Wall clock time and date at job start Tue Mar 31 2020 13:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47017 * 55.00082 * 11 10 9 13 13 N 1.46904 * 109.47449 * 295.00426 * 11 10 9 14 14 C 1.50698 * 109.47721 * 175.00208 * 11 10 9 15 15 N 1.30975 * 126.43795 * 255.00703 * 14 11 10 16 16 C 1.35223 * 105.58081 * 179.97438 * 15 14 11 17 17 C 1.48371 * 126.41810 * 180.02562 * 16 15 14 18 18 C 1.39362 * 120.12883 * 180.02562 * 17 16 15 19 19 C 1.37979 * 119.92645 * 180.02562 * 18 17 16 20 20 C 1.38359 * 120.18938 * 0.02562 * 19 18 17 21 21 C 1.38334 * 120.26230 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 119.96327 * 179.97438 * 21 20 19 23 23 C 1.38418 * 120.06502 * 359.72112 * 21 20 19 24 24 F 1.35105 * 120.09320 * 180.28066 * 23 21 20 25 25 N 1.30789 * 107.16750 * 359.97438 * 16 15 14 26 26 O 1.21292 * 110.09260 * 359.74212 * 25 16 15 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 29 29 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 32 32 H 1.00898 * 110.99372 * 300.00401 * 13 11 10 33 33 H 1.00904 * 110.99944 * 63.94834 * 13 11 10 34 34 H 1.07999 * 120.03855 * 0.03012 * 18 17 16 35 35 H 1.07998 * 119.90272 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.87137 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7880 -5.0073 -0.8405 13 7 0.7290 -5.1182 1.2567 14 6 2.4549 -6.1299 -0.1226 15 7 2.6739 -6.8531 -1.1924 16 6 3.6212 -7.7501 -0.8367 17 6 4.2127 -8.7976 -1.7052 18 6 5.1861 -9.6576 -1.2000 19 6 5.7337 -10.6300 -2.0115 20 6 5.3197 -10.7535 -3.3259 21 6 4.3548 -9.9033 -3.8357 22 17 3.8416 -10.0648 -5.4862 23 6 3.7945 -8.9275 -3.0297 24 9 2.8481 -8.1006 -3.5254 25 7 3.9193 -7.5207 0.4159 26 8 3.2629 -6.5917 0.8370 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8902 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8905 32 1 1.3491 -5.1021 2.0525 33 1 0.0242 -4.4001 1.3329 34 1 5.5113 -9.5632 -0.1745 35 1 6.4876 -11.2965 -1.6195 36 1 5.7515 -11.5167 -3.9564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823001813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:36 Heat of formation + Delta-G solvation = 14.363430 kcal Electronic energy + Delta-G solvation = -23913.092102 eV Core-core repulsion = 19953.758546 eV Total energy + Delta-G solvation = -3959.333557 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.09726 -46.72485 -40.30575 -38.33365 -37.79341 -36.90959 -35.14540 -33.70510 -31.92740 -31.66475 -31.56425 -28.28853 -26.15316 -26.06231 -24.45624 -23.53619 -22.73755 -21.57045 -19.35461 -19.24174 -18.69697 -18.39232 -17.73960 -17.49004 -17.17141 -16.95532 -16.47526 -15.96099 -15.68394 -15.51774 -15.13137 -14.85705 -14.47173 -14.25148 -14.20417 -14.02641 -13.47960 -13.44285 -13.32774 -12.98170 -12.77287 -12.71451 -12.55090 -12.49250 -12.24768 -12.12063 -11.83862 -11.66480 -11.42996 -11.26439 -10.55184 -10.01179 -9.90448 -9.84168 -8.21276 -6.31158 -0.71091 -0.22687 0.09498 0.81125 1.15917 1.40855 1.42095 1.49931 1.57369 2.15969 2.31141 2.40369 2.57938 2.89210 3.12943 3.43906 3.61860 3.69603 3.75467 3.96189 4.03411 4.12493 4.25834 4.33672 4.57018 4.69427 4.71438 4.76678 4.83148 4.96199 5.03344 5.07912 5.46113 5.46543 5.64568 5.79901 5.92573 6.20526 6.40247 6.83495 6.87930 7.37783 8.89401 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.002546 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.172382 B =10995.928640 C =11674.222323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.127 4.127 11 C 0.193 3.807 12 H 0.120 0.880 13 N -0.831 5.831 14 C 0.222 3.778 15 N -0.493 5.493 16 C 0.199 3.801 17 C -0.070 4.070 18 C -0.051 4.051 19 C -0.098 4.098 20 C -0.049 4.049 21 C -0.088 4.088 22 Cl -0.045 7.045 23 C 0.123 3.877 24 F -0.124 7.124 25 N -0.379 5.379 26 O 0.084 5.916 27 H 0.264 0.736 28 H -0.001 1.001 29 H 0.017 0.983 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.353 0.647 33 H 0.368 0.632 34 H 0.157 0.843 35 H 0.194 0.806 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.968 -24.888 -3.890 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.167 4.167 11 C 0.079 3.921 12 H 0.138 0.862 13 N -0.366 5.366 14 C 0.001 3.999 15 N -0.226 5.226 16 C -0.071 4.071 17 C -0.073 4.073 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.068 4.068 21 C -0.116 4.116 22 Cl -0.016 7.016 23 C 0.101 3.899 24 F -0.103 7.103 25 N -0.086 5.086 26 O 0.025 5.975 27 H 0.073 0.927 28 H 0.017 0.983 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.174 0.826 35 H 0.211 0.789 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 12.001 -26.030 -4.288 28.983 hybrid contribution -0.091 2.636 -0.113 2.640 sum 11.910 -23.394 -4.401 26.618 Atomic orbital electron populations 1.70037 1.07405 1.27878 1.51166 1.25825 0.95722 1.02860 0.94736 0.85624 0.78411 0.78778 0.78989 1.19753 1.20806 1.19218 1.21570 0.93394 0.92400 1.51102 0.92683 1.18957 0.93910 0.91486 0.96275 1.22287 0.99259 0.93137 1.02026 1.19979 0.90346 0.84732 0.97074 0.86187 1.58962 1.18405 1.56657 1.02549 1.28985 0.92742 0.96395 0.81775 1.72145 1.16399 1.07353 1.26700 1.23979 0.95235 0.97747 0.90146 1.17535 1.02090 0.97343 0.90311 1.21499 0.91666 0.91993 1.01886 1.21616 1.00292 0.97705 0.91926 1.21667 0.92075 0.96490 0.96589 1.21082 1.02597 1.00067 0.87872 1.98404 1.90275 1.97124 1.15752 1.17645 0.89954 0.90964 0.91337 1.91593 1.61383 1.69959 1.87328 1.74783 1.16441 1.04900 1.12523 1.85224 1.39075 1.34381 1.38798 0.92672 0.98299 0.96429 0.92925 0.91359 0.83307 0.81497 0.82570 0.78879 0.79731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 43.16 29.54 68.60 2.03 45.18 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -29.65 9.11 25.60 0.23 -29.41 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.48 4.74 29.85 0.14 1.62 16 10 C -0.13 -4.82 4.78 30.59 0.15 -4.67 16 11 C 0.19 6.31 3.35 44.17 0.15 6.46 16 12 H 0.12 4.07 8.14 -2.38 -0.02 4.05 16 13 N -0.83 -23.98 9.17 -171.79 -1.58 -25.56 16 14 C 0.22 7.38 7.30 88.36 0.64 8.03 16 15 N -0.49 -17.47 10.25 -302.47 -3.10 -20.57 16 16 C 0.20 6.30 7.79 137.27 1.07 7.37 16 17 C -0.07 -1.76 5.88 -20.00 -0.12 -1.88 16 18 C -0.05 -0.82 9.69 22.48 0.22 -0.60 16 19 C -0.10 -0.83 10.03 22.24 0.22 -0.61 16 20 C -0.05 -0.50 9.82 22.32 0.22 -0.29 16 21 C -0.09 -1.65 6.32 22.34 0.14 -1.51 16 22 Cl -0.04 -0.84 28.61 -2.72 -0.08 -0.91 16 23 C 0.12 3.17 7.25 22.62 0.16 3.33 16 24 F -0.12 -3.99 15.37 44.97 0.69 -3.30 16 25 N -0.38 -11.72 11.86 -59.09 -0.70 -12.42 16 26 O 0.08 2.66 11.28 74.59 0.84 3.50 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.02 0.84 6.87 -2.39 -0.02 0.82 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.35 9.18 8.97 -89.70 -0.80 8.37 16 33 H 0.37 10.79 7.55 -89.69 -0.68 10.12 16 34 H 0.16 2.20 7.87 -2.91 -0.02 2.17 16 35 H 0.19 -0.04 8.06 -2.91 -0.02 -0.06 16 36 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -67.39 338.20 1.76 -65.63 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -0.32 Total: 13.17 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 3.69 Total: -11.30 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -5.09 Total: -111.97 kcal Atomic # 8 Polarization: 2.66 SS G_CDS: 0.84 Total: 3.50 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.69 Total: -3.30 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.91 kcal Total: -67.39 1.76 -65.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823001813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.989 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds