Wall clock time and date at job start Tue Mar 31 2020 14:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37973 * 120.07611 * 2 1 4 4 C 1.38345 * 120.14851 * 179.70977 * 3 2 1 5 5 C 1.38386 * 120.30261 * 0.54633 * 4 3 2 6 6 S 1.76205 * 119.92529 * 179.72778 * 5 4 3 7 7 O 1.42102 * 106.40267 * 156.18441 * 6 5 4 8 8 O 1.42095 * 106.40006 * 23.26547 * 6 5 4 9 9 N 1.65596 * 107.21695 * 269.72806 * 6 5 4 10 10 C 1.36936 * 120.00204 * 90.00072 * 9 6 5 11 11 H 1.08006 * 119.99923 * 227.06146 * 10 9 6 12 12 C 1.38807 * 120.00265 * 47.05751 * 10 9 6 13 13 N 1.31626 * 119.99848 * 28.36401 * 12 10 9 14 14 Si 1.86797 * 120.00268 * 208.36918 * 12 10 9 15 15 H 1.48495 * 109.47251 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47272 * 120.00049 * 14 12 10 17 17 H 1.48506 * 109.46975 * 239.99730 * 14 12 10 18 18 C 1.46498 * 119.99958 * 269.72368 * 9 6 5 19 19 C 1.53002 * 117.50093 * 193.20954 * 18 9 6 20 20 C 1.52997 * 117.50301 * 124.54665 * 18 9 6 21 21 C 1.37919 * 120.15088 * 359.45216 * 5 4 3 22 22 C 1.39600 * 120.07824 * 179.97438 * 2 1 3 23 23 C 1.47723 * 120.14875 * 359.97438 * 22 2 1 24 24 O 1.21468 * 120.00107 * 353.97168 * 23 22 2 25 25 O 1.34714 * 120.00151 * 173.97222 * 23 22 2 26 26 H 1.08999 * 109.46868 * 263.85940 * 1 2 3 27 27 H 1.09004 * 109.47076 * 23.85232 * 1 2 3 28 28 H 1.08999 * 109.47326 * 143.85555 * 1 2 3 29 29 H 1.08001 * 119.92538 * 359.95455 * 3 2 1 30 30 H 1.08004 * 119.84557 * 180.27346 * 4 3 2 31 31 H 0.96996 * 120.00099 * 184.89109 * 13 12 10 32 32 H 1.09003 * 115.55221 * 338.87672 * 18 9 6 33 33 H 1.09001 * 117.49838 * 359.97438 * 19 18 9 34 34 H 1.08997 * 117.50216 * 145.02497 * 19 18 9 35 35 H 1.08999 * 117.50220 * 214.98601 * 20 18 9 36 36 H 1.09002 * 117.49406 * 359.97438 * 20 18 9 37 37 H 1.08001 * 120.07909 * 180.25062 * 21 5 4 38 38 H 0.96702 * 116.99724 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1957 0.0061 5 6 4.2817 0.0018 0.0008 6 16 6.0437 0.0157 0.0013 7 8 6.4546 -1.2307 0.5461 8 8 6.4348 1.2687 0.5456 9 7 6.5343 0.0194 -1.5803 10 6 6.7278 1.2067 -2.2345 11 1 6.3161 1.3524 -3.2223 12 6 7.4530 2.2231 -1.6280 13 7 8.3914 1.9301 -0.7527 14 14 7.0972 4.0067 -2.0540 15 1 6.0048 4.0674 -3.0580 16 1 6.6844 4.7357 -0.8278 17 1 8.3202 4.6350 -2.6152 18 6 6.7671 -1.2477 -2.2779 19 6 7.5064 -1.1918 -3.6163 20 6 6.0046 -1.4864 -3.5826 21 6 3.6031 -1.1989 0.0008 22 6 2.2066 -1.2080 0.0005 23 6 1.4731 -2.4903 0.0017 24 8 0.2635 -2.4979 0.1126 25 8 2.1456 -3.6511 -0.1203 26 1 -0.3633 -0.1099 1.0218 27 1 -0.3633 0.9399 -0.4156 28 1 -0.3634 -0.8299 -0.6061 29 1 1.6585 2.1293 -0.0007 30 1 4.1182 2.1332 0.0105 31 1 8.8492 2.6403 -0.2765 32 1 6.9507 -2.1103 -1.6373 33 1 7.8191 -0.2123 -3.9780 34 1 8.1758 -2.0178 -3.8564 35 1 5.6867 -2.5060 -3.8005 36 1 5.3293 -0.7008 -3.9218 37 1 4.1504 -2.1299 0.0008 38 1 1.6224 -4.4643 -0.1139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832954083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:22 Heat of formation + Delta-G solvation = -96.727328 kcal Electronic energy + Delta-G solvation = -26320.791820 eV Core-core repulsion = 22449.852267 eV Total energy + Delta-G solvation = -3870.939553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47334 -38.48640 -37.21921 -36.15660 -35.76518 -34.23811 -33.34003 -32.57207 -31.21873 -30.69948 -27.22103 -25.02601 -24.23234 -22.12790 -21.61791 -21.04270 -20.56791 -18.99110 -18.22480 -17.71320 -16.44450 -16.02724 -15.84514 -15.67989 -15.27095 -15.14030 -14.70863 -14.26748 -13.96654 -13.70003 -13.50625 -13.32649 -13.20774 -12.41378 -12.27906 -12.06000 -11.83297 -11.67364 -11.52525 -11.51558 -11.42003 -11.15466 -10.89500 -10.67975 -10.53438 -10.43598 -10.33511 -10.20618 -10.05377 -9.70484 -9.45571 -8.89522 -8.77515 -8.66545 -7.64353 -6.60336 -4.22940 0.81109 1.29597 1.85857 2.58508 3.05299 3.16756 3.24099 3.28280 3.75117 4.07955 4.50050 4.67637 4.81996 4.85076 4.89275 5.14214 5.24949 5.32699 5.59124 5.66972 5.68255 5.71054 5.72459 5.79603 5.82480 5.97536 6.03985 6.18911 6.28625 6.33970 6.38385 6.48434 6.55998 6.63719 6.71361 6.96950 7.02577 7.32564 7.42367 7.90404 8.13302 8.80610 9.22582 10.42925 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.005407 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.681135 B = 5176.848758 C = 5957.363532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.008 3.992 3 C -0.162 4.162 4 C 0.020 3.980 5 C -0.679 4.679 6 S 2.561 3.439 7 O -1.009 7.009 8 O -0.944 6.944 9 N -0.785 5.785 10 C -0.282 4.282 11 H 0.084 0.916 12 C 0.064 3.936 13 N -0.766 5.766 14 Si 0.909 3.091 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.279 1.279 18 C 0.094 3.906 19 C -0.164 4.164 20 C -0.212 4.212 21 C 0.032 3.968 22 C -0.166 4.166 23 C 0.532 3.468 24 O -0.519 6.519 25 O -0.509 6.509 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.143 0.857 31 H 0.281 0.719 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 -3.885 -2.477 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.754 4.754 6 S 2.659 3.341 7 O -0.998 6.998 8 O -0.933 6.933 9 N -0.607 5.607 10 C -0.430 4.430 11 H 0.102 0.898 12 C -0.155 4.155 13 N -0.401 5.401 14 Si 0.734 3.266 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.205 1.205 18 C -0.015 4.015 19 C -0.203 4.203 20 C -0.252 4.252 21 C 0.013 3.987 22 C -0.168 4.168 23 C 0.378 3.622 24 O -0.410 6.410 25 O -0.320 6.320 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.151 0.849 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.163 0.837 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -8.864 -3.620 -1.361 9.671 hybrid contribution -1.250 0.310 -0.219 1.306 sum -10.114 -3.310 -1.580 10.758 Atomic orbital electron populations 1.21166 0.90122 1.03283 1.03529 1.20098 0.96434 0.91531 0.91200 1.21142 0.94605 0.97181 1.05124 1.21243 0.93748 0.97907 0.86967 1.32766 1.33619 0.97114 1.11930 1.10778 0.73449 0.73174 0.76685 1.93313 1.81410 1.45721 1.79379 1.93431 1.79224 1.42710 1.77895 1.52386 1.68954 1.07409 1.31919 1.18988 1.29963 0.90868 1.03145 0.89822 1.25612 0.92078 1.01307 0.96517 1.69948 1.14034 1.36003 1.20104 0.86178 0.78912 0.82575 0.78967 1.18776 1.19647 1.20479 1.21402 1.03254 0.88657 0.88167 1.23090 0.93452 1.03142 1.00600 1.23336 0.95445 1.01324 1.05058 1.21185 0.92289 0.98105 0.87154 1.18943 0.93909 0.89706 1.14264 1.20926 0.85220 0.84289 0.71774 1.90800 1.15264 1.87752 1.47196 1.84632 1.45196 1.16984 1.85184 0.90484 0.91882 0.88906 0.84927 0.83937 0.90842 0.86154 0.87344 0.89770 0.89788 0.88955 0.83739 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.75 36.01 0.32 -1.30 16 2 C 0.01 0.12 5.91 -104.21 -0.62 -0.49 16 3 C -0.16 -2.53 9.66 -39.64 -0.38 -2.91 16 4 C 0.02 0.38 9.52 -39.49 -0.38 0.00 16 5 C -0.68 -13.83 5.97 -39.64 -0.24 -14.07 16 6 S 2.56 61.19 5.47 -107.50 -0.59 60.61 16 7 O -1.01 -25.73 16.02 -57.17 -0.92 -26.64 16 8 O -0.94 -24.96 13.27 -57.17 -0.76 -25.72 16 9 N -0.79 -18.05 3.08 -53.43 -0.16 -18.21 16 10 C -0.28 -6.63 7.59 -15.06 -0.11 -6.75 16 11 H 0.08 1.86 7.82 -52.48 -0.41 1.45 16 12 C 0.06 1.57 3.88 -17.43 -0.07 1.50 16 13 N -0.77 -20.22 11.67 55.49 0.65 -19.57 16 14 Si 0.91 18.90 29.64 -169.99 -5.04 13.86 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 C 0.09 1.89 6.43 -67.93 -0.44 1.46 16 19 C -0.16 -2.87 9.86 -26.69 -0.26 -3.14 16 20 C -0.21 -3.55 10.18 -26.69 -0.27 -3.82 16 21 C 0.03 0.60 9.09 -39.17 -0.36 0.24 16 22 C -0.17 -2.81 5.87 -104.99 -0.62 -3.42 16 23 C 0.53 8.00 8.20 34.61 0.28 8.28 16 24 O -0.52 -8.13 14.12 -19.24 -0.27 -8.40 16 25 O -0.51 -6.26 12.70 -40.53 -0.51 -6.78 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 28 H 0.09 1.27 5.82 -51.93 -0.30 0.97 16 29 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.14 2.60 7.60 -52.48 -0.40 2.20 16 31 H 0.28 7.03 8.32 -40.82 -0.34 6.69 16 32 H 0.12 2.38 7.31 -51.93 -0.38 2.00 16 33 H 0.11 2.04 7.10 -51.93 -0.37 1.67 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.59 8.08 -51.93 -0.42 1.17 16 37 H 0.14 2.64 7.18 -52.49 -0.38 2.27 16 38 H 0.41 2.81 9.11 45.56 0.42 3.23 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -31.23 337.08 -9.15 -40.38 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.49 Total: 9.82 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -3.14 Total: -24.42 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.48 Total: -37.79 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: -2.46 Total: -67.54 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.04 Total: 13.86 kcal Atomic # 16 Polarization: 61.19 SS G_CDS: -0.59 Total: 60.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.23 -9.15 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832954083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.350 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds