Wall clock time and date at job start Tue Mar 31 2020 14:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37970 * 120.07404 * 2 1 4 4 C 1.38346 * 120.14751 * 180.25205 * 3 2 1 5 5 C 1.38384 * 120.30460 * 359.79576 * 4 3 2 6 6 C 1.37920 * 120.14998 * 359.96789 * 5 4 3 7 7 S 1.76199 * 120.07480 * 180.02562 * 6 5 4 8 8 O 1.42099 * 106.40146 * 228.52279 * 7 6 5 9 9 O 1.42105 * 106.40333 * 1.44100 * 7 6 5 10 10 N 1.65604 * 107.21765 * 114.98181 * 7 6 5 11 11 C 1.36931 * 120.00006 * 90.00090 * 10 7 6 12 12 H 1.08000 * 119.99995 * 232.43498 * 11 10 7 13 13 C 1.38817 * 120.00187 * 52.42739 * 11 10 7 14 14 N 1.31617 * 119.99881 * 15.93896 * 13 11 10 15 15 Si 1.86802 * 120.00084 * 195.93786 * 13 11 10 16 16 H 1.48503 * 109.46791 * 60.00309 * 15 13 11 17 17 H 1.48497 * 109.47083 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47220 * 300.00141 * 15 13 11 19 19 C 1.46493 * 119.99911 * 269.99937 * 10 7 6 20 20 C 1.52999 * 117.49890 * 190.65556 * 19 10 7 21 21 C 1.52994 * 60.00057 * 252.51059 * 20 19 10 22 22 C 1.39600 * 120.08137 * 179.79022 * 2 1 3 23 23 C 1.47727 * 120.14744 * 0.02562 * 22 2 1 24 24 O 1.21474 * 119.99871 * 269.72063 * 23 22 2 25 25 O 1.34708 * 120.00553 * 89.72142 * 23 22 2 26 26 H 1.08994 * 109.46847 * 270.20677 * 1 2 3 27 27 H 1.08997 * 109.47126 * 30.20886 * 1 2 3 28 28 H 1.09003 * 109.46762 * 150.20718 * 1 2 3 29 29 H 1.08004 * 119.92306 * 0.02562 * 3 2 1 30 30 H 1.08008 * 119.84459 * 179.76430 * 4 3 2 31 31 H 1.08004 * 119.92415 * 179.97438 * 5 4 3 32 32 H 0.96995 * 119.99837 * 174.46405 * 14 13 11 33 33 H 1.09000 * 115.55354 * 336.35937 * 19 10 7 34 34 H 1.09002 * 117.49718 * 359.97438 * 20 19 10 35 35 H 1.09000 * 117.50368 * 145.02443 * 20 19 10 36 36 H 1.09003 * 117.50035 * 252.51197 * 21 20 19 37 37 H 1.08998 * 117.50242 * 107.48772 * 21 20 19 38 38 H 0.96702 * 117.00552 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1957 -0.0053 5 6 4.2817 0.0019 -0.0063 6 6 3.6032 -1.1988 -0.0014 7 16 4.4962 -2.7177 -0.0021 8 8 3.9173 -3.5231 -1.0196 9 8 5.8745 -2.3729 0.0262 10 7 4.1744 -3.4762 1.4345 11 6 3.1128 -4.3356 1.5322 12 1 2.3833 -4.2056 2.3179 13 6 2.9740 -5.3737 0.6211 14 7 3.9943 -5.7314 -0.1294 15 14 1.3392 -6.2632 0.4605 16 1 0.2857 -5.2946 0.0639 17 1 1.4516 -7.3226 -0.5739 18 1 0.9805 -6.8788 1.7634 19 6 5.0254 -3.2279 2.6006 20 6 4.8375 -4.1348 3.8184 21 6 4.3531 -2.6843 3.8629 22 6 2.2068 -1.2080 0.0044 23 6 1.4732 -2.4903 0.0085 24 8 1.1757 -3.0164 1.0622 25 8 1.1343 -3.0762 -1.1561 26 1 -0.3633 0.0037 1.0276 27 1 -0.3633 0.8881 -0.5171 28 1 -0.3633 -0.8919 -0.5106 29 1 1.6584 2.1293 0.0004 30 1 4.1182 2.1333 -0.0091 31 1 5.3617 0.0105 -0.0108 32 1 3.9227 -6.5070 -0.7075 33 1 6.0359 -2.8834 2.3805 34 1 4.0803 -4.9161 3.7520 35 1 5.7243 -4.3874 4.3996 36 1 4.9214 -1.9824 4.4734 37 1 3.2776 -2.5114 3.8256 38 1 0.6546 -3.9142 -1.1028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833753588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:25 Heat of formation + Delta-G solvation = -101.331988 kcal Electronic energy + Delta-G solvation = -27886.947269 eV Core-core repulsion = 24015.808043 eV Total energy + Delta-G solvation = -3871.139226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41367 -39.66595 -38.79766 -37.56650 -36.82890 -36.07928 -35.09720 -33.94738 -32.58912 -32.31345 -28.22313 -26.86393 -25.59259 -23.51489 -23.00876 -22.26407 -21.89250 -20.70818 -19.20924 -18.97877 -18.17221 -17.86383 -17.58057 -17.17480 -16.91704 -16.08151 -15.88412 -15.43335 -15.40052 -15.13213 -14.95858 -14.71930 -14.27599 -14.06660 -13.68090 -13.38901 -13.17297 -13.07698 -13.04062 -12.90136 -12.51543 -12.50702 -12.41761 -12.26925 -12.21308 -12.14329 -12.08491 -11.55853 -11.43466 -11.22989 -10.97222 -10.53783 -10.20057 -9.84083 -9.26346 -8.43653 -6.05242 -0.25388 0.07893 0.14799 1.23505 1.38045 1.44289 1.55706 2.16392 2.27272 2.44775 2.79557 2.99822 3.18384 3.44152 3.66230 3.85713 4.07704 4.15761 4.18115 4.24550 4.32724 4.36919 4.38701 4.55337 4.67235 4.71428 4.79074 4.83349 4.92436 5.11123 5.14956 5.23390 5.25343 5.29918 5.44903 5.53347 5.64830 5.80102 5.84290 6.33816 6.96593 7.02078 7.42595 8.61665 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.008710 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.349995 B = 3213.826350 C = 4078.299841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.078 4.078 4 C -0.112 4.112 5 C -0.069 4.069 6 C -0.653 4.653 7 S 2.529 3.471 8 O -0.963 6.963 9 O -1.042 7.042 10 N -0.795 5.795 11 C -0.233 4.233 12 H 0.091 0.909 13 C 0.008 3.992 14 N -0.812 5.812 15 Si 0.973 3.027 16 H -0.252 1.252 17 H -0.283 1.283 18 H -0.260 1.260 19 C 0.056 3.944 20 C -0.151 4.151 21 C -0.184 4.184 22 C -0.038 4.038 23 C 0.500 3.500 24 O -0.469 6.469 25 O -0.506 6.506 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.053 0.947 29 H 0.182 0.818 30 H 0.173 0.827 31 H 0.134 0.866 32 H 0.279 0.721 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.842 10.958 3.524 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.096 4.096 4 C -0.130 4.130 5 C -0.088 4.088 6 C -0.733 4.733 7 S 2.634 3.366 8 O -0.951 6.951 9 O -1.032 7.032 10 N -0.617 5.617 11 C -0.382 4.382 12 H 0.108 0.892 13 C -0.206 4.206 14 N -0.450 5.450 15 Si 0.797 3.203 16 H -0.177 1.177 17 H -0.208 1.208 18 H -0.185 1.185 19 C -0.052 4.052 20 C -0.190 4.190 21 C -0.223 4.223 22 C -0.040 4.040 23 C 0.340 3.660 24 O -0.355 6.355 25 O -0.319 6.319 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.072 0.928 29 H 0.199 0.801 30 H 0.191 0.809 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.991 11.094 2.763 12.908 hybrid contribution -0.799 -0.939 -0.298 1.268 sum -6.790 10.155 2.465 12.462 Atomic orbital electron populations 1.20962 0.88308 1.04261 1.03821 1.20443 0.97928 0.91383 0.98500 1.21629 0.94195 0.97935 0.95840 1.21874 0.94988 0.98378 0.97731 1.21093 1.00519 0.91643 0.95534 1.32596 1.04946 1.24785 1.10943 1.11811 0.74316 0.73098 0.77404 1.93431 1.77908 1.64917 1.58822 1.93212 1.36248 1.85515 1.88223 1.52386 1.37200 1.46426 1.25650 1.19271 1.01580 1.02347 1.15035 0.89159 1.26608 1.01064 0.97333 0.95563 1.69873 1.32229 1.22215 1.20691 0.85389 0.78614 0.77544 0.78740 1.17711 1.20849 1.18504 1.21595 0.93999 1.07056 0.82580 1.23133 1.03599 0.93832 0.98441 1.23321 1.00950 0.97233 1.00819 1.18673 0.91743 0.91691 1.01881 1.20829 0.78678 0.84728 0.81719 1.90868 1.49453 1.62519 1.32685 1.84616 1.71301 1.40807 1.35173 0.89562 0.87171 0.92824 0.80099 0.80940 0.84849 0.91119 0.86948 0.88929 0.86756 0.86546 0.89912 0.73304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.62 71.24 0.69 -2.10 16 2 C -0.08 -2.56 5.91 -19.60 -0.12 -2.68 16 3 C -0.08 -1.91 9.69 22.23 0.22 -1.69 16 4 C -0.11 -2.98 10.04 22.33 0.22 -2.75 16 5 C -0.07 -2.58 9.54 22.23 0.21 -2.36 16 6 C -0.65 -29.44 5.94 22.53 0.13 -29.30 16 7 S 2.53 135.31 4.91 -56.49 -0.28 135.03 16 8 O -0.96 -56.67 12.23 -122.88 -1.50 -58.17 16 9 O -1.04 -58.88 15.74 -128.00 -2.01 -60.90 16 10 N -0.80 -40.22 3.02 -322.96 -0.98 -41.20 16 11 C -0.23 -11.84 3.93 84.04 0.33 -11.51 16 12 H 0.09 4.56 6.74 -2.91 -0.02 4.54 16 13 C 0.01 0.42 4.18 84.86 0.35 0.78 16 14 N -0.81 -45.86 11.15 21.65 0.24 -45.62 16 15 Si 0.97 40.86 27.34 68.60 1.88 42.74 16 16 H -0.25 -9.63 5.34 99.48 0.53 -9.10 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 19 C 0.06 2.43 6.41 44.99 0.29 2.72 16 20 C -0.15 -5.51 9.85 30.59 0.30 -5.21 16 21 C -0.18 -6.44 10.23 30.59 0.31 -6.13 16 22 C -0.04 -1.57 5.75 -20.10 -0.12 -1.69 16 23 C 0.50 22.15 3.42 70.33 0.24 22.39 16 24 O -0.47 -21.48 12.15 19.92 0.24 -21.24 16 25 O -0.51 -21.82 12.76 -52.11 -0.67 -22.49 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 28 H 0.05 1.43 7.08 -2.39 -0.02 1.42 16 29 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.13 4.96 7.33 -2.91 -0.02 4.94 16 32 H 0.28 14.97 8.32 -92.71 -0.77 14.20 16 33 H 0.11 4.93 7.34 -2.39 -0.02 4.91 16 34 H 0.09 3.68 7.12 -2.39 -0.02 3.66 16 35 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.41 15.46 6.27 -74.06 -0.46 14.99 16 Total: -1.00 -74.21 320.37 0.46 -73.74 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: 0.47 Total: 37.64 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.07 Total: -39.53 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -0.73 Total: -86.82 kcal Atomic # 8 Polarization: -158.86 SS G_CDS: -3.94 Total: -162.80 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.74 kcal Atomic # 16 Polarization: 135.31 SS G_CDS: -0.28 Total: 135.03 kcal Total: -74.21 0.46 -73.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833753588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.588 kcal (2) G-P(sol) polarization free energy of solvation -74.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds