Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33618 * 116.99581 * 2 1 4 4 C 1.46500 * 119.61557 * 1.35241 * 3 2 1 5 5 O 1.21728 * 119.99819 * 269.11810 * 4 3 2 6 6 N 1.34775 * 120.00203 * 88.84148 * 4 3 2 7 7 C 1.46498 * 120.00086 * 355.23936 * 6 4 3 8 8 C 1.50695 * 109.47382 * 89.99495 * 7 6 4 9 9 H 1.07996 * 120.00300 * 359.97438 * 8 7 6 10 10 C 1.37884 * 120.00405 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99188 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00256 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47267 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46860 * 120.00417 * 12 10 8 15 15 H 1.48497 * 109.47219 * 240.00071 * 12 10 8 16 16 C 1.46498 * 119.99985 * 175.23228 * 6 4 3 17 17 C 1.53000 * 109.47110 * 94.40128 * 16 6 4 18 18 F 1.39908 * 109.47060 * 59.99654 * 17 16 6 19 19 F 1.39900 * 109.47382 * 179.97438 * 17 16 6 20 20 F 1.39899 * 109.47096 * 299.99927 * 17 16 6 21 21 S 1.76550 * 120.77059 * 181.07469 * 3 2 1 22 22 C 1.82081 * 101.57345 * 346.20338 * 21 3 2 23 23 C 1.53757 * 107.24845 * 43.70095 * 22 21 3 24 24 O 1.33557 * 116.98794 * 180.28001 * 2 1 3 25 25 H 1.08996 * 109.47158 * 84.87426 * 1 2 3 26 26 H 1.09003 * 109.46940 * 204.87480 * 1 2 3 27 27 H 1.09002 * 109.47374 * 324.87412 * 1 2 3 28 28 H 1.09002 * 109.47464 * 209.99609 * 7 6 4 29 29 H 1.09005 * 109.47144 * 330.00014 * 7 6 4 30 30 H 0.97012 * 119.99245 * 179.97438 * 11 10 8 31 31 H 1.09008 * 109.47004 * 214.39715 * 16 6 4 32 32 H 1.08992 * 109.47300 * 334.40091 * 16 6 4 33 33 H 1.09002 * 109.90034 * 163.13844 * 22 21 3 34 34 H 1.08998 * 109.89613 * 284.26327 * 22 21 3 35 35 H 1.08996 * 109.54464 * 54.56285 * 23 22 21 36 36 H 1.08997 * 109.54233 * 174.82839 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1136 1.1906 0.0000 4 6 1.3077 2.4136 0.0301 5 8 0.9643 2.9420 -1.0114 6 7 0.9418 2.9508 1.2108 7 6 1.2599 2.2569 2.4612 8 6 2.6079 2.7111 2.9588 9 1 3.1715 3.4431 2.3995 10 6 3.1222 2.1914 4.1278 11 7 2.4365 1.2989 4.8082 12 14 4.7934 2.7539 4.7443 13 1 5.3561 3.7562 3.8042 14 1 4.6445 3.3661 6.0891 15 1 5.7078 1.5870 4.8302 16 6 0.2261 4.2286 1.2438 17 6 -1.2807 3.9680 1.2959 18 9 -1.5871 3.2319 2.4456 19 9 -1.9642 5.1882 1.3280 20 9 -1.6685 3.2455 0.1625 21 16 3.8750 1.3069 -0.0285 22 6 4.3605 -0.4011 0.3744 23 6 3.4583 -1.3372 -0.4466 24 8 2.1131 -1.1901 -0.0058 25 1 -0.3633 0.0918 -1.0235 26 1 -0.3633 -0.9324 0.4323 27 1 -0.3634 0.8405 0.5913 28 1 0.5003 2.4874 3.2081 29 1 1.2814 1.1814 2.2846 30 1 2.7986 0.9329 5.6305 31 1 0.5282 4.7915 2.1270 32 1 0.4648 4.8020 0.3482 33 1 5.4046 -0.5630 0.1065 34 1 4.2166 -0.5864 1.4388 35 1 3.5265 -1.0757 -1.5026 36 1 3.7780 -2.3694 -0.3038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813401313.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = -204.100273 kcal Electronic energy + Delta-G solvation = -27430.431114 eV Core-core repulsion = 23012.978781 eV Total energy + Delta-G solvation = -4417.452334 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.075 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.68167 -47.23579 -47.12456 -39.99691 -38.96029 -35.27457 -33.41634 -32.67131 -31.21012 -29.49657 -27.62436 -26.80802 -24.37095 -23.18933 -23.03507 -20.75954 -18.94049 -18.15266 -18.12056 -17.61548 -17.23060 -16.83480 -16.29157 -16.01931 -15.53703 -15.14744 -14.50579 -14.21093 -14.11540 -14.06043 -13.73840 -13.61423 -13.36466 -13.33030 -13.30039 -13.04309 -12.92403 -12.43607 -12.14152 -12.06491 -11.93948 -11.83542 -11.74220 -11.39803 -11.06930 -10.93289 -10.81631 -10.26005 -9.83639 -9.79840 -9.58136 -8.94864 -8.55460 -8.09769 -6.81349 -6.16641 -4.20473 1.64416 2.09080 2.65288 2.98435 3.17844 3.21408 3.30461 3.34592 3.44781 3.61962 4.25307 4.35102 4.44653 4.56709 4.69907 5.03371 5.13498 5.15272 5.18938 5.34385 5.52146 5.55387 5.69366 5.73721 5.78687 5.86406 5.95133 6.32305 6.41643 7.12436 7.30165 7.62799 7.76581 7.96804 8.03551 8.58953 8.85183 9.44411 10.91303 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.010311 B = 0.007421 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.904229 B = 3772.367774 C = 5462.858360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.123 3.877 3 C -0.245 4.245 4 C 0.599 3.401 5 O -0.545 6.545 6 N -0.586 5.586 7 C 0.233 3.767 8 C -0.522 4.522 9 H 0.065 0.935 10 C 0.067 3.933 11 N -0.892 5.892 12 Si 0.892 3.108 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.080 3.920 17 C 0.431 3.569 18 F -0.178 7.178 19 F -0.189 7.189 20 F -0.180 7.180 21 S -0.072 6.072 22 C -0.155 4.155 23 C 0.063 3.937 24 O -0.306 6.306 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 -2.673 -7.552 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.065 3.935 3 C -0.361 4.361 4 C 0.386 3.614 5 O -0.424 6.424 6 N -0.317 5.317 7 C 0.114 3.886 8 C -0.561 4.561 9 H 0.083 0.917 10 C -0.136 4.136 11 N -0.531 5.531 12 Si 0.720 3.280 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.046 4.046 17 C 0.375 3.625 18 F -0.160 7.160 19 F -0.171 7.171 20 F -0.162 7.162 21 S 0.169 5.831 22 C -0.304 4.304 23 C -0.014 4.014 24 O -0.219 6.219 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.741 -1.735 -8.065 8.283 hybrid contribution 0.190 -0.705 1.010 1.246 sum -0.551 -2.440 -7.055 7.486 Atomic orbital electron populations 1.20954 0.87826 1.04283 1.03522 1.20265 0.93982 0.83102 0.96174 1.22194 0.97880 0.95504 1.20475 1.17182 0.77928 0.83036 0.83223 1.90768 1.56271 1.62703 1.32703 1.48154 1.54061 1.20369 1.09101 1.19698 0.97275 0.93083 0.78513 1.21390 1.02427 1.24917 1.07339 0.91688 1.24851 0.97509 0.94856 0.96355 1.69949 1.37938 1.28848 1.16390 0.86518 0.84048 0.78764 0.78671 1.19444 1.21065 1.21012 1.22453 0.84384 0.89737 1.08074 1.21545 0.93225 0.74007 0.73714 1.93205 1.94556 1.77745 1.50457 1.93143 1.82699 1.44943 1.96295 1.93186 1.92801 1.78479 1.51719 1.85483 0.97326 1.13271 1.87063 1.24436 1.03784 0.96626 1.05557 1.23085 0.79631 1.01037 0.97660 1.85069 1.28352 1.28393 1.80047 0.89828 0.90100 0.89824 0.93674 0.93864 0.92734 0.85621 0.86390 0.86107 0.87373 0.90745 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.38 36.01 0.34 -1.42 16 2 C 0.12 2.23 5.92 -35.92 -0.21 2.02 16 3 C -0.24 -4.87 4.39 -37.87 -0.17 -5.03 16 4 C 0.60 12.59 4.88 -12.93 -0.06 12.52 16 5 O -0.55 -12.14 16.26 5.16 0.08 -12.06 16 6 N -0.59 -12.02 2.11 -176.67 -0.37 -12.39 16 7 C 0.23 5.40 4.53 -5.20 -0.02 5.37 16 8 C -0.52 -13.06 9.38 -34.44 -0.32 -13.39 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -24.19 13.29 55.43 0.74 -23.45 16 12 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.08 1.40 5.45 -4.04 -0.02 1.38 16 17 C 0.43 7.32 3.29 37.16 0.12 7.44 16 18 F -0.18 -3.25 15.82 2.25 0.04 -3.21 16 19 F -0.19 -2.95 17.32 2.25 0.04 -2.91 16 20 F -0.18 -3.25 16.57 2.25 0.04 -3.21 16 21 S -0.07 -1.33 22.32 -107.50 -2.40 -3.73 16 22 C -0.16 -2.22 6.78 37.55 0.25 -1.97 16 23 C 0.06 0.79 6.92 37.55 0.26 1.05 16 24 O -0.31 -4.95 9.88 -12.81 -0.13 -5.07 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.51 6.40 -51.93 -0.33 1.18 16 28 H 0.05 1.10 6.86 -51.93 -0.36 0.75 16 29 H 0.04 1.07 6.31 -51.93 -0.33 0.75 16 30 H 0.26 6.82 8.31 -40.81 -0.34 6.48 16 31 H 0.13 2.01 8.11 -51.92 -0.42 1.59 16 32 H 0.12 1.93 7.36 -51.93 -0.38 1.55 16 33 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 35 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 36 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -29.72 330.81 -5.84 -35.56 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.90 Total: 0.59 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 0.07 Total: 9.60 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.36 Total: -35.84 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.04 Total: -17.13 kcal Atomic # 9 Polarization: -9.45 SS G_CDS: 0.11 Total: -9.34 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.40 Total: -3.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.72 -5.84 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813401313.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.544 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds