Wall clock time and date at job start Tue Mar 31 2020 14:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37964 * 119.92400 * 2 1 4 4 C 1.39607 * 119.84735 * 179.97438 * 3 2 1 5 5 C 1.47730 * 120.15307 * 180.02562 * 4 3 2 6 6 O 1.21469 * 119.99532 * 359.97438 * 5 4 3 7 7 O 1.34709 * 120.00073 * 179.97438 * 5 4 3 8 8 C 1.45201 * 116.99948 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47001 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.47009 * 180.02562 * 9 8 7 11 11 S 1.81000 * 109.47319 * 179.97438 * 10 9 8 12 12 C 1.76201 * 100.00070 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99696 * 359.97438 * 12 11 10 14 14 C 1.38791 * 119.99849 * 179.97438 * 12 11 10 15 15 N 1.31630 * 120.00452 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99895 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47489 * 60.00022 * 16 14 12 18 18 H 1.48498 * 109.47220 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47029 * 299.99542 * 16 14 12 20 20 C 1.39656 * 119.69930 * 0.03552 * 4 3 2 21 21 C 1.37915 * 119.84817 * 359.97438 * 20 4 3 22 22 N 1.48017 * 119.92887 * 180.02562 * 21 20 4 23 23 O 1.21792 * 120.00569 * 179.97438 * 22 21 20 24 24 O 1.21801 * 119.99221 * 359.97438 * 22 21 20 25 25 C 1.38343 * 119.92283 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47051 * 269.99234 * 1 2 3 27 27 H 1.09007 * 109.46886 * 29.99051 * 1 2 3 28 28 H 1.09001 * 109.46993 * 149.99038 * 1 2 3 29 29 H 1.07996 * 120.08077 * 0.02808 * 3 2 1 30 30 H 1.09003 * 109.47086 * 300.00350 * 8 7 5 31 31 H 1.08991 * 109.46991 * 60.00048 * 8 7 5 32 32 H 1.08997 * 109.47149 * 299.99399 * 9 8 7 33 33 H 1.09000 * 109.47425 * 60.00241 * 9 8 7 34 34 H 1.09003 * 109.47061 * 299.99892 * 10 9 8 35 35 H 1.09005 * 109.47255 * 59.99654 * 10 9 8 36 36 H 0.97001 * 120.00849 * 179.97438 * 15 14 12 37 37 H 1.07999 * 120.07329 * 180.02562 * 20 4 3 38 38 H 1.07996 * 119.85047 * 0.27423 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1957 0.0000 4 6 3.5913 1.1938 0.0005 5 6 4.3351 2.4703 0.0011 6 8 3.7319 3.5246 0.0006 7 8 5.6822 2.4649 0.0022 8 6 6.3465 3.7560 0.0033 9 6 7.8625 3.5494 0.0037 10 6 8.5625 4.9099 0.0055 11 16 10.3560 4.6657 0.0068 12 6 10.8933 6.3438 0.0079 13 1 10.1673 7.1432 0.0073 14 6 12.2497 6.6381 0.0097 15 7 13.1347 5.6637 0.0109 16 14 12.8194 8.4171 0.0116 17 1 12.3024 9.1012 1.2240 18 1 14.3037 8.4616 0.0127 19 1 12.3051 9.1029 -1.2010 20 6 4.2816 -0.0202 0.0003 21 6 3.5811 -1.2081 0.0001 22 7 4.3109 -2.4959 0.0005 23 8 3.6936 -3.5458 0.0008 24 8 5.5288 -2.5055 0.0005 25 6 2.1971 -1.1990 -0.0005 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8901 -0.5137 28 1 -0.3633 -0.8899 -0.5140 29 1 1.6554 2.1310 0.0005 30 1 6.0565 4.3146 -0.8867 31 1 6.0552 4.3137 0.8932 32 1 8.1528 2.9908 0.8935 33 1 8.1535 2.9919 -0.8865 34 1 8.2723 5.4691 -0.8840 35 1 8.2715 5.4672 0.8959 36 1 14.0826 5.8693 0.0118 37 1 5.3616 -0.0287 0.0012 38 1 1.6535 -2.1321 -0.0054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805426523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:10 Heat of formation + Delta-G solvation = -97.247309 kcal Electronic energy + Delta-G solvation = -23259.697132 eV Core-core repulsion = 19388.735031 eV Total energy + Delta-G solvation = -3870.962101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.37199 -41.92795 -40.40326 -37.98035 -37.77085 -35.07704 -34.61113 -34.40553 -33.33534 -28.60542 -28.20802 -27.79906 -27.53732 -25.58578 -23.11122 -22.81339 -22.06369 -20.14379 -19.78477 -19.56650 -18.71479 -18.70205 -17.97776 -17.88793 -17.48252 -16.90436 -16.68692 -16.15220 -16.11304 -15.13558 -15.00846 -14.73630 -14.31794 -14.20211 -13.84908 -13.55486 -13.36384 -13.26927 -13.16617 -12.98653 -12.94257 -12.76341 -12.67629 -12.47415 -12.45939 -12.36512 -12.35901 -11.98547 -11.60423 -11.51453 -11.14750 -10.90512 -10.37107 -10.32632 -8.69557 -8.38535 -6.15681 -1.41018 -0.80698 0.08577 0.19343 1.08997 1.15352 1.34534 1.40718 1.48355 1.75802 2.11185 2.26255 2.95891 2.97121 3.18598 3.28590 3.49812 3.54165 3.63926 3.75202 3.81161 3.90016 4.10715 4.16217 4.29933 4.32817 4.44324 4.55988 4.65251 4.68692 4.81940 4.85721 4.98077 4.99916 5.07802 5.15868 5.26094 5.35879 5.38757 6.16691 6.35971 6.37284 7.03598 8.70455 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.002014 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.966610 B =13897.242460 C =15197.157652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.075 4.075 3 C 0.000 4.000 4 C -0.123 4.123 5 C 0.513 3.487 6 O -0.516 6.516 7 O -0.353 6.353 8 C 0.082 3.918 9 C -0.089 4.089 10 C -0.091 4.091 11 S -0.188 6.188 12 C -0.540 4.540 13 H 0.076 0.924 14 C 0.014 3.986 15 N -0.907 5.907 16 Si 0.995 3.005 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.012 4.012 21 C -0.062 4.062 22 N 0.029 4.971 23 O -0.144 6.144 24 O -0.199 6.199 25 C -0.017 4.017 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.173 0.827 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.272 0.728 37 H 0.160 0.840 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.211 -12.131 -0.008 32.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.018 4.018 4 C -0.125 4.125 5 C 0.358 3.642 6 O -0.406 6.406 7 O -0.269 6.269 8 C 0.007 3.993 9 C -0.128 4.128 10 C -0.239 4.239 11 S 0.040 5.960 12 C -0.688 4.688 13 H 0.094 0.906 14 C -0.191 4.191 15 N -0.543 5.543 16 Si 0.816 3.184 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.031 4.031 21 C -0.145 4.145 22 N 0.546 4.454 23 O -0.367 6.367 24 O -0.405 6.405 25 C -0.036 4.036 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.191 0.809 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.178 0.822 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -29.802 -12.155 -0.009 32.186 hybrid contribution 0.718 1.777 0.006 1.916 sum -29.085 -10.379 -0.003 30.881 Atomic orbital electron populations 1.21020 0.85605 1.05666 1.04943 1.20201 0.99266 0.89547 0.98551 1.21944 0.90999 1.01152 0.87732 1.18943 0.94104 0.89126 1.10339 1.21049 0.81256 0.89291 0.72594 1.90861 1.69881 1.33434 1.46466 1.86509 1.20110 1.36904 1.83396 1.23151 0.91281 0.81165 1.03674 1.21131 0.91071 0.96032 1.04524 1.23055 0.97304 0.99742 1.03847 1.84706 1.00201 1.13996 1.97077 1.23016 0.95145 0.91553 1.59074 0.90630 1.26082 0.95673 1.03557 0.93748 1.70142 1.02175 1.34195 1.47790 0.85056 0.77238 0.76696 0.79372 1.18889 1.20070 1.18898 1.21292 1.02853 0.89273 0.89680 1.21065 0.93473 0.82545 1.17454 1.43828 1.01256 1.03235 0.97089 1.94498 1.69097 1.21010 1.52057 1.94628 0.95949 1.94483 1.55485 1.21584 0.89698 1.02265 0.90053 0.88548 0.89070 0.88784 0.80940 0.90062 0.90057 0.90286 0.90275 0.91118 0.91121 0.91918 0.82204 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.03 10.01 71.24 0.71 0.74 16 2 C -0.07 -0.47 5.87 -19.90 -0.12 -0.58 16 3 C 0.00 0.00 9.24 22.54 0.21 0.21 16 4 C -0.12 -2.02 5.87 -20.10 -0.12 -2.13 16 5 C 0.51 11.38 7.90 70.33 0.56 11.93 16 6 O -0.52 -13.22 16.14 19.94 0.32 -12.90 16 7 O -0.35 -8.67 9.47 -56.19 -0.53 -9.20 16 8 C 0.08 2.10 5.48 71.98 0.39 2.50 16 9 C -0.09 -2.74 5.60 30.59 0.17 -2.57 16 10 C -0.09 -3.48 5.67 71.98 0.41 -3.07 16 11 S -0.19 -9.88 21.44 -56.49 -1.21 -11.09 16 12 C -0.54 -30.82 9.50 67.95 0.65 -30.17 16 13 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 14 C 0.01 0.82 5.49 84.86 0.47 1.29 16 15 N -0.91 -54.58 13.22 21.65 0.29 -54.29 16 16 Si 0.99 43.60 29.55 68.60 2.03 45.62 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 20 C -0.01 -0.20 9.12 22.54 0.21 0.00 16 21 C -0.06 -1.02 6.84 36.34 0.25 -0.77 16 22 N 0.03 0.64 4.45 -46.56 -0.21 0.43 16 23 O -0.14 -3.11 18.44 18.90 0.35 -2.76 16 24 O -0.20 -5.33 18.44 18.88 0.35 -4.98 16 25 C -0.02 -0.16 9.20 22.33 0.21 0.05 16 26 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.09 -0.14 8.08 -2.38 -0.02 -0.16 16 28 H 0.09 -0.23 8.08 -2.39 -0.02 -0.25 16 29 H 0.17 1.29 7.65 -2.91 -0.02 1.27 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.16 3.12 7.16 -2.91 -0.02 3.10 16 38 H 0.18 0.85 7.60 -2.91 -0.02 0.83 16 Total: -1.00 -72.76 359.95 6.46 -66.30 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.09 Total: 5.45 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 3.99 Total: -22.59 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.08 Total: -53.86 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: 0.49 Total: -29.84 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -9.88 SS G_CDS: -1.21 Total: -11.09 kcal Total: -72.76 6.46 -66.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805426523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.944 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds