Wall clock time and date at job start Tue Mar 31 2020 13:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46773 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47087 * 300.00570 * 3 2 1 6 6 H 1.48500 * 109.46916 * 60.00285 * 3 2 1 7 7 C 1.38745 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00152 * 180.02562 * 7 2 1 9 9 O 1.34925 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.34305 * 117.00121 * 180.02562 * 9 7 2 11 11 O 1.21211 * 120.00648 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99866 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47240 * 180.02562 * 12 10 9 14 14 N 1.46501 * 109.47487 * 179.97438 * 13 12 10 15 15 S 1.65596 * 119.99996 * 164.99585 * 14 13 12 16 16 O 1.42107 * 106.39813 * 178.54386 * 15 14 13 17 17 O 1.42095 * 106.40610 * 311.46272 * 15 14 13 18 18 C 1.76201 * 107.21700 * 65.00950 * 15 14 13 19 19 C 1.32565 * 120.00231 * 117.79149 * 18 15 14 20 20 C 1.47812 * 119.99991 * 17.60133 * 19 18 15 21 21 C 1.39538 * 120.13688 * 225.41256 * 20 19 18 22 22 C 1.37976 * 119.84931 * 179.67735 * 21 20 19 23 23 C 1.38344 * 120.14456 * 0.61391 * 22 21 20 24 24 C 1.38340 * 120.28383 * 359.67693 * 23 22 21 25 25 C 1.37971 * 120.14499 * 0.02562 * 24 23 22 26 26 H 0.97006 * 120.00508 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47513 * 59.99909 * 12 10 9 28 28 H 1.09007 * 109.47176 * 299.99698 * 12 10 9 29 29 H 1.09005 * 109.47463 * 59.99761 * 13 12 10 30 30 H 1.09002 * 109.47268 * 300.00080 * 13 12 10 31 31 H 0.96999 * 119.99522 * 345.00811 * 14 13 12 32 32 H 1.08003 * 119.99898 * 297.79003 * 18 15 14 33 33 H 1.08002 * 119.99705 * 197.59413 * 19 18 15 34 34 H 1.07999 * 120.07132 * 359.96838 * 21 20 19 35 35 H 1.08006 * 119.92588 * 180.31747 * 22 21 20 36 36 H 1.08002 * 119.85467 * 179.70205 * 23 22 21 37 37 H 1.08002 * 119.92679 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.07434 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7083 1.3464 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8896 2.3964 1.2126 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4964 -0.0005 11 8 3.2755 -3.4331 -0.0001 12 6 1.3809 -4.8392 -0.0011 13 6 2.4346 -5.9485 -0.0004 14 7 1.7696 -7.2539 -0.0003 15 16 2.6282 -8.6205 -0.3708 16 8 1.7219 -9.7085 -0.2510 17 8 3.3444 -8.3334 -1.5640 18 6 3.8354 -8.8371 0.8943 19 6 3.8072 -9.9194 1.6592 20 6 3.0415 -11.1085 1.2293 21 6 2.2149 -11.7745 2.1349 22 6 1.4977 -12.8798 1.7255 23 6 1.6066 -13.3356 0.4239 24 6 2.4290 -12.6833 -0.4772 25 6 3.1469 -11.5732 -0.0821 26 1 -0.4851 0.8401 0.0004 27 1 0.7585 -4.9296 -0.8913 28 1 0.7578 -4.9300 0.8887 29 1 3.0568 -5.8581 0.8901 30 1 3.0581 -5.8580 -0.8898 31 1 0.8263 -7.3176 0.2166 32 1 4.5984 -8.0880 1.0465 33 1 4.3438 -9.9324 2.5964 34 1 2.1331 -11.4227 3.1528 35 1 0.8536 -13.3932 2.4241 36 1 1.0467 -14.2041 0.1097 37 1 2.5094 -13.0438 -1.4921 38 1 3.7883 -11.0646 -0.7866 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834641080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:01 Heat of formation + Delta-G solvation = -96.670581 kcal Electronic energy + Delta-G solvation = -24228.010933 eV Core-core repulsion = 20357.073841 eV Total energy + Delta-G solvation = -3870.937092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.58041 -39.09791 -37.15424 -36.10411 -35.88052 -34.86976 -34.70334 -32.18115 -31.18375 -30.19680 -29.79132 -25.59895 -24.01529 -23.45229 -22.76091 -21.23457 -20.03381 -19.16860 -18.09206 -17.77505 -17.11256 -16.71715 -16.45420 -15.80643 -15.67475 -15.28968 -15.08429 -14.66116 -14.48796 -14.36249 -14.16950 -13.74222 -13.67374 -13.44598 -13.05887 -12.63748 -12.03370 -12.00332 -11.87292 -11.76219 -11.63562 -11.57621 -11.52137 -11.43718 -11.14803 -10.97814 -10.47606 -10.42707 -10.41945 -9.83582 -9.55243 -9.10584 -9.05205 -8.69594 -8.61330 -6.44242 -4.12274 0.16488 0.61572 1.24568 1.58262 2.93024 3.07564 3.18225 3.25665 3.47565 3.56346 3.69162 3.92483 4.17755 4.36889 4.59305 4.62468 4.67150 4.84093 4.88386 4.98881 5.07550 5.19257 5.27936 5.31718 5.48721 5.57693 5.66948 5.69387 5.77299 5.81767 6.07169 6.19255 6.21166 6.21562 6.29503 6.67433 6.74925 6.90018 7.37326 7.91839 8.66045 9.04705 9.80209 10.73692 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.002218 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.009972 B =12621.555296 C =12704.348713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.382 4.382 8 H 0.097 0.903 9 O -0.213 6.213 10 C 0.399 3.601 11 O -0.557 6.557 12 C -0.110 4.110 13 C 0.128 3.872 14 N -1.115 6.115 15 S 2.679 3.321 16 O -0.948 6.948 17 O -0.962 6.962 18 C -0.752 4.752 19 C 0.062 3.938 20 C -0.097 4.097 21 C -0.086 4.086 22 C -0.126 4.126 23 C -0.101 4.101 24 C -0.115 4.115 25 C -0.065 4.065 26 H 0.269 0.731 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.419 0.581 32 H 0.167 0.833 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -24.764 4.226 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.458 4.458 8 H 0.115 0.885 9 O -0.120 6.120 10 C 0.245 3.755 11 O -0.455 6.455 12 C -0.150 4.150 13 C 0.003 3.997 14 N -0.876 5.876 15 S 2.769 3.231 16 O -0.938 6.938 17 O -0.952 6.952 18 C -0.858 4.858 19 C 0.042 3.958 20 C -0.098 4.098 21 C -0.104 4.104 22 C -0.144 4.144 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.083 4.083 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.254 0.746 32 H 0.185 0.815 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.776 -25.054 3.465 25.444 hybrid contribution 0.360 1.240 0.868 1.556 sum 3.136 -23.813 4.333 24.406 Atomic orbital electron populations 1.69999 1.06020 1.27646 1.46512 1.25353 0.95832 0.98932 0.96164 0.85605 0.79468 0.80000 0.78122 1.18923 1.20149 1.20186 1.21291 0.92443 0.79754 1.52351 0.88511 1.83867 1.39389 1.13407 1.75332 1.22875 0.86608 0.87114 0.78912 1.90573 1.15620 1.88149 1.51166 1.21168 0.98573 0.89769 1.05467 1.21111 0.94737 0.80119 1.03782 1.55447 1.22330 1.21154 1.88690 1.02266 0.74321 0.72161 0.74391 1.93751 1.64018 1.49489 1.86574 1.93608 1.73819 1.84328 1.43403 1.33825 1.19797 1.08553 1.23600 1.21849 0.89002 0.89538 0.95389 1.19095 0.99672 0.96247 0.94741 1.21072 0.95721 0.94938 0.98685 1.21018 0.99941 0.97023 0.96427 1.21221 0.97606 0.99439 0.93635 1.20933 0.96876 0.95872 0.99647 1.21084 0.97629 0.96081 0.93545 0.92088 0.88112 0.88323 0.90758 0.89131 0.74635 0.81499 0.84724 0.85789 0.85875 0.86005 0.85721 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 2 C 0.04 1.15 5.49 -17.53 -0.10 1.05 16 3 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.38 -11.15 9.64 30.92 0.30 -10.85 16 8 H 0.10 2.84 6.86 -52.48 -0.36 2.48 16 9 O -0.21 -5.96 9.75 -20.70 -0.20 -6.16 16 10 C 0.40 9.40 7.91 36.01 0.28 9.68 16 11 O -0.56 -14.30 15.22 -19.05 -0.29 -14.59 16 12 C -0.11 -1.81 5.95 -27.88 -0.17 -1.98 16 13 C 0.13 1.85 5.51 -4.04 -0.02 1.83 16 14 N -1.12 -12.90 6.00 -10.61 -0.06 -12.97 16 15 S 2.68 32.84 4.87 -107.50 -0.52 32.32 16 16 O -0.95 -12.29 13.07 -57.17 -0.75 -13.04 16 17 O -0.96 -15.30 17.49 -57.17 -1.00 -16.30 16 18 C -0.75 -7.79 10.08 28.82 0.29 -7.50 16 19 C 0.06 0.57 9.72 -37.57 -0.37 0.20 16 20 C -0.10 -1.00 3.92 -105.01 -0.41 -1.41 16 21 C -0.09 -0.78 9.79 -39.19 -0.38 -1.16 16 22 C -0.13 -1.06 10.03 -39.64 -0.40 -1.46 16 23 C -0.10 -0.87 10.04 -39.50 -0.40 -1.27 16 24 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 16 25 C -0.06 -0.71 6.51 -39.20 -0.26 -0.96 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 27 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.10 1.39 8.14 -51.92 -0.42 0.97 16 29 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.09 1.43 7.71 -51.93 -0.40 1.03 16 31 H 0.42 3.91 8.65 -34.47 -0.30 3.61 16 32 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.11 1.18 7.41 -52.49 -0.39 0.79 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -36.93 347.22 -8.26 -45.19 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.39 Total: 3.93 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -2.02 Total: -15.34 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.69 Total: -37.30 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -2.24 Total: -50.10 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 32.84 SS G_CDS: -0.52 Total: 32.32 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.93 -8.26 -45.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834641080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.482 kcal (2) G-P(sol) polarization free energy of solvation -36.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds