Wall clock time and date at job start Tue Mar 31 2020 14:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47481 * 2 1 4 4 C 1.36934 * 120.00228 * 275.97754 * 3 2 1 5 5 H 1.08002 * 120.00001 * 146.59169 * 4 3 2 6 6 C 1.38814 * 120.00099 * 326.59837 * 4 3 2 7 7 N 1.31620 * 119.99749 * 336.10299 * 6 4 3 8 8 Si 1.86799 * 120.00379 * 156.10214 * 6 4 3 9 9 H 1.48500 * 109.47005 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47127 * 119.99896 * 8 6 4 11 11 H 1.48499 * 109.47376 * 239.99624 * 8 6 4 12 12 S 1.65601 * 120.00073 * 95.97303 * 3 2 1 13 13 O 1.42098 * 106.40087 * 23.54491 * 12 3 2 14 14 O 1.42100 * 106.40272 * 156.46126 * 12 3 2 15 15 C 1.76203 * 107.21998 * 270.00617 * 12 3 2 16 16 C 1.38407 * 119.82239 * 269.72179 * 15 12 3 17 17 C 1.37886 * 120.16901 * 179.75961 * 16 15 12 18 18 C 1.39858 * 119.82395 * 0.51834 * 17 16 15 19 19 C 1.47171 * 120.16811 * 179.71895 * 18 17 16 20 20 C 1.34916 * 120.00319 * 0.02562 * 19 18 17 21 21 C 1.46233 * 120.00025 * 180.02562 * 20 19 18 22 22 O 1.21619 * 120.00375 * 359.97438 * 21 20 19 23 23 O 1.34907 * 119.99996 * 179.97438 * 21 20 19 24 24 C 1.39849 * 119.65564 * 359.73552 * 18 17 16 25 25 C 1.37879 * 119.82860 * 0.02562 * 24 18 17 26 26 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46831 * 299.99555 * 1 2 3 28 28 H 1.09000 * 109.47234 * 59.99723 * 1 2 3 29 29 H 1.09006 * 109.46890 * 239.99835 * 2 1 3 30 30 H 1.09000 * 109.47234 * 120.00277 * 2 1 3 31 31 H 0.97003 * 120.00371 * 180.02562 * 7 6 4 32 32 H 1.07997 * 119.91412 * 0.02562 * 16 15 12 33 33 H 1.08001 * 120.08802 * 180.27380 * 17 16 15 34 34 H 1.08001 * 120.00013 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.99667 * 359.97438 * 20 19 18 36 36 H 0.96700 * 114.00172 * 179.97438 * 23 21 20 37 37 H 1.08004 * 120.08638 * 180.02562 * 24 18 17 38 38 H 1.08004 * 119.91640 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1302 2.0679 -1.1794 5 1 1.9552 3.1334 -1.2026 6 6 2.4684 1.3945 -2.3453 7 7 3.1244 0.2553 -2.2805 8 14 1.9926 2.1052 -4.0060 9 1 1.2672 3.3856 -3.8069 10 1 3.2176 2.3505 -4.8088 11 1 1.1154 1.1449 -4.7224 12 16 2.4351 2.1120 1.4263 13 8 2.7472 1.0666 2.3367 14 8 3.3461 3.1507 1.0938 15 6 0.9882 2.9002 2.0509 16 6 0.7137 4.2112 1.7023 17 6 -0.4191 4.8333 2.1829 18 6 -1.2860 4.1395 3.0334 19 6 -2.4940 4.7982 3.5557 20 6 -2.7678 6.0744 3.2140 21 6 -3.9678 6.7290 3.7335 22 8 -4.7193 6.1229 4.4732 23 8 -4.2413 8.0052 3.3923 24 6 -0.9987 2.8168 3.3850 25 6 0.1355 2.2070 2.8922 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.3611 -0.2151 -3.0952 32 1 1.3862 4.7469 1.0488 33 1 -0.6343 5.8550 1.9066 34 1 -3.1613 4.2600 4.2126 35 1 -2.1002 6.6127 2.5575 36 1 -5.0550 8.3513 3.7838 37 1 -1.6636 2.2744 4.0409 38 1 0.3589 1.1857 3.1632 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829618495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:57 Heat of formation + Delta-G solvation = -136.437981 kcal Electronic energy + Delta-G solvation = -25016.847545 eV Core-core repulsion = 21144.186009 eV Total energy + Delta-G solvation = -3872.661536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.22241 -40.28193 -38.04558 -37.68352 -37.18248 -36.59668 -35.39413 -33.54226 -32.21971 -31.15484 -30.90885 -26.49509 -26.37403 -24.03870 -23.46387 -23.15117 -20.58398 -20.31285 -19.52236 -19.19418 -18.46546 -18.12086 -17.91280 -16.70111 -16.60436 -16.53859 -16.35330 -15.88700 -15.50306 -15.22092 -14.67099 -14.51626 -14.43186 -14.28173 -14.11206 -13.71272 -13.63748 -13.14070 -13.06553 -12.93916 -12.82700 -12.65776 -12.64583 -12.57714 -12.14241 -12.09337 -11.94095 -11.86469 -11.77495 -11.67135 -11.46936 -10.91619 -10.09441 -9.73070 -9.56854 -8.16044 -5.90433 -0.97621 -0.25414 0.28623 0.49168 1.49130 1.52660 1.64485 1.85047 2.17443 2.33001 2.54964 2.75455 2.94031 3.21090 3.46825 3.59486 3.75562 3.86786 4.10374 4.23553 4.32851 4.36290 4.43360 4.60249 4.75278 4.75773 4.81314 4.95719 4.98091 4.99355 5.13076 5.20139 5.31240 5.39933 5.48599 5.51578 5.64538 5.75377 5.97448 6.52573 6.88719 7.10375 7.46849 8.85656 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.003480 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.022656 B = 8043.907023 C = 8796.863413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 N -0.852 5.852 4 C -0.305 4.305 5 H 0.092 0.908 6 C -0.004 4.004 7 N -0.891 5.891 8 Si 0.975 3.025 9 H -0.257 1.257 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.635 3.365 13 O -1.018 7.018 14 O -1.008 7.008 15 C -0.649 4.649 16 C -0.038 4.038 17 C -0.115 4.115 18 C -0.035 4.035 19 C -0.001 4.001 20 C -0.190 4.190 21 C 0.517 3.483 22 O -0.552 6.552 23 O -0.499 6.499 24 C -0.107 4.107 25 C -0.039 4.039 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.269 0.731 32 H 0.137 0.863 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.428 0.572 37 H 0.170 0.830 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.982 9.247 8.343 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.684 5.684 4 C -0.439 4.439 5 H 0.110 0.890 6 C -0.208 4.208 7 N -0.532 5.532 8 Si 0.799 3.201 9 H -0.181 1.181 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.737 3.263 13 O -1.008 7.008 14 O -0.998 6.998 15 C -0.738 4.738 16 C -0.058 4.058 17 C -0.134 4.134 18 C -0.035 4.035 19 C -0.020 4.020 20 C -0.209 4.209 21 C 0.364 3.636 22 O -0.445 6.445 23 O -0.311 6.311 24 C -0.126 4.126 25 C -0.058 4.058 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.185 0.815 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.288 0.712 37 H 0.188 0.812 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.890 8.849 8.755 18.652 hybrid contribution -0.684 0.406 -0.615 1.005 sum -14.574 9.256 8.140 19.087 Atomic orbital electron populations 1.22085 0.95677 1.01843 1.01574 1.21423 0.94191 0.83218 1.03542 1.52680 1.77082 1.21184 1.17474 1.19330 1.45626 0.94212 0.84779 0.89035 1.26097 0.94852 0.97203 1.02656 1.70082 1.35149 1.18258 1.29691 0.85166 0.78002 0.78994 0.77978 1.18088 1.21217 1.19994 1.03960 0.74882 0.73361 0.74078 1.93380 1.84001 1.56849 1.66542 1.93391 1.62162 1.60119 1.84155 1.30937 1.22908 1.07068 1.12930 1.21011 0.96830 0.92136 0.95777 1.21818 0.93158 1.01561 0.96828 1.19329 0.94069 0.94146 0.96004 1.22500 0.92545 0.93633 0.93285 1.22418 0.97011 0.96176 1.05247 1.21012 0.85349 0.80299 0.76939 1.90944 1.50817 1.66137 1.36642 1.85029 1.48801 1.27450 1.69808 1.21773 0.96771 0.94178 0.99829 1.21031 0.92606 0.99928 0.92266 0.90795 0.92864 0.93125 0.88881 0.92499 0.92181 0.84541 0.81515 0.83111 0.82086 0.71151 0.81225 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 10.20 71.98 0.73 -4.66 16 2 C 0.10 4.58 6.01 86.38 0.52 5.10 16 3 N -0.85 -41.09 2.85 -343.45 -0.98 -42.07 16 4 C -0.30 -15.58 8.87 84.03 0.75 -14.83 16 5 H 0.09 4.54 7.94 -2.91 -0.02 4.51 16 6 C 0.00 -0.21 4.98 84.86 0.42 0.22 16 7 N -0.89 -47.93 11.27 21.65 0.24 -47.69 16 8 Si 0.97 40.07 29.62 68.60 2.03 42.10 16 9 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 10 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 12 S 2.64 120.65 5.65 -56.49 -0.32 120.33 16 13 O -1.02 -49.23 15.81 -128.00 -2.02 -51.25 16 14 O -1.01 -52.21 16.47 -128.00 -2.11 -54.32 16 15 C -0.65 -22.95 5.98 22.35 0.13 -22.82 16 16 C -0.04 -1.19 9.50 22.23 0.21 -0.98 16 17 C -0.12 -2.63 9.41 22.58 0.21 -2.41 16 18 C -0.04 -0.72 5.87 -20.15 -0.12 -0.84 16 19 C 0.00 -0.02 9.46 23.85 0.23 0.21 16 20 C -0.19 -2.82 9.54 23.58 0.22 -2.60 16 21 C 0.52 8.54 8.23 69.90 0.58 9.12 16 22 O -0.55 -12.40 16.96 19.45 0.33 -12.07 16 23 O -0.50 -5.77 13.56 -58.22 -0.79 -6.56 16 24 C -0.11 -2.33 9.80 22.57 0.22 -2.11 16 25 C -0.04 -1.14 8.50 22.22 0.19 -0.95 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 27 H 0.05 1.68 7.11 -2.39 -0.02 1.66 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 4.62 5.31 -2.38 -0.01 4.61 16 30 H 0.06 2.49 6.90 -2.39 -0.02 2.47 16 31 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 32 H 0.14 4.35 7.59 -2.91 -0.02 4.33 16 33 H 0.17 2.58 6.17 -2.91 -0.02 2.56 16 34 H 0.15 2.18 7.52 -2.91 -0.02 2.16 16 35 H 0.16 1.83 6.08 -2.91 -0.02 1.81 16 36 H 0.43 1.36 8.98 -74.06 -0.66 0.70 16 37 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.14 4.04 7.60 -2.91 -0.02 4.02 16 Total: -1.00 -72.87 343.71 1.13 -71.74 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.45 Total: 17.36 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 4.30 Total: -37.57 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -0.73 Total: -89.76 kcal Atomic # 8 Polarization: -119.61 SS G_CDS: -4.59 Total: -124.20 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Atomic # 16 Polarization: 120.65 SS G_CDS: -0.32 Total: 120.33 kcal Total: -72.87 1.13 -71.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829618495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.699 kcal (2) G-P(sol) polarization free energy of solvation -72.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds