Wall clock time and date at job start Tue Mar 31 2020 13:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99829 * 2 1 4 4 H 1.48494 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46885 * 299.99384 * 3 2 1 6 6 H 1.48503 * 109.47327 * 59.99360 * 3 2 1 7 7 C 1.37870 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99803 * 165.01130 * 7 2 1 9 9 C 1.50701 * 120.00361 * 345.01855 * 7 2 1 10 10 C 1.53006 * 115.54575 * 324.82040 * 9 7 2 11 11 O 1.45193 * 109.46977 * 306.32126 * 10 9 7 12 12 C 1.34712 * 117.00067 * 183.71404 * 11 10 9 13 13 O 1.21472 * 119.99790 * 4.89163 * 12 11 10 14 14 C 1.47724 * 120.00056 * 184.89006 * 12 11 10 15 15 C 1.39636 * 120.14741 * 174.82684 * 14 12 11 16 16 C 1.37938 * 119.84673 * 179.97438 * 15 14 12 17 17 C 1.38376 * 120.15343 * 359.97438 * 16 15 14 18 18 S 1.76193 * 119.84940 * 180.02562 * 17 16 15 19 19 N 1.65595 * 107.22253 * 90.00005 * 18 17 16 20 20 O 1.42103 * 106.39961 * 203.53888 * 18 17 16 21 21 O 1.42093 * 106.40392 * 336.45351 * 18 17 16 22 22 C 1.38368 * 120.29907 * 0.27498 * 17 16 15 23 23 C 1.37952 * 120.14894 * 359.44978 * 22 17 16 24 24 C 1.53003 * 117.50017 * 110.48602 * 9 7 2 25 25 C 1.52995 * 117.49938 * 179.14899 * 9 7 2 26 26 H 0.96998 * 119.99704 * 5.04227 * 1 2 3 27 27 H 1.08999 * 109.46585 * 186.32420 * 10 9 7 28 28 H 1.08996 * 109.46932 * 66.32341 * 10 9 7 29 29 H 1.08001 * 120.07569 * 359.94808 * 15 14 12 30 30 H 1.07997 * 119.92832 * 179.97438 * 16 15 14 31 31 H 0.96993 * 120.00748 * 149.99592 * 19 18 17 32 32 H 0.97001 * 119.99501 * 329.99944 * 19 18 17 33 33 H 1.08002 * 119.92742 * 179.72434 * 22 17 16 34 34 H 1.07998 * 120.07210 * 180.27964 * 23 22 17 35 35 H 1.08995 * 117.49766 * 215.00109 * 24 9 7 36 36 H 1.09001 * 117.49372 * 0.02879 * 24 9 7 37 37 H 1.09000 * 117.50440 * 359.97438 * 25 9 7 38 38 H 1.09007 * 117.49918 * 144.97325 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0570 -1.2099 -0.2414 9 6 1.2896 -2.4768 0.3385 10 6 0.1940 -2.3616 1.4003 11 8 0.7392 -1.7372 2.5924 12 6 -0.0804 -1.6305 3.6562 13 8 -1.1888 -2.1263 3.6211 14 6 0.3689 -0.9108 4.8655 15 6 -0.5139 -0.7047 5.9275 16 6 -0.0877 -0.0323 7.0540 17 6 1.2116 0.4371 7.1333 18 16 1.7478 1.2943 8.5762 19 7 2.3528 0.1624 9.6226 20 8 2.8478 2.1011 8.1781 21 8 0.5785 1.8216 9.1875 22 6 2.0901 0.2408 6.0825 23 6 1.6787 -0.4349 4.9524 24 6 1.0742 -3.4846 -0.7924 25 6 2.1051 -3.7708 0.3023 26 1 -0.4849 0.8368 -0.0738 27 1 -0.1774 -3.3559 1.6484 28 1 -0.6242 -1.7541 1.0137 29 1 -1.5283 -1.0705 5.8669 30 1 -0.7695 0.1282 7.8760 31 1 3.0607 0.4025 10.2406 32 1 1.9992 -0.7408 9.6174 33 1 3.1016 0.6136 6.1489 34 1 2.3668 -0.5914 4.1348 35 1 0.1520 -4.0656 -0.7799 36 1 1.4500 -3.2199 -1.7807 37 1 3.1588 -3.6944 0.0337 38 1 1.8615 -4.5399 1.0353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849653906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:16 Heat of formation + Delta-G solvation = -103.728517 kcal Electronic energy + Delta-G solvation = -24983.634767 eV Core-core repulsion = 21112.391620 eV Total energy + Delta-G solvation = -3871.243147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17593 -38.71702 -37.41012 -36.81867 -36.08331 -35.23838 -33.52955 -32.24421 -31.85017 -31.29180 -26.96803 -25.53734 -24.40368 -22.96379 -21.34987 -20.75082 -19.80527 -19.29359 -18.64898 -17.66710 -17.54356 -16.98879 -16.57978 -15.86155 -15.69721 -15.55182 -14.82541 -14.76522 -14.66411 -13.99285 -13.74889 -13.50356 -13.28136 -12.97696 -12.44790 -12.33814 -12.23492 -12.15933 -12.12620 -11.72406 -11.41779 -11.22674 -11.03370 -10.91488 -10.78914 -10.56186 -10.42393 -10.20891 -9.71430 -9.60184 -9.55510 -9.27133 -9.22946 -8.84439 -8.18994 -6.15995 -4.16490 0.00947 0.28215 1.10100 2.51147 2.90091 3.18366 3.21729 3.32348 3.34941 3.36248 3.66539 4.19412 4.30230 4.60840 4.65591 4.81987 5.04345 5.09781 5.23452 5.42612 5.44530 5.63370 5.67529 5.83438 5.87207 5.92730 6.08884 6.17512 6.34042 6.49988 6.54236 6.56606 6.67922 6.68581 6.87238 7.16558 7.25780 7.29085 7.80872 8.22967 8.35015 8.77891 9.42941 10.87448 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.003512 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.132175 B = 7969.670410 C = 8762.940553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.486 4.486 8 H 0.064 0.936 9 C 0.048 3.952 10 C 0.115 3.885 11 O -0.316 6.316 12 C 0.492 3.508 13 O -0.513 6.513 14 C -0.049 4.049 15 C -0.084 4.084 16 C -0.036 4.036 17 C -0.661 4.661 18 S 2.705 3.295 19 N -1.248 6.248 20 O -0.960 6.960 21 O -0.960 6.960 22 C -0.030 4.030 23 C -0.082 4.082 24 C -0.191 4.191 25 C -0.209 4.209 26 H 0.263 0.737 27 H 0.032 0.968 28 H 0.112 0.888 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.421 0.579 32 H 0.418 0.582 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -1.850 17.372 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.523 4.523 8 H 0.082 0.918 9 C 0.047 3.953 10 C 0.042 3.958 11 O -0.230 6.230 12 C 0.336 3.664 13 O -0.404 6.404 14 C -0.051 4.051 15 C -0.103 4.103 16 C -0.056 4.056 17 C -0.748 4.748 18 S 2.793 3.207 19 N -0.922 5.922 20 O -0.950 6.950 21 O -0.949 6.949 22 C -0.049 4.049 23 C -0.101 4.101 24 C -0.229 4.229 25 C -0.246 4.246 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.130 0.870 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.251 0.749 32 H 0.245 0.755 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.511 -0.824 17.380 17.580 hybrid contribution 0.265 -0.187 -0.499 0.595 sum 2.776 -1.012 16.881 17.138 Atomic orbital electron populations 1.69826 1.06201 1.27069 1.48690 1.24917 0.94685 0.99191 0.93836 0.86562 0.80452 0.83380 0.77862 1.19442 1.21011 1.20590 1.20429 0.95506 0.89131 1.47228 0.91767 1.18870 0.94409 0.89461 0.92555 1.22891 0.98601 0.94505 0.79770 1.86547 1.42609 1.72112 1.21709 1.21017 0.83359 0.77851 0.84172 1.90777 1.21289 1.45292 1.83082 1.19787 0.95016 0.97533 0.92739 1.21421 1.00357 0.96858 0.91685 1.20878 0.93438 0.92942 0.98295 1.30826 1.03626 1.19884 1.20464 1.01497 0.73636 0.72544 0.73032 1.53121 1.55344 1.28130 1.55621 1.93612 1.53283 1.65537 1.82544 1.93616 1.50269 1.75853 1.75209 1.20979 0.99282 0.93207 0.91412 1.21833 0.95516 0.94476 0.98288 1.22973 0.98715 1.05960 0.95232 1.22978 0.96758 1.02299 1.02592 0.92639 0.94935 0.87022 0.83459 0.83324 0.74926 0.75520 0.83246 0.82539 0.91453 0.89673 0.90215 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.88 10.96 55.43 0.61 -23.27 16 2 C 0.08 2.02 5.12 -17.82 -0.09 1.93 16 3 Si 0.89 20.50 29.57 -169.99 -5.03 15.48 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.49 -12.69 8.75 -34.44 -0.30 -12.99 16 8 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 9 C 0.05 1.14 2.10 -155.66 -0.33 0.81 16 10 C 0.11 2.72 4.66 37.16 0.17 2.89 16 11 O -0.32 -7.09 9.13 -40.52 -0.37 -7.46 16 12 C 0.49 9.95 7.88 34.61 0.27 10.22 16 13 O -0.51 -11.17 16.08 -19.24 -0.31 -11.48 16 14 C -0.05 -0.80 5.87 -104.98 -0.62 -1.42 16 15 C -0.08 -1.14 9.60 -39.17 -0.38 -1.51 16 16 C -0.04 -0.40 9.50 -39.64 -0.38 -0.78 16 17 C -0.66 -7.20 5.98 -39.48 -0.24 -7.43 16 18 S 2.71 25.42 6.28 -107.50 -0.67 24.74 16 19 N -1.25 -6.31 9.52 60.35 0.57 -5.73 16 20 O -0.96 -12.04 17.26 -57.18 -0.99 -13.03 16 21 O -0.96 -11.80 17.27 -57.18 -0.99 -12.79 16 22 C -0.03 -0.36 9.50 -39.64 -0.38 -0.73 16 23 C -0.08 -1.20 9.62 -39.17 -0.38 -1.58 16 24 C -0.19 -4.13 9.96 -26.69 -0.27 -4.39 16 25 C -0.21 -4.34 9.92 -26.69 -0.26 -4.60 16 26 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 27 H 0.03 0.72 7.95 -51.93 -0.41 0.31 16 28 H 0.11 2.93 6.12 -51.93 -0.32 2.61 16 29 H 0.15 1.86 7.66 -52.49 -0.40 1.46 16 30 H 0.15 1.26 7.60 -52.49 -0.40 0.86 16 31 H 0.42 1.42 8.96 -34.47 -0.31 1.11 16 32 H 0.42 1.23 8.96 -34.46 -0.31 0.92 16 33 H 0.15 1.50 7.60 -52.49 -0.40 1.10 16 34 H 0.16 2.32 7.62 -52.49 -0.40 1.92 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -33.99 347.09 -9.29 -43.28 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.19 Total: 4.61 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -3.16 Total: -19.58 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 1.18 Total: -29.00 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -2.65 Total: -44.75 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 25.42 SS G_CDS: -0.67 Total: 24.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.99 -9.29 -43.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849653906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.451 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds