Wall clock time and date at job start Tue Mar 31 2020 14:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37966 * 120.07753 * 2 1 4 4 C 1.38349 * 120.14460 * 180.22833 * 3 2 1 5 5 S 1.76202 * 119.84233 * 179.76568 * 4 3 2 6 6 O 1.42100 * 106.40188 * 156.18454 * 5 4 3 7 7 O 1.42105 * 106.40342 * 23.26617 * 5 4 3 8 8 N 1.65602 * 107.21994 * 269.72345 * 5 4 3 9 9 C 1.36937 * 119.99924 * 90.00000 * 8 5 4 10 10 H 1.08002 * 120.00058 * 307.93895 * 9 8 5 11 11 C 1.38813 * 119.99750 * 127.93463 * 9 8 5 12 12 N 1.31617 * 119.99487 * 156.96798 * 11 9 8 13 13 Si 1.86791 * 120.00206 * 336.96902 * 11 9 8 14 14 H 1.48504 * 109.47085 * 93.65583 * 13 11 9 15 15 H 1.48506 * 109.47155 * 213.65167 * 13 11 9 16 16 H 1.48501 * 109.47278 * 333.65286 * 13 11 9 17 17 C 1.46496 * 120.00006 * 269.73059 * 8 5 4 18 18 C 1.53006 * 117.49767 * 180.95696 * 17 8 5 19 19 C 1.52999 * 117.50101 * 112.29369 * 17 8 5 20 20 C 1.38383 * 120.30670 * 359.48964 * 4 3 2 21 21 C 1.37922 * 120.15206 * 0.25087 * 20 4 3 22 22 C 1.39611 * 120.07499 * 179.72105 * 2 1 3 23 23 C 1.47731 * 120.14945 * 359.97438 * 22 2 1 24 24 O 1.21475 * 119.99904 * 353.87448 * 23 22 2 25 25 O 1.34708 * 120.00048 * 173.86221 * 23 22 2 26 26 H 1.08998 * 109.47618 * 261.18587 * 1 2 3 27 27 H 1.08999 * 109.46949 * 21.18456 * 1 2 3 28 28 H 1.09007 * 109.47130 * 141.17639 * 1 2 3 29 29 H 1.07995 * 119.92823 * 359.97438 * 3 2 1 30 30 H 0.97005 * 120.00067 * 179.97438 * 12 11 9 31 31 H 1.09006 * 115.55088 * 326.62026 * 17 8 5 32 32 H 1.09001 * 117.49584 * 359.97438 * 18 17 8 33 33 H 1.09000 * 117.49618 * 145.02307 * 18 17 8 34 34 H 1.09001 * 117.49571 * 214.97352 * 19 17 8 35 35 H 1.09000 * 117.49986 * 359.97438 * 19 17 8 36 36 H 1.08007 * 119.92296 * 180.27618 * 20 4 3 37 37 H 1.07993 * 120.07718 * 179.97438 * 21 20 4 38 38 H 0.96695 * 116.99994 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1955 -0.0048 5 16 4.4569 2.7249 -0.0110 6 8 5.7405 2.4550 0.5356 7 8 3.5710 3.6963 0.5285 8 7 4.7015 3.1433 -1.5945 9 6 3.7733 3.9052 -2.2526 10 1 2.7344 3.6101 -2.2526 11 6 4.1677 5.0570 -2.9196 12 7 3.4292 5.5363 -3.8979 13 14 5.7464 5.9264 -2.4287 14 1 6.8631 5.4426 -3.2797 15 1 5.5827 7.3909 -2.6123 16 1 6.0485 5.6369 -1.0039 17 6 5.9138 2.7034 -2.2895 18 6 6.0921 3.1413 -3.7446 19 6 5.7500 1.6850 -3.4196 20 6 4.2817 0.0017 0.0011 21 6 3.6031 -1.1991 0.0065 22 6 2.2066 -1.2081 0.0059 23 6 1.4730 -2.4904 0.0127 24 8 0.2635 -2.4975 0.1255 25 8 2.1452 -3.6517 -0.1064 26 1 -0.3634 -0.1575 1.0155 27 1 -0.3633 0.9582 -0.3714 28 1 -0.3634 -0.8007 -0.6443 29 1 1.6585 2.1292 -0.0004 30 1 3.7045 6.3414 -4.3638 31 1 6.8094 2.6307 -1.6724 32 1 5.3073 3.7564 -4.1849 33 1 7.1051 3.3562 -4.0849 34 1 6.5381 0.9427 -3.5462 35 1 4.7404 1.3421 -3.6457 36 1 5.3617 0.0102 0.0018 37 1 4.1504 -2.1300 0.0106 38 1 1.6220 -4.4647 -0.0970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832900901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:18 Heat of formation + Delta-G solvation = -90.823497 kcal Electronic energy + Delta-G solvation = -26065.445968 eV Core-core repulsion = 22194.762424 eV Total energy + Delta-G solvation = -3870.683544 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70385 -38.74377 -37.54874 -36.39085 -36.29805 -34.89574 -33.03200 -32.74680 -31.58575 -31.46540 -27.27022 -24.91639 -24.67023 -22.33069 -21.85367 -21.31814 -20.81351 -18.61441 -18.31238 -17.60910 -17.36131 -16.97225 -16.39546 -15.94371 -15.55644 -15.11693 -14.60902 -14.32678 -13.91483 -13.83830 -13.60807 -13.41659 -13.16292 -13.08891 -12.73166 -12.34677 -12.16670 -11.95498 -11.71071 -11.52270 -11.30191 -11.29483 -11.18857 -11.05001 -10.80403 -10.69303 -10.59108 -10.23588 -10.09666 -9.98561 -9.46980 -9.36241 -8.78953 -8.72665 -7.89021 -6.55892 -4.24847 0.30419 1.24844 1.31522 2.28065 2.78755 3.17217 3.27540 3.37173 3.48790 3.96576 4.19349 4.50335 4.51231 4.60002 4.72778 4.85738 4.92318 5.18349 5.32330 5.36113 5.54373 5.65140 5.70867 5.74173 5.76077 5.78715 5.93237 6.01098 6.07872 6.14277 6.26059 6.27583 6.31433 6.43444 6.70372 6.77616 7.03642 7.27264 7.53584 7.67008 8.18124 8.99372 9.02514 10.50190 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.004417 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.626999 B = 6336.907481 C = 6479.798284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 C -0.031 4.031 4 C -0.612 4.612 5 S 2.621 3.379 6 O -0.995 6.995 7 O -0.955 6.955 8 N -0.832 5.832 9 C -0.296 4.296 10 H 0.100 0.900 11 C 0.089 3.911 12 N -0.846 5.846 13 Si 0.867 3.133 14 H -0.259 1.259 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.073 3.927 18 C -0.179 4.179 19 C -0.193 4.193 20 C -0.046 4.046 21 C -0.082 4.082 22 C -0.099 4.099 23 C 0.526 3.474 24 O -0.505 6.505 25 O -0.511 6.511 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.152 0.848 30 H 0.278 0.722 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 -13.386 3.117 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.041 4.041 3 C -0.049 4.049 4 C -0.694 4.694 5 S 2.721 3.279 6 O -0.984 6.984 7 O -0.945 6.945 8 N -0.661 5.661 9 C -0.434 4.434 10 H 0.117 0.883 11 C -0.124 4.124 12 N -0.481 5.481 13 Si 0.692 3.308 14 H -0.184 1.184 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.035 4.035 18 C -0.218 4.218 19 C -0.233 4.233 20 C -0.065 4.065 21 C -0.101 4.101 22 C -0.100 4.100 23 C 0.371 3.629 24 O -0.395 6.395 25 O -0.323 6.323 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.169 0.831 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.444 -12.549 3.934 13.158 hybrid contribution 0.086 -0.626 -0.106 0.641 sum 0.529 -13.175 3.828 13.730 Atomic orbital electron populations 1.21087 0.89444 1.03569 1.03558 1.20130 0.97080 0.91232 0.95697 1.20910 0.92286 0.98481 0.93266 1.31798 1.06275 1.22055 1.09294 1.05777 0.73424 0.73355 0.75372 1.93416 1.39934 1.85893 1.79171 1.93476 1.67152 1.56383 1.77500 1.52355 1.26983 1.62355 1.24423 1.18558 0.90834 1.04000 1.30034 0.88254 1.25631 0.97641 0.95053 0.94081 1.69881 1.38900 1.21745 1.17582 0.87003 0.83955 0.78919 0.80951 1.18409 1.21165 1.18909 1.21637 0.89644 1.02811 0.89425 1.23546 1.02704 0.98118 0.97411 1.23294 1.02432 0.92392 1.05151 1.20896 1.00638 0.90640 0.94342 1.21469 0.92597 0.99032 0.97035 1.19064 0.93837 0.89723 1.07367 1.20941 0.85373 0.84269 0.72338 1.90864 1.15167 1.87709 1.45716 1.84574 1.45375 1.17059 1.85310 0.90449 0.91216 0.89292 0.83067 0.91199 0.86235 0.85435 0.89780 0.89790 0.88492 0.83665 0.84005 0.72832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 8.63 36.00 0.31 -1.30 16 2 C -0.04 -0.62 5.91 -104.21 -0.62 -1.23 16 3 C -0.03 -0.52 9.13 -39.64 -0.36 -0.89 16 4 C -0.61 -11.04 5.98 -39.49 -0.24 -11.28 16 5 S 2.62 56.68 5.65 -107.50 -0.61 56.07 16 6 O -0.99 -22.10 16.12 -57.17 -0.92 -23.02 16 7 O -0.96 -23.32 16.47 -57.17 -0.94 -24.26 16 8 N -0.83 -18.58 2.47 -53.42 -0.13 -18.71 16 9 C -0.30 -7.37 8.63 -15.06 -0.13 -7.50 16 10 H 0.10 2.59 8.06 -52.49 -0.42 2.16 16 11 C 0.09 2.24 3.37 -17.43 -0.06 2.19 16 12 N -0.85 -22.09 13.97 55.49 0.78 -21.32 16 13 Si 0.87 20.16 25.35 -169.99 -4.31 15.85 16 14 H -0.26 -5.50 6.13 56.52 0.35 -5.16 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 17 C 0.07 1.44 4.90 -67.93 -0.33 1.11 16 18 C -0.18 -3.43 6.92 -26.69 -0.18 -3.61 16 19 C -0.19 -3.29 10.40 -26.69 -0.28 -3.57 16 20 C -0.05 -0.71 9.50 -39.64 -0.38 -1.09 16 21 C -0.08 -1.11 9.62 -39.17 -0.38 -1.48 16 22 C -0.10 -1.40 5.87 -104.98 -0.62 -2.01 16 23 C 0.53 6.56 8.20 34.61 0.28 6.84 16 24 O -0.50 -7.10 14.19 -19.25 -0.27 -7.37 16 25 O -0.51 -4.60 12.70 -40.51 -0.51 -5.11 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 28 H 0.09 1.21 6.05 -51.93 -0.31 0.89 16 29 H 0.15 2.58 7.58 -52.49 -0.40 2.18 16 30 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.12 2.22 7.52 -51.93 -0.39 1.83 16 32 H 0.13 2.80 5.17 -51.93 -0.27 2.53 16 33 H 0.08 1.43 7.99 -51.93 -0.41 1.01 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.15 2.03 7.60 -52.48 -0.40 1.63 16 37 H 0.14 1.49 7.63 -52.49 -0.40 1.09 16 38 H 0.41 1.71 9.11 45.56 0.42 2.12 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -30.79 331.79 -8.37 -39.15 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -3.47 Total: 7.55 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.97 Total: -23.83 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.64 Total: -40.03 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -2.65 Total: -59.77 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.31 Total: 15.85 kcal Atomic # 16 Polarization: 56.68 SS G_CDS: -0.61 Total: 56.07 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.79 -8.37 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832900901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.670 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds