Wall clock time and date at job start Tue Mar 31 2020 14:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33618 * 116.99581 * 2 1 4 4 C 1.46500 * 119.61557 * 1.35241 * 3 2 1 5 5 O 1.21728 * 119.99819 * 269.11810 * 4 3 2 6 6 N 1.34775 * 120.00203 * 88.84148 * 4 3 2 7 7 C 1.46498 * 120.00086 * 355.23936 * 6 4 3 8 8 C 1.50695 * 109.47382 * 89.99495 * 7 6 4 9 9 H 1.07996 * 120.00300 * 359.97438 * 8 7 6 10 10 C 1.37884 * 120.00405 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99188 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00256 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47267 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46860 * 120.00417 * 12 10 8 15 15 H 1.48497 * 109.47219 * 240.00071 * 12 10 8 16 16 C 1.46498 * 119.99985 * 175.23228 * 6 4 3 17 17 C 1.53000 * 109.47110 * 94.40128 * 16 6 4 18 18 F 1.39908 * 109.47060 * 59.99654 * 17 16 6 19 19 F 1.39900 * 109.47382 * 179.97438 * 17 16 6 20 20 F 1.39899 * 109.47096 * 299.99927 * 17 16 6 21 21 S 1.76550 * 120.77059 * 181.07469 * 3 2 1 22 22 C 1.82081 * 101.57345 * 346.20338 * 21 3 2 23 23 C 1.53757 * 107.24845 * 43.70095 * 22 21 3 24 24 O 1.33557 * 116.98794 * 180.28001 * 2 1 3 25 25 H 1.08996 * 109.47158 * 84.87426 * 1 2 3 26 26 H 1.09003 * 109.46940 * 204.87480 * 1 2 3 27 27 H 1.09002 * 109.47374 * 324.87412 * 1 2 3 28 28 H 1.09002 * 109.47464 * 209.99609 * 7 6 4 29 29 H 1.09005 * 109.47144 * 330.00014 * 7 6 4 30 30 H 0.97012 * 119.99245 * 179.97438 * 11 10 8 31 31 H 1.09008 * 109.47004 * 214.39715 * 16 6 4 32 32 H 1.08992 * 109.47300 * 334.40091 * 16 6 4 33 33 H 1.09002 * 109.90034 * 163.13844 * 22 21 3 34 34 H 1.08998 * 109.89613 * 284.26327 * 22 21 3 35 35 H 1.08996 * 109.54464 * 54.56285 * 23 22 21 36 36 H 1.08997 * 109.54233 * 174.82839 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1136 1.1906 0.0000 4 6 1.3077 2.4136 0.0301 5 8 0.9643 2.9420 -1.0114 6 7 0.9418 2.9508 1.2108 7 6 1.2599 2.2569 2.4612 8 6 2.6079 2.7111 2.9588 9 1 3.1715 3.4431 2.3995 10 6 3.1222 2.1914 4.1278 11 7 2.4365 1.2989 4.8082 12 14 4.7934 2.7539 4.7443 13 1 5.3561 3.7562 3.8042 14 1 4.6445 3.3661 6.0891 15 1 5.7078 1.5870 4.8302 16 6 0.2261 4.2286 1.2438 17 6 -1.2807 3.9680 1.2959 18 9 -1.5871 3.2319 2.4456 19 9 -1.9642 5.1882 1.3280 20 9 -1.6685 3.2455 0.1625 21 16 3.8750 1.3069 -0.0285 22 6 4.3605 -0.4011 0.3744 23 6 3.4583 -1.3372 -0.4466 24 8 2.1131 -1.1901 -0.0058 25 1 -0.3633 0.0918 -1.0235 26 1 -0.3633 -0.9324 0.4323 27 1 -0.3634 0.8405 0.5913 28 1 0.5003 2.4874 3.2081 29 1 1.2814 1.1814 2.2846 30 1 2.7986 0.9329 5.6305 31 1 0.5282 4.7915 2.1270 32 1 0.4648 4.8020 0.3482 33 1 5.4046 -0.5630 0.1065 34 1 4.2166 -0.5864 1.4388 35 1 3.5265 -1.0757 -1.5026 36 1 3.7780 -2.3694 -0.3038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813401313.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:40 Heat of formation + Delta-G solvation = -220.944000 kcal Electronic energy + Delta-G solvation = -27431.161513 eV Core-core repulsion = 23012.978781 eV Total energy + Delta-G solvation = -4418.182732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.075 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.08375 -48.60395 -48.56487 -41.42796 -40.39384 -36.96657 -34.76982 -34.57328 -32.40860 -31.02625 -29.18342 -28.44624 -25.62400 -24.96727 -24.48177 -22.15318 -20.36301 -19.56965 -19.53860 -19.09859 -18.63166 -18.46539 -17.98600 -17.49957 -16.88529 -16.60794 -16.19663 -15.68139 -15.51798 -15.46076 -15.17103 -15.01772 -14.75274 -14.72492 -14.72367 -14.46954 -14.29999 -14.11761 -13.58495 -13.43157 -13.37139 -13.30388 -13.14065 -12.96964 -12.82021 -12.62773 -12.28392 -12.03787 -11.70143 -11.20859 -11.10466 -10.56445 -10.33109 -9.81415 -8.22545 -8.15007 -6.23555 0.29581 0.67983 1.33691 1.40399 1.45143 1.54756 1.56521 1.86437 1.93783 2.17909 2.45545 2.84491 3.04301 3.18203 3.29062 3.47478 3.67815 3.99402 4.08395 4.13093 4.26163 4.30933 4.36234 4.49794 4.56547 4.62102 4.70589 4.72723 5.01324 5.20246 5.50554 5.77503 6.08036 6.22046 6.38510 6.81242 7.01860 7.44216 8.92667 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.010311 B = 0.007421 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.904229 B = 3772.367774 C = 5462.858360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.134 3.866 3 C -0.279 4.279 4 C 0.601 3.399 5 O -0.564 6.564 6 N -0.589 5.589 7 C 0.254 3.746 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.027 3.973 11 N -0.922 5.922 12 Si 0.946 3.054 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.280 1.280 16 C 0.075 3.925 17 C 0.439 3.561 18 F -0.186 7.186 19 F -0.178 7.178 20 F -0.186 7.186 21 S -0.124 6.124 22 C -0.139 4.139 23 C 0.058 3.942 24 O -0.311 6.311 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 -3.517 -7.945 8.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.075 3.925 3 C -0.394 4.394 4 C 0.389 3.611 5 O -0.445 6.445 6 N -0.319 5.319 7 C 0.135 3.865 8 C -0.557 4.557 9 H 0.074 0.926 10 C -0.173 4.173 11 N -0.562 5.562 12 Si 0.772 3.228 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.206 1.206 16 C -0.051 4.051 17 C 0.383 3.617 18 F -0.168 7.168 19 F -0.159 7.159 20 F -0.167 7.167 21 S 0.116 5.884 22 C -0.288 4.288 23 C -0.017 4.017 24 O -0.223 6.223 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.176 0.824 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.064 -2.572 -8.465 8.847 hybrid contribution -0.065 -0.502 1.106 1.216 sum -0.002 -3.074 -7.359 7.975 Atomic orbital electron populations 1.20991 0.87075 1.04411 1.04170 1.20511 0.94792 0.83313 0.93847 1.22182 0.98236 0.95608 1.23405 1.17381 0.77548 0.83294 0.82857 1.90736 1.57153 1.63512 1.33080 1.48061 1.54427 1.21205 1.08225 1.19238 0.96033 0.92220 0.79043 1.21485 1.02933 1.24258 1.07040 0.92557 1.25452 1.00229 0.94958 0.96612 1.70035 1.39352 1.29974 1.16857 0.85682 0.80711 0.78367 0.78032 1.19373 1.20859 1.20599 1.22657 0.84417 0.88723 1.09291 1.21347 0.92978 0.74121 0.73247 1.93192 1.94593 1.78057 1.50911 1.93165 1.82418 1.44123 1.96215 1.93176 1.92832 1.78721 1.52007 1.85459 0.97399 1.18049 1.87514 1.24552 1.06239 0.93503 1.04478 1.23523 0.77307 1.02924 0.97982 1.85067 1.30272 1.27208 1.79750 0.88413 0.88147 0.91870 0.95064 0.95641 0.92676 0.84337 0.85290 0.82416 0.89563 0.89294 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.46 9.38 71.24 0.67 -2.79 16 2 C 0.13 4.76 5.92 24.64 0.15 4.91 16 3 C -0.28 -11.07 4.39 23.38 0.10 -10.96 16 4 C 0.60 25.39 4.88 86.40 0.42 25.82 16 5 O -0.56 -25.23 16.26 -4.44 -0.07 -25.30 16 6 N -0.59 -24.30 2.11 -831.06 -1.75 -26.05 16 7 C 0.25 11.93 4.53 85.63 0.39 12.32 16 8 C -0.52 -26.03 9.38 25.60 0.24 -25.79 16 9 H 0.06 2.90 7.81 -2.91 -0.02 2.87 16 10 C 0.03 1.40 5.46 84.66 0.46 1.86 16 11 N -0.92 -50.04 13.29 21.45 0.28 -49.75 16 12 Si 0.95 41.37 29.54 68.60 2.03 43.40 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 16 C 0.08 2.59 5.45 86.38 0.47 3.06 16 17 C 0.44 14.71 3.29 71.98 0.24 14.94 16 18 F -0.19 -6.77 15.82 44.97 0.71 -6.06 16 19 F -0.18 -5.35 17.32 44.97 0.78 -4.57 16 20 F -0.19 -6.64 16.57 44.97 0.75 -5.90 16 21 S -0.12 -4.54 22.32 -56.49 -1.26 -5.80 16 22 C -0.14 -3.70 6.78 72.24 0.49 -3.21 16 23 C 0.06 1.28 6.92 72.24 0.50 1.78 16 24 O -0.31 -9.42 9.88 -68.77 -0.68 -10.10 16 25 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 26 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 2.29 6.40 -2.39 -0.02 2.27 16 28 H 0.03 1.55 6.86 -2.39 -0.02 1.54 16 29 H 0.03 1.29 6.31 -2.38 -0.02 1.28 16 30 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 31 H 0.14 4.37 8.11 -2.38 -0.02 4.35 16 32 H 0.13 4.17 7.36 -2.39 -0.02 4.16 16 33 H 0.16 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.09 1.77 8.13 -2.39 -0.02 1.75 16 36 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -63.58 330.81 6.03 -57.54 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.13 Total: 10.66 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 4.13 Total: 21.94 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.47 Total: -75.81 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.75 Total: -35.40 kcal Atomic # 9 Polarization: -18.76 SS G_CDS: 2.24 Total: -16.53 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -1.26 Total: -5.80 kcal Total: -63.58 6.03 -57.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813401313.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.400 kcal (2) G-P(sol) polarization free energy of solvation -63.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds