Wall clock time and date at job start Tue Mar 31 2020 13:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00124 * 2 1 4 4 H 1.48505 * 109.46913 * 269.99601 * 3 2 1 5 5 H 1.48499 * 109.47114 * 29.99529 * 3 2 1 6 6 H 1.48495 * 109.47484 * 149.99742 * 3 2 1 7 7 C 1.37875 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47430 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47285 * 180.02562 * 10 9 7 12 12 C 1.35312 * 125.87246 * 125.29516 * 11 10 9 13 13 C 1.35351 * 106.18015 * 180.18624 * 12 11 10 14 14 C 1.50691 * 126.75334 * 179.85333 * 13 12 11 15 15 H 1.08998 * 109.47814 * 4.70914 * 14 13 12 16 16 O 1.42903 * 109.47144 * 244.71070 * 14 13 12 17 17 C 1.50695 * 109.47490 * 124.71426 * 14 13 12 18 18 C 1.38226 * 120.00428 * 94.95268 * 17 14 13 19 19 C 1.38205 * 120.04232 * 180.02562 * 18 17 14 20 20 C 1.38380 * 120.03449 * 0.03830 * 19 18 17 21 21 Cl 1.73600 * 119.99869 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.00416 * 359.97438 * 20 19 18 23 23 C 1.38447 * 119.99812 * 275.00292 * 17 14 13 24 24 F 1.35097 * 120.01848 * 0.24595 * 23 17 14 25 25 N 1.33775 * 106.49208 * 359.58979 * 13 12 11 26 26 N 1.28635 * 108.88790 * 0.26311 * 25 13 12 27 27 H 0.97002 * 119.99615 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46506 * 59.99798 * 9 7 2 29 29 H 1.09003 * 109.47099 * 300.00330 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00005 * 10 9 7 31 31 H 1.09003 * 109.47316 * 300.00279 * 10 9 7 32 32 H 1.08006 * 126.91087 * 0.03838 * 12 11 10 33 33 H 0.96698 * 114.00373 * 300.00230 * 16 14 13 34 34 H 1.08007 * 119.97941 * 0.02562 * 18 17 14 35 35 H 1.07997 * 119.97812 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.02203 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 1.6652 -5.9340 -0.8952 13 6 0.7967 -6.9042 -0.5260 14 6 0.5824 -8.2302 -1.2091 15 1 1.3016 -8.3415 -2.0205 16 8 -0.7441 -8.2849 -1.7377 17 6 0.7724 -9.3450 -0.2130 18 6 -0.3205 -9.8791 0.4434 19 6 -0.1471 -10.9011 1.3575 20 6 1.1211 -11.3903 1.6171 21 17 1.3377 -12.6745 2.7650 22 6 2.2156 -10.8570 0.9615 23 6 2.0418 -9.8334 0.0454 24 9 3.1109 -9.3076 -0.5915 25 7 0.1702 -6.4568 0.5680 26 7 0.6169 -5.2848 0.8537 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8718 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8894 32 1 2.3420 -5.9552 -1.7367 33 1 -1.4377 -8.1924 -1.0702 34 1 -1.3106 -9.4975 0.2419 35 1 -1.0017 -11.3179 1.8695 36 1 3.2055 -11.2389 1.1637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849141167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:46 Heat of formation + Delta-G solvation = -6.715793 kcal Electronic energy + Delta-G solvation = -24024.762700 eV Core-core repulsion = 20064.515080 eV Total energy + Delta-G solvation = -3960.247620 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.05489 -44.25894 -40.54939 -38.36154 -37.29794 -36.61871 -34.77128 -33.11980 -31.97915 -31.77884 -31.36785 -27.49219 -27.24500 -24.34390 -24.04549 -23.43990 -22.76580 -21.49516 -19.24815 -18.98314 -18.30040 -17.84952 -17.69705 -17.29913 -16.86730 -16.63575 -16.46285 -16.01505 -15.67822 -15.32460 -15.21354 -14.96919 -14.51958 -14.35274 -14.27086 -13.73314 -13.61902 -13.24702 -12.91050 -12.78658 -12.68120 -12.58348 -12.31313 -12.15923 -12.06193 -12.04998 -11.83365 -11.47774 -11.43684 -10.92255 -10.63758 -10.30801 -10.05768 -9.69417 -8.27339 -6.41524 -0.18125 0.02166 0.68499 0.94640 1.40938 1.41513 1.43255 1.52362 1.56179 2.31120 2.38810 3.08258 3.10707 3.21888 3.26556 3.50819 3.60053 3.78576 3.91302 3.96388 4.04687 4.17488 4.23960 4.42745 4.48750 4.54626 4.73647 4.85905 4.87946 5.02359 5.04279 5.19202 5.28454 5.43671 5.55309 5.59805 5.75630 6.03698 6.51326 6.74886 7.29820 7.51117 8.85191 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024747 B = 0.002369 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.193200 B =11814.386069 C =11970.425049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.024 3.976 10 C 0.124 3.876 11 N -0.278 5.278 12 C -0.025 4.025 13 C -0.078 4.078 14 C 0.253 3.747 15 H 0.142 0.858 16 O -0.548 6.548 17 C -0.146 4.146 18 C -0.061 4.061 19 C -0.114 4.114 20 C -0.014 4.014 21 Cl -0.053 7.053 22 C -0.152 4.152 23 C 0.111 3.889 24 F -0.134 7.134 25 N -0.282 5.282 26 N -0.121 5.121 27 H 0.265 0.735 28 H -0.008 1.008 29 H -0.003 1.003 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.229 0.771 33 H 0.390 0.610 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -24.840 -1.164 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.581 4.581 8 H 0.099 0.901 9 C -0.014 4.014 10 C 0.005 3.995 11 N -0.070 5.070 12 C -0.178 4.178 13 C -0.218 4.218 14 C 0.192 3.808 15 H 0.160 0.840 16 O -0.354 6.354 17 C -0.148 4.148 18 C -0.079 4.079 19 C -0.132 4.132 20 C -0.041 4.041 21 Cl -0.024 7.024 22 C -0.171 4.171 23 C 0.091 3.909 24 F -0.112 7.112 25 N -0.148 5.148 26 N -0.100 5.100 27 H 0.074 0.926 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.119 0.881 31 H 0.149 0.851 32 H 0.245 0.755 33 H 0.240 0.760 34 H 0.178 0.822 35 H 0.181 0.819 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.848 -24.450 -0.353 24.753 hybrid contribution 0.650 1.039 -0.204 1.242 sum 4.498 -23.411 -0.557 23.845 Atomic orbital electron populations 1.70134 1.08206 1.28121 1.50759 1.26035 0.95672 1.03795 0.94284 0.85323 0.78637 0.77753 0.78589 1.19551 1.21381 1.18057 1.21450 0.94144 0.90750 1.51787 0.90141 1.19135 0.94192 0.92209 0.95835 1.22537 0.94241 0.76759 1.05964 1.47888 1.25683 1.15593 1.17869 1.24127 1.05336 0.88386 0.99907 1.22843 1.00539 1.00513 0.97901 1.18701 0.86659 0.82833 0.92653 0.84046 1.86598 1.14733 1.95194 1.38899 1.20610 0.92970 0.99643 1.01536 1.20990 0.99283 0.94318 0.93320 1.21357 0.96461 0.96939 0.98465 1.20743 0.94611 0.93685 0.95066 1.98392 1.97558 1.48291 1.58165 1.21078 1.00792 0.97621 0.97628 1.17306 0.83014 0.95380 0.95216 1.91506 1.54248 1.85388 1.80058 1.74885 1.22626 1.03303 1.14001 1.78325 1.05580 1.09372 1.16754 0.92637 0.98920 0.98427 0.88132 0.85116 0.75500 0.75965 0.82186 0.81861 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.54 -28.36 9.11 25.60 0.23 -28.13 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 9 C 0.02 1.21 5.10 29.85 0.15 1.36 16 10 C 0.12 4.50 6.39 86.38 0.55 5.05 16 11 N -0.28 -10.01 3.44 -347.74 -1.20 -11.20 16 12 C -0.02 -0.71 11.49 83.49 0.96 0.25 16 13 C -0.08 -2.25 6.08 41.59 0.25 -2.00 16 14 C 0.25 5.54 3.48 29.10 0.10 5.64 16 15 H 0.14 2.60 7.77 -2.39 -0.02 2.58 16 16 O -0.55 -11.90 12.98 -148.98 -1.93 -13.83 16 17 C -0.15 -2.99 5.05 -19.82 -0.10 -3.09 16 18 C -0.06 -1.05 9.30 22.26 0.21 -0.84 16 19 C -0.11 -1.77 9.83 22.30 0.22 -1.55 16 20 C -0.01 -0.24 6.32 22.32 0.14 -0.10 16 21 Cl -0.05 -0.82 28.96 -2.72 -0.08 -0.90 16 22 C -0.15 -2.76 9.81 22.34 0.22 -2.54 16 23 C 0.11 2.29 7.24 22.37 0.16 2.45 16 24 F -0.13 -2.87 16.57 44.97 0.75 -2.13 16 25 N -0.28 -10.13 12.40 -48.60 -0.60 -10.73 16 26 N -0.12 -4.99 12.91 37.02 0.48 -4.51 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.00 -0.15 8.12 -2.39 -0.02 -0.17 16 30 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.13 3.80 8.07 -2.39 -0.02 3.78 16 32 H 0.23 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.39 6.95 7.32 -74.06 -0.54 6.41 16 34 H 0.16 2.11 6.41 -2.91 -0.02 2.09 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -69.69 340.26 3.89 -65.80 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.60 Total: 11.97 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.56 Total: -22.98 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.04 Total: -81.90 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.93 Total: -13.83 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.75 Total: -2.13 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -69.69 3.89 -65.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849141167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.088 kcal (2) G-P(sol) polarization free energy of solvation -69.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds