -12.70194 -12.52930 -12.50203 -12.45827 -12.42380 -11.99384 -11.63706 -11.52594 -11.15365 -10.72751 -10.40032 -10.33206 -8.70603 -8.39222 -6.16440 -1.53412 -0.41300 0.08807 0.12364 0.71956 1.17333 1.34539 1.40627 1.47880 1.73456 2.07880 2.25425 2.95206 3.01021 3.11508 3.30571 3.48283 3.63118 3.76396 3.81580 3.85103 3.88243 4.06987 4.17818 4.26701 4.36271 4.43731 4.55510 4.61684 4.66274 4.85063 4.90062 4.94201 4.98653 5.01292 5.03688 5.21246 5.37170 5.38354 6.16385 6.21230 6.29931 7.02861 8.70075 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.002319 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.436517 B =12070.856379 C =12595.682232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.044 4.044 3 C -0.046 4.046 4 C -0.071 4.071 5 C -0.054 4.054 6 C -0.038 4.038 7 N 0.023 4.977 8 O -0.114 6.114 9 O -0.235 6.235 10 C -0.081 4.081 11 C 0.519 3.481 12 O -0.517 6.517 13 O -0.348 6.348 14 C 0.081 3.919 15 C -0.084 4.084 16 C -0.091 4.091 17 S -0.183 6.183 18 C -0.542 4.542 19 H 0.074 0.926 20 C 0.016 3.984 21 N -0.907 5.907 22 Si 0.995 3.005 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.266 1.266 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.050 0.950 29 H 0.203 0.797 30 H 0.208 0.792 31 H 0.183 0.817 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.173 29.167 13.804 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.045 4.045 3 C -0.063 4.063 4 C -0.089 4.089 5 C -0.073 4.073 6 C -0.121 4.121 7 N 0.538 4.462 8 O -0.345 6.345 9 O -0.430 6.430 10 C -0.084 4.084 11 C 0.362 3.638 12 O -0.406 6.406 13 O -0.264 6.264 14 C 0.006 3.994 15 C -0.122 4.122 16 C -0.240 4.240 17 S 0.046 5.954 18 C -0.689 4.689 19 H 0.092 0.908 20 C -0.189 4.189 21 N -0.543 5.543 22 Si 0.816 3.184 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.191 1.191 26 H 0.111 0.889 27 H 0.142 0.858 28 H 0.069 0.931 29 H 0.220 0.780 30 H 0.225 0.775 31 H 0.200 0.800 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.774 29.854 12.881 33.951 hybrid contribution -0.511 -2.822 1.262 3.133 sum 9.264 27.032 14.143 31.884 Atomic orbital electron populations 1.21120 0.87823 1.05175 1.04569 1.20396 0.98251 0.89877 0.96010 1.22142 0.94840 0.98287 0.91076 1.22088 0.94110 0.98364 0.94351 1.21587 1.03703 0.88497 0.93485 1.21402 0.90251 0.84301 1.16163 1.44031 1.01449 1.03615 0.97142 1.94450 0.95738 1.94322 1.50005 1.94642 1.70277 1.20287 1.57822 1.19039 0.90779 0.92967 1.05578 1.21089 0.75946 0.84529 0.82252 1.90854 1.52365 1.64145 1.33211 1.86550 1.68555 1.37822 1.33498 1.23141 0.95938 0.81626 0.98659 1.21094 1.01146 0.95219 0.94753 1.23051 1.02166 0.98682 1.00088 1.84618 1.74560 1.28159 1.08081 1.23021 1.42284 1.07895 0.95731 0.90757 1.26074 0.96458 1.02171 0.94195 1.70136 1.44994 1.39351 0.99818 0.85056 0.78530 0.76758 0.78017 1.18788 1.19828 1.19083 0.88852 0.85772 0.93137 0.77980 0.77497 0.80008 0.91312 0.89824 0.89682 0.90912 0.91593 0.90830 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.62 71.23 0.69 -0.67 16 2 C -0.04 -0.55 5.91 -19.60 -0.12 -0.67 16 3 C -0.05 -0.12 9.69 22.23 0.22 0.10 16 4 C -0.07 -0.10 10.04 22.33 0.22 0.12 16 5 C -0.05 -0.53 9.55 22.23 0.21 -0.32 16 6 C -0.04 -0.82 6.88 36.64 0.25 -0.57 16 7 N 0.02 0.67 4.45 -45.82 -0.20 0.46 16 8 O -0.11 -3.09 18.45 18.89 0.35 -2.74 16 9 O -0.23 -8.67 16.31 23.95 0.39 -8.28 16 10 C -0.08 -1.84 5.75 -20.10 -0.12 -1.96 16 11 C 0.52 16.04 3.24 70.33 0.23 16.27 16 12 O -0.52 -18.70 16.78 23.77 0.40 -18.30 16 13 O -0.35 -11.22 10.17 -53.92 -0.55 -11.77 16 14 C 0.08 2.63 5.48 71.98 0.39 3.03 16 15 C -0.08 -2.93 5.60 30.60 0.17 -2.76 16 16 C -0.09 -3.80 5.67 71.98 0.41 -3.39 16 17 S -0.18 -9.92 21.44 -56.49 -1.21 -11.13 16 18 C -0.54 -31.79 9.50 67.95 0.65 -31.14 16 19 H 0.07 4.19 7.80 -2.91 -0.02 4.17 16 20 C 0.02 0.93 5.49 84.86 0.47 1.40 16 21 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 22 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.12 0.36 8.09 -2.39 -0.02 0.34 16 28 H 0.05 0.82 7.08 -2.39 -0.02 0.80 16 29 H 0.20 -1.36 8.06 -2.91 -0.02 -1.39 16 30 H 0.21 -1.70 8.06 -2.91 -0.02 -1.72 16 31 H 0.18 1.04 7.61 -2.91 -0.02 1.02 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.07 2.75 8.14 -2.40 -0.02 2.73 16 37 H 0.07 2.94 8.14 -2.40 -0.02 2.92 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -84.74 356.10 6.24 -78.49 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.09 Total: 2.24 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.67 Total: -20.56 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.08 Total: -54.53 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: 0.59 Total: -41.09 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.21 Total: -11.13 kcal Total: -84.74 6.24 -78.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805355958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.701 kcal (2) G-P(sol) polarization free energy of solvation -84.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds