Wall clock time and date at job start Tue Mar 31 2020 13:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46773 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47087 * 300.00570 * 3 2 1 6 6 H 1.48500 * 109.46916 * 60.00285 * 3 2 1 7 7 C 1.38745 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00152 * 180.02562 * 7 2 1 9 9 O 1.34925 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.34305 * 117.00121 * 180.02562 * 9 7 2 11 11 O 1.21211 * 120.00648 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99866 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47240 * 180.02562 * 12 10 9 14 14 N 1.46501 * 109.47487 * 179.97438 * 13 12 10 15 15 S 1.65596 * 119.99996 * 164.99585 * 14 13 12 16 16 O 1.42107 * 106.39813 * 178.54386 * 15 14 13 17 17 O 1.42095 * 106.40610 * 311.46272 * 15 14 13 18 18 C 1.76201 * 107.21700 * 65.00950 * 15 14 13 19 19 C 1.32565 * 120.00231 * 117.79149 * 18 15 14 20 20 C 1.47812 * 119.99991 * 17.60133 * 19 18 15 21 21 C 1.39538 * 120.13688 * 225.41256 * 20 19 18 22 22 C 1.37976 * 119.84931 * 179.67735 * 21 20 19 23 23 C 1.38344 * 120.14456 * 0.61391 * 22 21 20 24 24 C 1.38340 * 120.28383 * 359.67693 * 23 22 21 25 25 C 1.37971 * 120.14499 * 0.02562 * 24 23 22 26 26 H 0.97006 * 120.00508 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47513 * 59.99909 * 12 10 9 28 28 H 1.09007 * 109.47176 * 299.99698 * 12 10 9 29 29 H 1.09005 * 109.47463 * 59.99761 * 13 12 10 30 30 H 1.09002 * 109.47268 * 300.00080 * 13 12 10 31 31 H 0.96999 * 119.99522 * 345.00811 * 14 13 12 32 32 H 1.08003 * 119.99898 * 297.79003 * 18 15 14 33 33 H 1.08002 * 119.99705 * 197.59413 * 19 18 15 34 34 H 1.07999 * 120.07132 * 359.96838 * 21 20 19 35 35 H 1.08006 * 119.92588 * 180.31747 * 22 21 20 36 36 H 1.08002 * 119.85467 * 179.70205 * 23 22 21 37 37 H 1.08002 * 119.92679 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.07434 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7083 1.3464 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8896 2.3964 1.2126 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4964 -0.0005 11 8 3.2755 -3.4331 -0.0001 12 6 1.3809 -4.8392 -0.0011 13 6 2.4346 -5.9485 -0.0004 14 7 1.7696 -7.2539 -0.0003 15 16 2.6282 -8.6205 -0.3708 16 8 1.7219 -9.7085 -0.2510 17 8 3.3444 -8.3334 -1.5640 18 6 3.8354 -8.8371 0.8943 19 6 3.8072 -9.9194 1.6592 20 6 3.0415 -11.1085 1.2293 21 6 2.2149 -11.7745 2.1349 22 6 1.4977 -12.8798 1.7255 23 6 1.6066 -13.3356 0.4239 24 6 2.4290 -12.6833 -0.4772 25 6 3.1469 -11.5732 -0.0821 26 1 -0.4851 0.8401 0.0004 27 1 0.7585 -4.9296 -0.8913 28 1 0.7578 -4.9300 0.8887 29 1 3.0568 -5.8581 0.8901 30 1 3.0581 -5.8580 -0.8898 31 1 0.8263 -7.3176 0.2166 32 1 4.5984 -8.0880 1.0465 33 1 4.3438 -9.9324 2.5964 34 1 2.1331 -11.4227 3.1528 35 1 0.8536 -13.3932 2.4241 36 1 1.0467 -14.2041 0.1097 37 1 2.5094 -13.0438 -1.4921 38 1 3.7883 -11.0646 -0.7866 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834641080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:00 Heat of formation + Delta-G solvation = -122.776538 kcal Electronic energy + Delta-G solvation = -24229.142973 eV Core-core repulsion = 20357.073841 eV Total energy + Delta-G solvation = -3872.069131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.04589 -40.26843 -38.19326 -37.68252 -36.92292 -36.47090 -35.44042 -34.29679 -31.86971 -31.52130 -30.51566 -27.60176 -25.01258 -24.65871 -23.43863 -22.08159 -21.65456 -20.20741 -19.87311 -19.03195 -18.41998 -17.97790 -17.33559 -17.09342 -16.94570 -16.38644 -16.25290 -16.16540 -15.85316 -15.46333 -15.32237 -15.04860 -14.47299 -14.32164 -14.15255 -13.81885 -13.60593 -13.32893 -13.22927 -13.07615 -12.91166 -12.72758 -12.65294 -12.37777 -12.30992 -12.16379 -12.15094 -11.95935 -11.76990 -11.24052 -11.06884 -10.69922 -10.57376 -9.74683 -9.41668 -8.53732 -6.33184 -0.71264 -0.19813 0.55539 0.86850 1.30304 1.35766 1.53836 1.64661 1.90776 2.17472 2.71639 2.83614 2.92819 2.98036 3.43481 3.50950 3.63982 3.92830 4.02499 4.05734 4.26575 4.32743 4.39766 4.44712 4.56418 4.60069 4.78952 4.81065 4.82985 4.98097 5.00685 5.08409 5.14634 5.19802 5.50102 5.54557 5.62613 5.83868 6.02776 6.10427 6.67168 6.92131 7.76101 8.67067 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.002218 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.009972 B =12621.555296 C =12704.348713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.005 4.005 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.419 4.419 8 H 0.083 0.917 9 O -0.244 6.244 10 C 0.398 3.602 11 O -0.582 6.582 12 C -0.101 4.101 13 C 0.134 3.866 14 N -1.105 6.105 15 S 2.688 3.312 16 O -0.956 6.956 17 O -1.006 7.006 18 C -0.764 4.764 19 C 0.080 3.920 20 C -0.118 4.118 21 C -0.092 4.092 22 C -0.132 4.132 23 C -0.106 4.106 24 C -0.133 4.133 25 C -0.091 4.091 26 H 0.278 0.722 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.430 0.570 32 H 0.176 0.824 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 -25.576 5.771 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.206 4.206 3 Si 0.836 3.164 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.495 4.495 8 H 0.101 0.899 9 O -0.153 6.153 10 C 0.245 3.755 11 O -0.480 6.480 12 C -0.140 4.140 13 C 0.008 3.992 14 N -0.867 5.867 15 S 2.782 3.218 16 O -0.946 6.946 17 O -0.996 6.996 18 C -0.874 4.874 19 C 0.060 3.940 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.150 4.150 23 C -0.124 4.124 24 C -0.151 4.151 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.268 0.732 32 H 0.194 0.806 33 H 0.187 0.813 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.153 0.847 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.408 -25.893 4.987 26.479 hybrid contribution 0.457 1.262 0.421 1.407 sum 2.866 -24.631 5.408 25.380 Atomic orbital electron populations 1.70074 1.07595 1.29294 1.47063 1.26519 0.96886 1.02361 0.94785 0.84576 0.77813 0.74869 0.79166 1.18866 1.18651 1.18424 1.21455 0.92193 0.81163 1.54704 0.89921 1.83891 1.40370 1.14255 1.76752 1.24232 0.86661 0.88287 0.76308 1.90545 1.17094 1.88710 1.51636 1.21293 0.99019 0.85843 1.07809 1.20929 0.94220 0.80580 1.03508 1.55189 1.23060 1.19755 1.88722 1.01700 0.74279 0.71741 0.74126 1.93740 1.64624 1.49432 1.86794 1.93553 1.74672 1.84903 1.46458 1.33484 1.20311 1.10067 1.23507 1.22202 0.87675 0.88259 0.95838 1.19333 1.00660 0.97031 0.94832 1.21448 0.95053 0.94851 0.99623 1.21431 0.99842 0.96865 0.96818 1.21587 0.97172 0.99947 0.93725 1.21227 0.97207 0.95976 1.00717 1.21256 0.98522 0.97072 0.94150 0.91224 0.86320 0.85179 0.89803 0.90956 0.73234 0.80592 0.81342 0.83341 0.83260 0.83672 0.84650 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.73 13.67 21.62 0.30 -52.43 16 2 C -0.01 -0.30 5.49 84.87 0.47 0.17 16 3 Si 1.02 43.03 29.55 68.60 2.03 45.06 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.42 -25.07 9.64 67.94 0.66 -24.41 16 8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 16 9 O -0.24 -13.98 9.75 14.88 0.15 -13.83 16 10 C 0.40 18.92 7.91 71.24 0.56 19.48 16 11 O -0.58 -30.41 15.22 20.77 0.32 -30.10 16 12 C -0.10 -3.19 5.95 29.85 0.18 -3.02 16 13 C 0.13 3.77 5.51 86.38 0.48 4.25 16 14 N -1.11 -24.33 6.00 -187.49 -1.12 -25.45 16 15 S 2.69 65.17 4.87 -56.49 -0.28 64.90 16 16 O -0.96 -24.28 13.07 -128.00 -1.67 -25.95 16 17 O -1.01 -32.93 17.49 -128.00 -2.24 -35.17 16 18 C -0.76 -14.95 10.08 66.67 0.67 -14.28 16 19 C 0.08 1.30 9.72 23.65 0.23 1.53 16 20 C -0.12 -2.25 3.92 -20.12 -0.08 -2.33 16 21 C -0.09 -1.43 9.79 22.52 0.22 -1.21 16 22 C -0.13 -1.89 10.03 22.23 0.22 -1.67 16 23 C -0.11 -1.65 10.04 22.32 0.22 -1.43 16 24 C -0.13 -2.53 10.03 22.23 0.22 -2.31 16 25 C -0.09 -1.97 6.51 22.52 0.15 -1.83 16 26 H 0.28 14.71 8.31 -92.70 -0.77 13.94 16 27 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 28 H 0.13 3.36 8.14 -2.38 -0.02 3.34 16 29 H 0.08 2.21 8.10 -2.38 -0.02 2.19 16 30 H 0.07 2.32 7.71 -2.39 -0.02 2.30 16 31 H 0.43 7.27 8.65 -96.75 -0.84 6.44 16 32 H 0.18 3.11 8.06 -2.91 -0.02 3.08 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 36 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.11 2.30 7.41 -2.91 -0.02 2.28 16 Total: -1.00 -81.89 347.22 1.93 -79.97 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.25 Total: 20.05 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 4.20 Total: -27.05 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -0.83 Total: -77.88 kcal Atomic # 8 Polarization: -101.60 SS G_CDS: -3.45 Total: -105.05 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 65.17 SS G_CDS: -0.28 Total: 64.90 kcal Total: -81.89 1.93 -79.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834641080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.808 kcal (2) G-P(sol) polarization free energy of solvation -81.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds