Wall clock time and date at job start Tue Mar 31 2020 14:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37973 * 120.07611 * 2 1 4 4 C 1.38345 * 120.14851 * 179.70977 * 3 2 1 5 5 C 1.38386 * 120.30261 * 0.54633 * 4 3 2 6 6 S 1.76205 * 119.92529 * 179.72778 * 5 4 3 7 7 O 1.42102 * 106.40267 * 156.18441 * 6 5 4 8 8 O 1.42095 * 106.40006 * 23.26547 * 6 5 4 9 9 N 1.65596 * 107.21695 * 269.72806 * 6 5 4 10 10 C 1.36936 * 120.00204 * 90.00072 * 9 6 5 11 11 H 1.08006 * 119.99923 * 227.06146 * 10 9 6 12 12 C 1.38807 * 120.00265 * 47.05751 * 10 9 6 13 13 N 1.31626 * 119.99848 * 28.36401 * 12 10 9 14 14 Si 1.86797 * 120.00268 * 208.36918 * 12 10 9 15 15 H 1.48495 * 109.47251 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47272 * 120.00049 * 14 12 10 17 17 H 1.48506 * 109.46975 * 239.99730 * 14 12 10 18 18 C 1.46498 * 119.99958 * 269.72368 * 9 6 5 19 19 C 1.53002 * 117.50093 * 193.20954 * 18 9 6 20 20 C 1.52997 * 117.50301 * 124.54665 * 18 9 6 21 21 C 1.37919 * 120.15088 * 359.45216 * 5 4 3 22 22 C 1.39600 * 120.07824 * 179.97438 * 2 1 3 23 23 C 1.47723 * 120.14875 * 359.97438 * 22 2 1 24 24 O 1.21468 * 120.00107 * 353.97168 * 23 22 2 25 25 O 1.34714 * 120.00151 * 173.97222 * 23 22 2 26 26 H 1.08999 * 109.46868 * 263.85940 * 1 2 3 27 27 H 1.09004 * 109.47076 * 23.85232 * 1 2 3 28 28 H 1.08999 * 109.47326 * 143.85555 * 1 2 3 29 29 H 1.08001 * 119.92538 * 359.95455 * 3 2 1 30 30 H 1.08004 * 119.84557 * 180.27346 * 4 3 2 31 31 H 0.96996 * 120.00099 * 184.89109 * 13 12 10 32 32 H 1.09003 * 115.55221 * 338.87672 * 18 9 6 33 33 H 1.09001 * 117.49838 * 359.97438 * 19 18 9 34 34 H 1.08997 * 117.50216 * 145.02497 * 19 18 9 35 35 H 1.08999 * 117.50220 * 214.98601 * 20 18 9 36 36 H 1.09002 * 117.49406 * 359.97438 * 20 18 9 37 37 H 1.08001 * 120.07909 * 180.25062 * 21 5 4 38 38 H 0.96702 * 116.99724 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1957 0.0061 5 6 4.2817 0.0018 0.0008 6 16 6.0437 0.0157 0.0013 7 8 6.4546 -1.2307 0.5461 8 8 6.4348 1.2687 0.5456 9 7 6.5343 0.0194 -1.5803 10 6 6.7278 1.2067 -2.2345 11 1 6.3161 1.3524 -3.2223 12 6 7.4530 2.2231 -1.6280 13 7 8.3914 1.9301 -0.7527 14 14 7.0972 4.0067 -2.0540 15 1 6.0048 4.0674 -3.0580 16 1 6.6844 4.7357 -0.8278 17 1 8.3202 4.6350 -2.6152 18 6 6.7671 -1.2477 -2.2779 19 6 7.5064 -1.1918 -3.6163 20 6 6.0046 -1.4864 -3.5826 21 6 3.6031 -1.1989 0.0008 22 6 2.2066 -1.2080 0.0005 23 6 1.4731 -2.4903 0.0017 24 8 0.2635 -2.4979 0.1126 25 8 2.1456 -3.6511 -0.1203 26 1 -0.3633 -0.1099 1.0218 27 1 -0.3633 0.9399 -0.4156 28 1 -0.3634 -0.8299 -0.6061 29 1 1.6585 2.1293 -0.0007 30 1 4.1182 2.1332 0.0105 31 1 8.8492 2.6403 -0.2765 32 1 6.9507 -2.1103 -1.6373 33 1 7.8191 -0.2123 -3.9780 34 1 8.1758 -2.0178 -3.8564 35 1 5.6867 -2.5060 -3.8005 36 1 5.3293 -0.7008 -3.9218 37 1 4.1504 -2.1299 0.0008 38 1 1.6224 -4.4643 -0.1139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832954083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:21 Heat of formation + Delta-G solvation = -117.474023 kcal Electronic energy + Delta-G solvation = -26321.691464 eV Core-core repulsion = 22449.852267 eV Total energy + Delta-G solvation = -3871.839197 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65580 -39.75017 -38.77716 -37.70682 -37.24472 -36.18702 -35.06930 -33.85212 -32.54624 -32.44164 -28.43166 -26.81260 -25.49333 -23.38528 -22.99793 -22.42343 -22.13273 -20.75810 -19.53784 -19.00255 -18.17948 -17.67435 -17.20018 -17.03265 -16.80037 -16.60008 -16.13644 -15.92170 -15.46751 -15.09170 -14.97301 -14.62332 -14.33785 -14.08753 -13.60603 -13.38936 -13.21692 -13.16471 -13.06225 -12.91862 -12.81550 -12.58432 -12.56810 -12.47255 -12.30659 -12.11430 -11.96337 -11.68902 -11.52983 -11.18165 -10.98001 -10.45527 -10.25398 -10.10332 -9.35840 -8.40756 -6.07890 -0.50739 -0.12745 0.10862 1.35290 1.50704 1.55486 1.65752 1.99207 2.32284 2.43504 2.82603 2.99515 3.22898 3.44582 3.58220 3.72385 3.87572 3.98239 4.17030 4.25028 4.34260 4.37603 4.41560 4.51437 4.62784 4.73700 4.81251 4.83722 4.91783 4.97006 5.13570 5.17163 5.28227 5.33398 5.49516 5.52336 5.56855 5.72531 5.80173 6.30720 6.92173 7.02967 7.44516 8.62192 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.005407 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.681135 B = 5176.848758 C = 5957.363532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.013 3.987 3 C -0.150 4.150 4 C 0.004 3.996 5 C -0.698 4.698 6 S 2.572 3.428 7 O -1.036 7.036 8 O -0.979 6.979 9 N -0.798 5.798 10 C -0.288 4.288 11 H 0.095 0.905 12 C 0.024 3.976 13 N -0.816 5.816 14 Si 0.961 3.039 15 H -0.242 1.242 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.053 3.947 19 C -0.156 4.156 20 C -0.182 4.182 21 C 0.022 3.978 22 C -0.173 4.173 23 C 0.537 3.463 24 O -0.524 6.524 25 O -0.507 6.507 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.172 0.828 30 H 0.137 0.863 31 H 0.276 0.724 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 -4.033 -3.851 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.013 3.987 3 C -0.168 4.168 4 C -0.015 4.015 5 C -0.778 4.778 6 S 2.675 3.325 7 O -1.026 7.026 8 O -0.967 6.967 9 N -0.621 5.621 10 C -0.434 4.434 11 H 0.112 0.888 12 C -0.191 4.191 13 N -0.453 5.453 14 Si 0.783 3.217 15 H -0.165 1.165 16 H -0.209 1.209 17 H -0.198 1.198 18 C -0.055 4.055 19 C -0.196 4.196 20 C -0.221 4.221 21 C 0.003 3.997 22 C -0.175 4.175 23 C 0.383 3.617 24 O -0.416 6.416 25 O -0.321 6.321 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.190 0.810 30 H 0.155 0.845 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.158 0.842 38 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -11.752 -3.796 -2.786 12.660 hybrid contribution -0.502 0.183 0.246 0.588 sum -12.254 -3.613 -2.540 13.026 Atomic orbital electron populations 1.21211 0.87616 1.04687 1.04119 1.20556 0.98143 0.90947 0.89096 1.21503 0.93253 0.98976 1.03041 1.21338 0.95340 0.96909 0.87948 1.32105 1.31440 0.98891 1.15394 1.09562 0.74431 0.71952 0.76571 1.93264 1.82722 1.46586 1.80068 1.93386 1.80799 1.43823 1.78740 1.52256 1.69976 1.08323 1.31513 1.19218 1.29577 0.91046 1.03552 0.88774 1.26473 0.91540 1.04850 0.96245 1.70039 1.16029 1.36739 1.22465 0.85387 0.79536 0.78131 0.78621 1.16462 1.20933 1.19828 1.21647 1.07016 0.87610 0.89276 1.23147 0.94778 1.03424 0.98219 1.23354 0.94725 1.02882 1.01173 1.21148 0.93415 0.97237 0.87904 1.19205 0.93193 0.91563 1.13557 1.20567 0.84874 0.84471 0.71773 1.90805 1.15276 1.88001 1.47529 1.84583 1.45567 1.17489 1.84490 0.89596 0.88994 0.89473 0.81016 0.84475 0.91354 0.86811 0.88816 0.87171 0.86738 0.89260 0.84207 0.70264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.75 71.24 0.62 -1.99 16 2 C 0.01 0.37 5.91 -19.60 -0.12 0.26 16 3 C -0.15 -4.24 9.66 22.23 0.21 -4.03 16 4 C 0.00 0.14 9.52 22.33 0.21 0.35 16 5 C -0.70 -28.69 5.97 22.23 0.13 -28.55 16 6 S 2.57 127.57 5.47 -56.49 -0.31 127.26 16 7 O -1.04 -55.22 16.02 -128.00 -2.05 -57.27 16 8 O -0.98 -54.12 13.27 -128.00 -1.70 -55.81 16 9 N -0.80 -37.59 3.08 -322.94 -1.00 -38.59 16 10 C -0.29 -13.74 7.59 84.03 0.64 -13.11 16 11 H 0.09 4.17 7.82 -2.91 -0.02 4.15 16 12 C 0.02 1.18 3.88 84.86 0.33 1.51 16 13 N -0.82 -45.01 11.67 21.65 0.25 -44.76 16 14 Si 0.96 39.03 29.64 68.60 2.03 41.07 16 15 H -0.24 -8.84 7.11 99.48 0.71 -8.14 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 18 C 0.05 2.13 6.43 44.99 0.29 2.42 16 19 C -0.16 -5.36 9.86 30.62 0.30 -5.05 16 20 C -0.18 -5.78 10.18 30.62 0.31 -5.47 16 21 C 0.02 0.83 9.09 22.54 0.20 1.03 16 22 C -0.17 -5.52 5.87 -20.10 -0.12 -5.64 16 23 C 0.54 14.90 8.20 70.33 0.58 15.47 16 24 O -0.52 -14.90 14.12 19.94 0.28 -14.61 16 25 O -0.51 -11.34 12.70 -56.24 -0.71 -12.05 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 1.49 8.05 -2.38 -0.02 1.47 16 28 H 0.09 2.06 5.82 -2.39 -0.01 2.05 16 29 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.14 5.04 7.60 -2.91 -0.02 5.02 16 31 H 0.28 14.61 8.32 -92.71 -0.77 13.84 16 32 H 0.11 4.64 7.31 -2.39 -0.02 4.63 16 33 H 0.09 3.50 7.10 -2.39 -0.02 3.48 16 34 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.09 2.91 8.08 -2.39 -0.02 2.89 16 37 H 0.14 5.19 7.18 -2.91 -0.02 5.16 16 38 H 0.43 4.74 9.11 -74.06 -0.67 4.07 16 Total: -1.00 -69.79 337.08 0.84 -68.95 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.44 Total: 28.62 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 3.60 Total: -42.79 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -0.74 Total: -83.35 kcal Atomic # 8 Polarization: -135.58 SS G_CDS: -4.18 Total: -139.76 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.07 kcal Atomic # 16 Polarization: 127.57 SS G_CDS: -0.31 Total: 127.26 kcal Total: -69.79 0.84 -68.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832954083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.523 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds