Wall clock time and date at job start Tue Mar 31 2020 13:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48501 * 109.47211 * 85.97868 * 3 2 1 5 5 H 1.48504 * 109.46805 * 205.97433 * 3 2 1 6 6 H 1.48503 * 109.47190 * 325.97661 * 3 2 1 7 7 C 1.37871 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99962 * 3.09060 * 7 2 1 9 9 C 1.50707 * 120.00555 * 183.08995 * 7 2 1 10 10 C 1.52996 * 115.54839 * 271.65206 * 9 7 2 11 11 S 1.81404 * 109.46855 * 294.02155 * 10 9 7 12 12 O 1.42097 * 110.54216 * 295.50055 * 11 10 9 13 13 O 1.42098 * 110.54362 * 72.25700 * 11 10 9 14 14 O 1.52201 * 104.44763 * 183.88002 * 11 10 9 15 15 C 1.35713 * 113.99998 * 75.00157 * 14 11 10 16 16 C 1.38997 * 119.90976 * 269.72203 * 15 14 11 17 17 C 1.37703 * 120.08653 * 179.72252 * 16 15 14 18 18 C 1.39735 * 119.91018 * 0.57666 * 17 16 15 19 19 C 1.47598 * 120.08793 * 179.67931 * 18 17 16 20 20 N 1.34781 * 119.99992 * 0.02628 * 19 18 17 21 21 O 1.21585 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.39732 * 119.82444 * 359.69769 * 18 17 16 23 23 C 1.37701 * 119.91034 * 0.02562 * 22 18 17 24 24 C 1.52999 * 117.49978 * 125.97471 * 9 7 2 25 25 C 1.53001 * 117.49383 * 57.31392 * 9 7 2 26 26 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47412 * 54.02403 * 10 9 7 28 28 H 1.09002 * 109.47057 * 174.02812 * 10 9 7 29 29 H 1.08000 * 119.95521 * 0.02562 * 16 15 14 30 30 H 1.08001 * 120.04671 * 180.27862 * 17 16 15 31 31 H 0.96999 * 119.99876 * 359.97438 * 20 19 18 32 32 H 0.96999 * 120.00006 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.04613 * 179.97438 * 22 18 17 34 34 H 1.08006 * 119.95484 * 179.97438 * 23 22 18 35 35 H 1.08998 * 117.49578 * 0.02562 * 24 9 7 36 36 H 1.08997 * 117.49626 * 145.02300 * 24 9 7 37 37 H 1.08997 * 117.49931 * 214.97985 * 25 9 7 38 38 H 1.08999 * 117.49984 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4115 2.0956 1.3966 5 1 3.5866 1.4171 -0.6132 6 1 1.4916 2.6267 -0.7834 7 6 2.0045 -1.1940 -0.0005 8 1 1.4657 -2.1286 -0.0514 9 6 3.5100 -1.1950 0.0698 10 6 4.2335 -1.1178 -1.2761 11 16 3.9089 -2.6298 -2.2245 12 8 4.4637 -3.7602 -1.5660 13 8 2.5697 -2.6427 -2.6994 14 8 4.7519 -2.4772 -3.4825 15 6 6.0794 -2.6783 -3.2852 16 6 6.9008 -1.6075 -2.9525 17 6 8.2473 -1.8085 -2.7458 18 6 8.7898 -3.0889 -2.8829 19 6 10.2338 -3.3075 -2.6693 20 7 11.0309 -2.2714 -2.3410 21 8 10.7042 -4.4222 -2.7894 22 6 7.9617 -4.1617 -3.2231 23 6 6.6152 -3.9535 -3.4225 24 6 4.1649 -2.0225 1.1776 25 6 4.1618 -0.4941 1.2635 26 1 -0.4850 0.8400 -0.0004 27 1 3.8718 -0.2542 -1.8341 28 1 5.3057 -1.0182 -1.1070 29 1 6.4815 -0.6174 -2.8511 30 1 8.8841 -0.9767 -2.4829 31 1 10.6557 -1.3821 -2.2455 32 1 11.9799 -2.4150 -2.2010 33 1 8.3773 -5.1528 -3.3304 34 1 5.9745 -4.7822 -3.6858 35 1 3.5069 -2.5664 1.8553 36 1 5.1114 -2.5116 0.9477 37 1 5.1063 0.0215 1.0901 38 1 3.5018 -0.0319 1.9976 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829736377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:01 Heat of formation + Delta-G solvation = -82.641767 kcal Electronic energy + Delta-G solvation = -25784.405859 eV Core-core repulsion = 21914.077102 eV Total energy + Delta-G solvation = -3870.328757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23380 -39.93507 -37.71002 -37.23564 -36.62033 -35.50500 -34.24607 -32.23468 -31.54905 -30.68259 -28.73797 -25.66316 -24.78722 -23.28091 -21.86734 -21.63464 -20.46988 -19.40471 -18.64814 -18.08418 -17.63782 -17.18319 -16.92450 -16.11545 -15.60031 -15.27359 -15.11481 -15.08599 -14.73614 -14.27920 -14.07871 -13.92639 -13.26629 -13.12929 -13.05993 -12.83609 -12.72717 -12.41719 -12.06162 -11.62775 -11.50084 -11.36108 -11.34175 -11.07758 -10.75091 -10.51357 -10.47098 -10.22257 -10.13770 -9.77278 -9.51154 -9.27500 -9.20323 -8.74083 -8.58604 -6.22681 -4.31509 0.01362 0.82062 0.88393 2.38568 2.49084 3.05765 3.16216 3.25756 3.27973 3.36345 4.08951 4.27172 4.28622 4.29678 4.41329 4.44712 4.68266 4.72003 4.88835 4.94465 5.00644 5.26635 5.41828 5.49155 5.58526 5.76311 5.80073 5.83967 5.91931 5.96993 6.05738 6.33400 6.33532 6.43269 6.55697 6.77487 6.87417 6.97402 7.50879 7.81793 8.30048 8.82601 9.37388 10.88642 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.004106 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.265718 B = 6817.483391 C = 7427.385162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.088 3.912 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.257 1.257 6 H -0.289 1.289 7 C -0.512 4.512 8 H 0.088 0.912 9 C 0.002 3.998 10 C -0.596 4.596 11 S 2.591 3.409 12 O -0.958 6.958 13 O -0.902 6.902 14 O -0.679 6.679 15 C 0.111 3.889 16 C -0.143 4.143 17 C -0.068 4.068 18 C -0.137 4.137 19 C 0.567 3.433 20 N -0.850 5.850 21 O -0.536 6.536 22 C -0.039 4.039 23 C -0.101 4.101 24 C -0.177 4.177 25 C -0.182 4.182 26 H 0.268 0.732 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.402 0.598 32 H 0.406 0.594 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.373 0.089 -5.524 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.117 4.117 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.181 1.181 6 H -0.216 1.216 7 C -0.548 4.548 8 H 0.106 0.894 9 C 0.000 4.000 10 C -0.725 4.725 11 S 2.689 3.311 12 O -0.956 6.956 13 O -0.900 6.900 14 O -0.637 6.637 15 C 0.069 3.931 16 C -0.163 4.163 17 C -0.087 4.087 18 C -0.141 4.141 19 C 0.353 3.647 20 N -0.415 5.415 21 O -0.413 6.413 22 C -0.058 4.058 23 C -0.121 4.121 24 C -0.214 4.214 25 C -0.221 4.221 26 H 0.078 0.922 27 H 0.151 0.849 28 H 0.127 0.873 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.232 0.768 32 H 0.238 0.762 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.928 -1.172 -6.065 20.864 hybrid contribution 0.475 2.215 0.405 2.301 sum 20.404 1.043 -5.661 21.200 Atomic orbital electron populations 1.69883 1.06404 1.27424 1.47786 1.24967 0.94564 0.99005 0.93141 0.86918 0.80745 0.83512 0.78714 1.20086 1.18082 1.21598 1.20353 0.85573 0.95585 1.53332 0.89365 1.18806 0.94955 1.02978 0.83275 1.30564 1.07711 1.21151 1.13107 1.05650 0.74519 0.77442 0.73491 1.93574 1.78233 1.48331 1.75474 1.93650 1.32482 1.86791 1.77054 1.85837 1.25200 1.90937 1.61676 1.18363 0.78971 0.94523 1.01253 1.21373 0.94040 0.99177 1.01673 1.21093 0.94298 0.96167 0.97132 1.20029 0.93615 0.94710 1.05731 1.18109 0.86249 0.84449 0.75862 1.43746 1.12575 1.11438 1.73702 1.90845 1.76101 1.23406 1.50999 1.21188 0.91531 0.99523 0.93542 1.21365 0.95901 0.95987 0.98865 1.23061 1.01498 0.93058 1.03786 1.22986 1.01069 0.95065 1.02973 0.92178 0.84908 0.87288 0.83266 0.84182 0.76833 0.76234 0.83079 0.83268 0.88464 0.89922 0.90625 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.20 13.96 55.43 0.77 -25.43 16 2 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.87 20.26 24.90 -169.99 -4.23 16.03 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.26 -5.34 5.72 56.52 0.32 -5.01 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.51 -13.92 8.72 -34.44 -0.30 -14.22 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 9 C 0.00 0.05 0.77 -155.66 -0.12 -0.07 16 10 C -0.60 -11.09 5.03 37.16 0.19 -10.90 16 11 S 2.59 50.88 4.94 -107.50 -0.53 50.35 16 12 O -0.96 -19.13 16.25 -67.04 -1.09 -20.22 16 13 O -0.90 -21.81 17.67 -67.04 -1.18 -23.00 16 14 O -0.68 -11.10 10.04 -51.17 -0.51 -11.62 16 15 C 0.11 1.53 4.80 -39.02 -0.19 1.34 16 16 C -0.14 -1.51 8.40 -39.50 -0.33 -1.84 16 17 C -0.07 -0.56 9.53 -39.22 -0.37 -0.93 16 18 C -0.14 -1.35 5.87 -104.96 -0.62 -1.97 16 19 C 0.57 5.54 8.04 -12.44 -0.10 5.44 16 20 N -0.85 -4.56 8.82 30.47 0.27 -4.29 16 21 O -0.54 -7.25 17.18 5.29 0.09 -7.16 16 22 C -0.04 -0.43 9.58 -39.22 -0.38 -0.80 16 23 C -0.10 -1.28 9.02 -39.50 -0.36 -1.63 16 24 C -0.18 -3.45 9.96 -26.69 -0.27 -3.72 16 25 C -0.18 -3.56 7.55 -26.69 -0.20 -3.76 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 27 H 0.13 2.41 6.77 -51.93 -0.35 2.06 16 28 H 0.11 1.56 6.29 -51.92 -0.33 1.23 16 29 H 0.15 1.28 7.43 -52.49 -0.39 0.89 16 30 H 0.14 0.55 6.39 -52.49 -0.34 0.21 16 31 H 0.40 1.03 6.85 -40.82 -0.28 0.75 16 32 H 0.41 1.65 8.93 -40.82 -0.36 1.29 16 33 H 0.15 1.50 7.64 -52.49 -0.40 1.10 16 34 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.92 7.23 -51.93 -0.38 1.55 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -36.49 332.82 -8.69 -45.19 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.15 Total: 5.83 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: -3.14 Total: -30.70 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 1.04 Total: -29.72 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -2.70 Total: -62.00 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.23 Total: 16.03 kcal Atomic # 16 Polarization: 50.88 SS G_CDS: -0.53 Total: 50.35 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.49 -8.69 -45.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829736377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.454 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds