Wall clock time and date at job start Tue Mar 31 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37966 * 120.07753 * 2 1 4 4 C 1.38349 * 120.14460 * 180.22833 * 3 2 1 5 5 S 1.76202 * 119.84233 * 179.76568 * 4 3 2 6 6 O 1.42100 * 106.40188 * 156.18454 * 5 4 3 7 7 O 1.42105 * 106.40342 * 23.26617 * 5 4 3 8 8 N 1.65602 * 107.21994 * 269.72345 * 5 4 3 9 9 C 1.36937 * 119.99924 * 90.00000 * 8 5 4 10 10 H 1.08002 * 120.00058 * 307.93895 * 9 8 5 11 11 C 1.38813 * 119.99750 * 127.93463 * 9 8 5 12 12 N 1.31617 * 119.99487 * 156.96798 * 11 9 8 13 13 Si 1.86791 * 120.00206 * 336.96902 * 11 9 8 14 14 H 1.48504 * 109.47085 * 93.65583 * 13 11 9 15 15 H 1.48506 * 109.47155 * 213.65167 * 13 11 9 16 16 H 1.48501 * 109.47278 * 333.65286 * 13 11 9 17 17 C 1.46496 * 120.00006 * 269.73059 * 8 5 4 18 18 C 1.53006 * 117.49767 * 180.95696 * 17 8 5 19 19 C 1.52999 * 117.50101 * 112.29369 * 17 8 5 20 20 C 1.38383 * 120.30670 * 359.48964 * 4 3 2 21 21 C 1.37922 * 120.15206 * 0.25087 * 20 4 3 22 22 C 1.39611 * 120.07499 * 179.72105 * 2 1 3 23 23 C 1.47731 * 120.14945 * 359.97438 * 22 2 1 24 24 O 1.21475 * 119.99904 * 353.87448 * 23 22 2 25 25 O 1.34708 * 120.00048 * 173.86221 * 23 22 2 26 26 H 1.08998 * 109.47618 * 261.18587 * 1 2 3 27 27 H 1.08999 * 109.46949 * 21.18456 * 1 2 3 28 28 H 1.09007 * 109.47130 * 141.17639 * 1 2 3 29 29 H 1.07995 * 119.92823 * 359.97438 * 3 2 1 30 30 H 0.97005 * 120.00067 * 179.97438 * 12 11 9 31 31 H 1.09006 * 115.55088 * 326.62026 * 17 8 5 32 32 H 1.09001 * 117.49584 * 359.97438 * 18 17 8 33 33 H 1.09000 * 117.49618 * 145.02307 * 18 17 8 34 34 H 1.09001 * 117.49571 * 214.97352 * 19 17 8 35 35 H 1.09000 * 117.49986 * 359.97438 * 19 17 8 36 36 H 1.08007 * 119.92296 * 180.27618 * 20 4 3 37 37 H 1.07993 * 120.07718 * 179.97438 * 21 20 4 38 38 H 0.96695 * 116.99994 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1955 -0.0048 5 16 4.4569 2.7249 -0.0110 6 8 5.7405 2.4550 0.5356 7 8 3.5710 3.6963 0.5285 8 7 4.7015 3.1433 -1.5945 9 6 3.7733 3.9052 -2.2526 10 1 2.7344 3.6101 -2.2526 11 6 4.1677 5.0570 -2.9196 12 7 3.4292 5.5363 -3.8979 13 14 5.7464 5.9264 -2.4287 14 1 6.8631 5.4426 -3.2797 15 1 5.5827 7.3909 -2.6123 16 1 6.0485 5.6369 -1.0039 17 6 5.9138 2.7034 -2.2895 18 6 6.0921 3.1413 -3.7446 19 6 5.7500 1.6850 -3.4196 20 6 4.2817 0.0017 0.0011 21 6 3.6031 -1.1991 0.0065 22 6 2.2066 -1.2081 0.0059 23 6 1.4730 -2.4904 0.0127 24 8 0.2635 -2.4975 0.1255 25 8 2.1452 -3.6517 -0.1064 26 1 -0.3634 -0.1575 1.0155 27 1 -0.3633 0.9582 -0.3714 28 1 -0.3634 -0.8007 -0.6443 29 1 1.6585 2.1292 -0.0004 30 1 3.7045 6.3414 -4.3638 31 1 6.8094 2.6307 -1.6724 32 1 5.3073 3.7564 -4.1849 33 1 7.1051 3.3562 -4.0849 34 1 6.5381 0.9427 -3.5462 35 1 4.7404 1.3421 -3.6457 36 1 5.3617 0.0102 0.0018 37 1 4.1504 -2.1300 0.0106 38 1 1.6220 -4.4647 -0.0970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832900901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:17 Heat of formation + Delta-G solvation = -112.666034 kcal Electronic energy + Delta-G solvation = -26066.393131 eV Core-core repulsion = 22194.762424 eV Total energy + Delta-G solvation = -3871.630707 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71201 -39.85431 -39.14257 -38.12511 -37.24367 -36.72780 -34.78562 -33.91735 -33.26801 -32.77762 -28.40170 -26.70209 -25.91974 -23.44112 -23.29439 -22.67540 -22.21017 -20.37366 -19.27703 -19.16283 -18.65675 -18.45205 -17.99836 -17.07232 -16.89797 -16.69410 -15.98434 -15.64150 -15.51359 -15.14755 -15.05137 -14.77532 -14.69306 -14.34838 -13.94722 -13.70713 -13.44925 -13.36167 -13.30450 -13.04882 -12.95336 -12.91300 -12.57100 -12.49739 -12.37519 -12.20358 -12.10890 -11.99353 -11.70493 -11.28894 -10.97203 -10.67549 -10.49334 -9.97512 -9.59619 -8.47669 -6.19080 -0.91816 -0.40772 0.12052 1.21268 1.32334 1.38971 1.47811 1.89562 2.15906 2.29370 2.47462 2.73440 2.91739 3.21956 3.33733 3.60894 3.65913 3.96156 4.08951 4.16016 4.20383 4.25753 4.34973 4.38584 4.61105 4.64091 4.69211 4.74629 4.86274 4.95991 4.97744 5.04392 5.23202 5.24750 5.51354 5.55921 5.60711 5.63322 5.70477 6.24789 6.89844 7.09322 7.14236 8.63364 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.004417 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.626999 B = 6336.907481 C = 6479.798284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.048 4.048 3 C -0.049 4.049 4 C -0.627 4.627 5 S 2.644 3.356 6 O -0.999 6.999 7 O -0.994 6.994 8 N -0.841 5.841 9 C -0.310 4.310 10 H 0.071 0.929 11 C 0.062 3.938 12 N -0.887 5.887 13 Si 0.895 3.105 14 H -0.224 1.224 15 H -0.288 1.288 16 H -0.283 1.283 17 C 0.043 3.957 18 C -0.189 4.189 19 C -0.163 4.163 20 C -0.048 4.048 21 C -0.065 4.065 22 C -0.098 4.098 23 C 0.535 3.465 24 O -0.523 6.523 25 O -0.497 6.497 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.280 0.720 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -16.892 3.390 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.068 4.068 4 C -0.714 4.714 5 S 2.746 3.254 6 O -0.989 6.989 7 O -0.984 6.984 8 N -0.671 5.671 9 C -0.445 4.445 10 H 0.089 0.911 11 C -0.147 4.147 12 N -0.524 5.524 13 Si 0.719 3.281 14 H -0.147 1.147 15 H -0.214 1.214 16 H -0.208 1.208 17 C -0.064 4.064 18 C -0.228 4.228 19 C -0.202 4.202 20 C -0.067 4.067 21 C -0.084 4.084 22 C -0.099 4.099 23 C 0.380 3.620 24 O -0.414 6.414 25 O -0.311 6.311 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.156 0.844 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 2.132 -16.010 4.132 16.671 hybrid contribution -0.478 0.143 -0.072 0.504 sum 1.654 -15.867 4.060 16.461 Atomic orbital electron populations 1.21094 0.88400 1.03761 1.04086 1.20282 0.97958 0.91105 0.95531 1.20878 0.92236 0.99046 0.94616 1.31169 1.06390 1.20956 1.12920 1.03952 0.73126 0.74061 0.74295 1.93411 1.40273 1.86408 1.78783 1.93440 1.67845 1.59030 1.78100 1.52351 1.27304 1.62295 1.25133 1.18256 0.90171 1.04480 1.31584 0.91131 1.25939 0.99447 0.95438 0.93863 1.69932 1.40775 1.22759 1.18954 0.86570 0.83292 0.78214 0.80028 1.14710 1.21416 1.20845 1.21991 0.89209 1.05131 0.90064 1.23511 1.03145 0.99480 0.96666 1.23330 1.03113 0.92067 1.01696 1.21187 1.01580 0.90254 0.93683 1.21838 0.92271 0.99638 0.94642 1.19363 0.94520 0.90377 1.05686 1.20524 0.84810 0.84628 0.72046 1.90873 1.15927 1.88083 1.46525 1.84501 1.45210 1.17103 1.84333 0.89620 0.91016 0.89168 0.84448 0.91028 0.84714 0.88499 0.87213 0.85552 0.89770 0.81867 0.80087 0.69975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.63 71.24 0.61 -2.44 16 2 C -0.05 -1.40 5.91 -19.60 -0.12 -1.52 16 3 C -0.05 -1.69 9.13 22.23 0.20 -1.49 16 4 C -0.63 -22.30 5.98 22.33 0.13 -22.16 16 5 S 2.64 115.49 5.65 -56.49 -0.32 115.17 16 6 O -1.00 -43.47 16.12 -128.00 -2.06 -45.53 16 7 O -0.99 -50.52 16.47 -128.00 -2.11 -52.63 16 8 N -0.84 -38.00 2.47 -322.93 -0.80 -38.80 16 9 C -0.31 -16.12 8.63 84.03 0.73 -15.39 16 10 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 11 C 0.06 3.25 3.37 84.86 0.29 3.53 16 12 N -0.89 -48.49 13.97 21.65 0.30 -48.19 16 13 Si 0.90 41.61 25.35 68.60 1.74 43.35 16 14 H -0.22 -9.03 6.13 99.48 0.61 -8.42 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 17 C 0.04 1.64 4.90 44.99 0.22 1.86 16 18 C -0.19 -6.96 6.92 30.62 0.21 -6.75 16 19 C -0.16 -5.14 10.40 30.62 0.32 -4.82 16 20 C -0.05 -1.35 9.50 22.23 0.21 -1.14 16 21 C -0.07 -1.49 9.62 22.54 0.22 -1.27 16 22 C -0.10 -2.49 5.87 -20.10 -0.12 -2.61 16 23 C 0.54 11.43 8.20 70.33 0.58 12.00 16 24 O -0.52 -13.25 14.19 19.92 0.28 -12.97 16 25 O -0.50 -6.53 12.70 -56.17 -0.71 -7.24 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.07 1.79 8.02 -2.39 -0.02 1.77 16 28 H 0.09 2.34 6.05 -2.38 -0.01 2.33 16 29 H 0.14 5.03 7.58 -2.91 -0.02 5.00 16 30 H 0.28 14.28 8.31 -92.70 -0.77 13.51 16 31 H 0.14 4.68 7.52 -2.38 -0.02 4.66 16 32 H 0.10 4.28 5.17 -2.39 -0.01 4.27 16 33 H 0.11 3.41 7.99 -2.39 -0.02 3.39 16 34 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.16 3.97 7.60 -2.91 -0.02 3.94 16 37 H 0.18 2.73 7.63 -2.91 -0.02 2.70 16 38 H 0.44 1.48 9.11 -74.06 -0.67 0.80 16 Total: -1.00 -69.23 331.79 0.15 -69.08 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.35 Total: 19.96 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.48 Total: -42.20 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -0.50 Total: -86.99 kcal Atomic # 8 Polarization: -113.77 SS G_CDS: -4.60 Total: -118.37 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.74 Total: 43.35 kcal Atomic # 16 Polarization: 115.49 SS G_CDS: -0.32 Total: 115.17 kcal Total: -69.23 0.15 -69.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832900901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.582 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds