Wall clock time and date at job start Tue Mar 31 2020 13:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48506 * 109.47044 * 270.00107 * 3 2 1 5 5 H 1.48504 * 109.47084 * 30.00145 * 3 2 1 6 6 H 1.48499 * 109.47607 * 150.00299 * 3 2 1 7 7 C 1.38816 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99763 * 163.06763 * 7 2 1 9 9 N 1.36938 * 119.99897 * 343.07680 * 7 2 1 10 10 C 1.46924 * 120.62979 * 331.84317 * 9 7 2 11 11 C 1.53198 * 108.77219 * 233.59103 * 10 9 7 12 12 C 1.53037 * 109.31166 * 305.36236 * 11 10 9 13 13 O 1.45198 * 109.46001 * 181.38621 * 12 11 10 14 14 C 1.34826 * 117.00054 * 150.00099 * 13 12 11 15 15 O 1.21539 * 119.99980 * 0.02562 * 14 13 12 16 16 C 1.47040 * 119.99970 * 180.02562 * 14 13 12 17 17 C 1.36708 * 125.16396 * 180.02562 * 16 14 13 18 18 C 1.36733 * 114.74468 * 180.02562 * 17 16 14 19 19 C 1.36701 * 114.74400 * 0.02562 * 18 17 16 20 20 C 1.47044 * 125.16161 * 180.02562 * 19 18 17 21 21 O 1.21547 * 120.00358 * 0.02562 * 20 19 18 22 22 O 1.34819 * 120.00110 * 179.97438 * 20 19 18 23 23 S 1.75835 * 109.67779 * 0.02562 * 19 18 17 24 24 C 1.53044 * 109.53874 * 61.36891 * 12 11 10 25 25 C 1.46928 * 120.62968 * 151.82607 * 9 7 2 26 26 H 0.96998 * 119.99563 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.58338 * 113.80729 * 10 9 7 28 28 H 1.08998 * 109.70348 * 353.44719 * 10 9 7 29 29 H 1.09000 * 109.49465 * 185.41759 * 11 10 9 30 30 H 1.08990 * 109.52529 * 65.33566 * 11 10 9 31 31 H 1.09004 * 109.46327 * 301.36119 * 12 11 10 32 32 H 1.08005 * 122.61947 * 359.97438 * 17 16 14 33 33 H 1.08008 * 122.63032 * 180.02562 * 18 17 16 34 34 H 0.96705 * 116.99922 * 180.02562 * 22 20 19 35 35 H 1.08999 * 109.49523 * 58.58032 * 24 12 11 36 36 H 1.09000 * 109.49694 * 178.68337 * 24 12 11 37 37 H 1.09001 * 109.58390 * 246.20014 * 25 9 7 38 38 H 1.09004 * 109.58474 * 6.47618 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2719 9 7 1.3699 -2.3623 0.3463 10 6 0.2260 -2.3398 1.2679 11 6 0.4974 -3.3189 2.4146 12 6 0.8118 -4.7005 1.8366 13 8 1.0374 -5.6388 2.9214 14 6 0.7169 -6.9282 2.6922 15 8 0.2618 -7.2590 1.6148 16 6 0.9178 -7.9343 3.7455 17 6 0.6310 -9.2657 3.6277 18 6 0.9015 -10.0103 4.7421 19 6 1.4144 -9.3020 5.7928 20 6 1.7867 -9.8712 7.0965 21 8 1.6457 -11.0607 7.3030 22 8 2.2854 -9.0739 8.0626 23 16 1.5613 -7.6070 5.3489 24 6 2.0672 -4.6173 0.9652 25 6 1.8137 -3.6530 -0.1977 26 1 -0.4849 0.8401 0.0004 27 1 -0.6771 -2.6404 0.7368 28 1 0.0966 -1.3345 1.6687 29 1 -0.3832 -3.3837 3.0536 30 1 1.3468 -2.9675 3.0002 31 1 -0.0283 -5.0407 1.2310 32 1 0.2218 -9.6955 2.7252 33 1 0.7240 -11.0747 4.7886 34 1 2.5160 -9.4937 8.9027 35 1 2.9021 -4.2534 1.5641 36 1 2.3039 -5.6062 0.5728 37 1 1.0401 -4.0606 -0.8485 38 1 2.7331 -3.5131 -0.7664 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:15 Heat of formation + Delta-G solvation = -137.722511 kcal Electronic energy + Delta-G solvation = -24318.967996 eV Core-core repulsion = 20446.250759 eV Total energy + Delta-G solvation = -3872.717238 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71766 -41.24505 -39.35101 -38.47989 -37.33564 -37.09301 -34.62326 -32.30517 -31.74120 -31.31823 -27.98078 -26.88500 -24.55407 -23.94344 -23.59483 -22.74888 -21.09532 -20.25843 -20.08207 -19.09800 -18.85232 -18.30991 -17.23094 -17.13877 -16.92052 -16.82703 -16.70345 -15.81600 -15.42332 -15.12430 -14.92430 -14.74335 -14.45932 -14.33034 -14.19691 -13.94545 -13.49376 -13.29894 -13.07743 -12.77393 -12.70525 -12.61230 -12.50527 -12.36974 -12.15920 -12.00955 -11.92256 -11.90510 -11.75423 -11.44919 -11.12000 -10.56355 -10.28189 -9.81994 -8.76062 -7.90787 -5.36456 -1.31675 0.06130 0.54410 0.62766 1.37383 1.47831 1.48947 1.50303 1.60057 1.79618 1.84155 2.50950 3.25620 3.42274 3.60338 3.76188 3.81295 3.87012 4.05669 4.11959 4.15054 4.34660 4.55505 4.63691 4.72576 4.78035 4.84020 4.88669 4.94561 5.03209 5.04401 5.20262 5.31922 5.39890 5.41748 5.62128 5.67253 6.36121 6.46348 6.80265 7.11164 7.79501 8.32212 9.17097 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.002434 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.579391 B =11500.101455 C =12071.745308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.180 3.820 11 C -0.122 4.122 12 C 0.107 3.893 13 O -0.349 6.349 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.245 4.245 17 C -0.056 4.056 18 C -0.054 4.054 19 C -0.245 4.245 20 C 0.566 3.434 21 O -0.526 6.526 22 O -0.504 6.504 23 S 0.314 5.686 24 C -0.134 4.134 25 C 0.146 3.854 26 H 0.252 0.748 27 H 0.002 0.998 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.442 0.558 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.016 0.984 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -19.666 15.497 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.054 3.946 11 C -0.161 4.161 12 C 0.053 3.947 13 O -0.266 6.266 14 C 0.376 3.624 15 O -0.407 6.407 16 C -0.365 4.365 17 C -0.090 4.090 18 C -0.088 4.088 19 C -0.365 4.365 20 C 0.409 3.591 21 O -0.417 6.417 22 O -0.319 6.319 23 S 0.587 5.413 24 C -0.173 4.173 25 C 0.021 3.979 26 H 0.061 0.939 27 H 0.020 0.980 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.193 0.807 33 H 0.200 0.800 34 H 0.306 0.694 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.721 -18.320 15.649 24.379 hybrid contribution -0.346 -0.470 -0.704 0.914 sum 3.375 -18.790 14.945 24.245 Atomic orbital electron populations 1.70163 1.06693 1.26110 1.55113 1.25826 0.96062 1.01590 1.00901 0.85261 0.78131 0.79374 0.77559 1.21225 1.21768 1.19408 1.19508 0.92973 0.85736 1.41334 0.91271 1.44380 1.35924 1.02420 1.50667 1.20593 0.88038 0.97593 0.88363 1.22204 1.02366 0.92048 0.99489 1.22748 0.98807 0.87007 0.86099 1.86608 1.77253 1.17572 1.45119 1.20103 0.74205 0.82184 0.85906 1.90866 1.42460 1.81253 1.26093 1.24106 1.15354 0.97066 0.99949 1.20749 0.97624 0.89757 1.00832 1.20695 0.95900 1.02961 0.89236 1.24159 1.14613 1.00134 0.97597 1.19284 0.73176 0.83358 0.83235 1.90948 1.52252 1.17211 1.81314 1.84543 1.75205 1.44485 1.27659 1.84638 1.53882 1.01638 1.01135 1.22303 0.97168 1.00023 0.97853 1.20959 0.98135 0.85532 0.93318 0.93889 0.97986 0.91243 0.90267 0.91130 0.91070 0.80700 0.79970 0.69430 0.90886 0.90954 0.96632 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.33 11.19 21.65 0.24 -54.09 16 2 C -0.05 -2.65 4.92 84.86 0.42 -2.23 16 3 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 4 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.27 -14.35 9.58 84.03 0.81 -13.55 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 9 N -0.61 -30.36 2.99 -699.09 -2.09 -32.45 16 10 C 0.18 8.53 5.30 86.36 0.46 8.98 16 11 C -0.12 -4.53 5.74 30.67 0.18 -4.36 16 12 C 0.11 3.75 2.42 30.62 0.07 3.83 16 13 O -0.35 -10.66 9.73 -57.39 -0.56 -11.22 16 14 C 0.53 15.25 7.92 70.13 0.56 15.80 16 15 O -0.52 -17.32 16.08 19.71 0.32 -17.01 16 16 C -0.24 -5.23 6.46 24.22 0.16 -5.07 16 17 C -0.06 -0.93 9.88 21.56 0.21 -0.72 16 18 C -0.05 -0.77 9.88 21.56 0.21 -0.55 16 19 C -0.24 -3.85 6.46 24.22 0.16 -3.69 16 20 C 0.57 8.68 8.32 70.13 0.58 9.26 16 21 O -0.53 -10.62 17.60 19.68 0.35 -10.27 16 22 O -0.50 -4.88 13.28 -57.31 -0.76 -5.64 16 23 S 0.31 5.41 22.95 -56.49 -1.30 4.11 16 24 C -0.13 -4.70 5.72 30.67 0.18 -4.53 16 25 C 0.15 6.10 6.52 86.36 0.56 6.67 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.67 7.16 -2.38 -0.02 2.66 16 32 H 0.18 2.51 8.04 -2.91 -0.02 2.49 16 33 H 0.18 1.86 8.04 -2.91 -0.02 1.84 16 34 H 0.44 0.00 9.11 -74.05 -0.67 -0.67 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 2.68 7.93 -2.39 -0.02 2.67 16 Total: -1.00 -69.22 345.25 3.21 -66.01 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 0.44 Total: 4.75 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 4.55 Total: 9.84 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -1.85 Total: -86.55 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.66 Total: -44.13 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.30 Total: 4.11 kcal Total: -69.22 3.21 -66.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.717 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds