Wall clock time and date at job start Tue Mar 31 2020 14:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37970 * 120.07404 * 2 1 4 4 C 1.38346 * 120.14751 * 180.25205 * 3 2 1 5 5 C 1.38384 * 120.30460 * 359.79576 * 4 3 2 6 6 C 1.37920 * 120.14998 * 359.96789 * 5 4 3 7 7 S 1.76199 * 120.07480 * 180.02562 * 6 5 4 8 8 O 1.42099 * 106.40146 * 228.52279 * 7 6 5 9 9 O 1.42105 * 106.40333 * 1.44100 * 7 6 5 10 10 N 1.65604 * 107.21765 * 114.98181 * 7 6 5 11 11 C 1.36931 * 120.00006 * 90.00090 * 10 7 6 12 12 H 1.08000 * 119.99995 * 232.43498 * 11 10 7 13 13 C 1.38817 * 120.00187 * 52.42739 * 11 10 7 14 14 N 1.31617 * 119.99881 * 15.93896 * 13 11 10 15 15 Si 1.86802 * 120.00084 * 195.93786 * 13 11 10 16 16 H 1.48503 * 109.46791 * 60.00309 * 15 13 11 17 17 H 1.48497 * 109.47083 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47220 * 300.00141 * 15 13 11 19 19 C 1.46493 * 119.99911 * 269.99937 * 10 7 6 20 20 C 1.52999 * 117.49890 * 190.65556 * 19 10 7 21 21 C 1.52994 * 60.00057 * 252.51059 * 20 19 10 22 22 C 1.39600 * 120.08137 * 179.79022 * 2 1 3 23 23 C 1.47727 * 120.14744 * 0.02562 * 22 2 1 24 24 O 1.21474 * 119.99871 * 269.72063 * 23 22 2 25 25 O 1.34708 * 120.00553 * 89.72142 * 23 22 2 26 26 H 1.08994 * 109.46847 * 270.20677 * 1 2 3 27 27 H 1.08997 * 109.47126 * 30.20886 * 1 2 3 28 28 H 1.09003 * 109.46762 * 150.20718 * 1 2 3 29 29 H 1.08004 * 119.92306 * 0.02562 * 3 2 1 30 30 H 1.08008 * 119.84459 * 179.76430 * 4 3 2 31 31 H 1.08004 * 119.92415 * 179.97438 * 5 4 3 32 32 H 0.96995 * 119.99837 * 174.46405 * 14 13 11 33 33 H 1.09000 * 115.55354 * 336.35937 * 19 10 7 34 34 H 1.09002 * 117.49718 * 359.97438 * 20 19 10 35 35 H 1.09000 * 117.50368 * 145.02443 * 20 19 10 36 36 H 1.09003 * 117.50035 * 252.51197 * 21 20 19 37 37 H 1.08998 * 117.50242 * 107.48772 * 21 20 19 38 38 H 0.96702 * 117.00552 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1957 -0.0053 5 6 4.2817 0.0019 -0.0063 6 6 3.6032 -1.1988 -0.0014 7 16 4.4962 -2.7177 -0.0021 8 8 3.9173 -3.5231 -1.0196 9 8 5.8745 -2.3729 0.0262 10 7 4.1744 -3.4762 1.4345 11 6 3.1128 -4.3356 1.5322 12 1 2.3833 -4.2056 2.3179 13 6 2.9740 -5.3737 0.6211 14 7 3.9943 -5.7314 -0.1294 15 14 1.3392 -6.2632 0.4605 16 1 0.2857 -5.2946 0.0639 17 1 1.4516 -7.3226 -0.5739 18 1 0.9805 -6.8788 1.7634 19 6 5.0254 -3.2279 2.6006 20 6 4.8375 -4.1348 3.8184 21 6 4.3531 -2.6843 3.8629 22 6 2.2068 -1.2080 0.0044 23 6 1.4732 -2.4903 0.0085 24 8 1.1757 -3.0164 1.0622 25 8 1.1343 -3.0762 -1.1561 26 1 -0.3633 0.0037 1.0276 27 1 -0.3633 0.8881 -0.5171 28 1 -0.3633 -0.8919 -0.5106 29 1 1.6584 2.1293 0.0004 30 1 4.1182 2.1333 -0.0091 31 1 5.3617 0.0105 -0.0108 32 1 3.9227 -6.5070 -0.7075 33 1 6.0359 -2.8834 2.3805 34 1 4.0803 -4.9161 3.7520 35 1 5.7243 -4.3874 4.3996 36 1 4.9214 -1.9824 4.4734 37 1 3.2776 -2.5114 3.8256 38 1 0.6546 -3.9142 -1.1028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833753588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:26 Heat of formation + Delta-G solvation = -79.336190 kcal Electronic energy + Delta-G solvation = -27885.993460 eV Core-core repulsion = 24015.808043 eV Total energy + Delta-G solvation = -3870.185417 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.85723 -38.19249 -37.14798 -35.55476 -35.13747 -34.05787 -33.28130 -32.65378 -31.07168 -30.59471 -26.98721 -24.99899 -24.11174 -22.05508 -21.52963 -20.59500 -20.39920 -18.84193 -17.59120 -17.23542 -16.50308 -16.14280 -15.91741 -15.50431 -15.15837 -14.52236 -14.31601 -13.89926 -13.76955 -13.65315 -13.43034 -13.23986 -12.75127 -12.40760 -12.22870 -11.96924 -11.76877 -11.67674 -11.36086 -11.17273 -11.10658 -10.78916 -10.62279 -10.52707 -10.48602 -10.33583 -10.23292 -9.85154 -9.74144 -9.56144 -9.31802 -8.85108 -8.65108 -8.47985 -7.47867 -6.56723 -4.13129 1.21199 1.46618 1.96179 2.90674 3.06581 3.16962 3.22439 3.63715 3.86966 4.05731 4.54735 4.73104 4.89535 4.92602 5.02121 5.24508 5.36598 5.44536 5.65443 5.67457 5.75558 5.80389 5.82679 5.87839 5.90446 6.06929 6.19232 6.33222 6.35307 6.40471 6.51467 6.59685 6.66175 6.79781 7.02966 7.12420 7.22756 7.42013 7.51595 8.25251 8.65314 8.82291 9.28342 10.48086 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.008710 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.349995 B = 3213.826350 C = 4078.299841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.097 4.097 4 C -0.127 4.127 5 C -0.049 4.049 6 C -0.622 4.622 7 S 2.525 3.475 8 O -0.926 6.926 9 O -1.014 7.014 10 N -0.783 5.783 11 C -0.235 4.235 12 H 0.095 0.905 13 C 0.045 3.955 14 N -0.766 5.766 15 Si 0.936 3.064 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.098 3.902 20 C -0.163 4.163 21 C -0.211 4.211 22 C -0.003 4.003 23 C 0.499 3.501 24 O -0.452 6.452 25 O -0.499 6.499 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.282 0.718 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 7.769 2.438 9.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.115 4.115 4 C -0.146 4.146 5 C -0.068 4.068 6 C -0.696 4.696 7 S 2.624 3.376 8 O -0.914 6.914 9 O -1.003 7.003 10 N -0.604 5.604 11 C -0.385 4.385 12 H 0.112 0.888 13 C -0.173 4.173 14 N -0.403 5.403 15 Si 0.763 3.237 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.011 4.011 20 C -0.202 4.202 21 C -0.252 4.252 22 C -0.005 4.005 23 C 0.339 3.661 24 O -0.337 6.337 25 O -0.311 6.311 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.249 7.957 1.652 9.170 hybrid contribution -1.344 -0.189 0.036 1.358 sum -5.593 7.769 1.688 9.720 Atomic orbital electron populations 1.20850 0.90787 1.03000 1.02734 1.19908 0.95993 0.92040 1.00079 1.20972 0.94331 0.96842 0.99348 1.21364 0.94304 0.98252 1.00659 1.20916 1.00372 0.90949 0.94561 1.33269 1.04212 1.25295 1.06822 1.12675 0.74896 0.72433 0.77556 1.93484 1.77491 1.62968 1.57433 1.93268 1.34477 1.84782 1.87813 1.52492 1.36725 1.45889 1.25287 1.19297 1.01614 1.02430 1.15156 0.88769 1.25857 0.98600 0.96762 0.96126 1.69774 1.30190 1.21271 1.19080 0.85979 0.81406 0.78017 0.78285 1.19689 1.20982 1.19620 1.21348 0.93961 1.03528 0.82222 1.23076 1.02899 0.93962 1.00264 1.23335 1.01508 0.96890 1.03417 1.18464 0.92031 0.90631 0.99358 1.20494 0.79238 0.84401 0.82004 1.90904 1.48534 1.61934 1.32351 1.84615 1.71198 1.40355 1.34948 0.90676 0.91067 0.91429 0.85563 0.85633 0.84400 0.90767 0.86283 0.87379 0.89810 0.89899 0.88769 0.74019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.62 36.01 0.35 -1.27 16 2 C -0.08 -1.37 5.91 -104.21 -0.62 -1.99 16 3 C -0.10 -1.44 9.69 -39.64 -0.38 -1.82 16 4 C -0.13 -1.97 10.04 -39.49 -0.40 -2.37 16 5 C -0.05 -0.95 9.54 -39.64 -0.38 -1.32 16 6 C -0.62 -13.90 5.94 -39.17 -0.23 -14.13 16 7 S 2.53 64.76 4.91 -107.50 -0.53 64.23 16 8 O -0.93 -25.92 12.23 -62.52 -0.76 -26.69 16 9 O -1.01 -27.30 15.74 -57.17 -0.90 -28.20 16 10 N -0.78 -19.13 3.02 -53.43 -0.16 -19.29 16 11 C -0.23 -5.78 3.93 -15.06 -0.06 -5.84 16 12 H 0.09 2.31 6.74 -52.49 -0.35 1.96 16 13 C 0.04 1.12 4.18 -17.43 -0.07 1.04 16 14 N -0.77 -20.59 11.15 55.49 0.62 -19.97 16 15 Si 0.94 19.74 27.34 -169.99 -4.65 15.09 16 16 H -0.27 -5.30 5.34 56.52 0.30 -4.99 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 C 0.10 2.10 6.41 -67.94 -0.44 1.67 16 20 C -0.16 -3.01 9.85 -26.73 -0.26 -3.27 16 21 C -0.21 -3.82 10.23 -26.74 -0.27 -4.10 16 22 C 0.00 -0.06 5.75 -104.99 -0.60 -0.66 16 23 C 0.50 10.97 3.42 34.61 0.12 11.09 16 24 O -0.45 -10.26 12.15 -19.25 -0.23 -10.49 16 25 O -0.50 -10.57 12.76 -44.78 -0.57 -11.14 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 28 H 0.07 0.98 7.08 -51.93 -0.37 0.61 16 29 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 30 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.14 2.55 7.33 -52.48 -0.38 2.17 16 32 H 0.28 7.14 8.32 -40.82 -0.34 6.80 16 33 H 0.12 2.51 7.34 -51.93 -0.38 2.13 16 34 H 0.11 2.13 7.12 -51.93 -0.37 1.76 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.40 7.49 6.27 45.56 0.29 7.77 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -31.70 320.37 -9.38 -41.07 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -3.76 Total: 13.54 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.25 Total: -22.98 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.46 Total: -39.26 kcal Atomic # 8 Polarization: -74.05 SS G_CDS: -2.47 Total: -76.52 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.65 Total: 15.09 kcal Atomic # 16 Polarization: 64.76 SS G_CDS: -0.53 Total: 64.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.70 -9.38 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833753588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.266 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds