Wall clock time and date at job start Tue Mar 31 2020 13:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99829 * 2 1 4 4 H 1.48494 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46885 * 299.99384 * 3 2 1 6 6 H 1.48503 * 109.47327 * 59.99360 * 3 2 1 7 7 C 1.37870 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99803 * 165.01130 * 7 2 1 9 9 C 1.50701 * 120.00361 * 345.01855 * 7 2 1 10 10 C 1.53006 * 115.54575 * 324.82040 * 9 7 2 11 11 O 1.45193 * 109.46977 * 306.32126 * 10 9 7 12 12 C 1.34712 * 117.00067 * 183.71404 * 11 10 9 13 13 O 1.21472 * 119.99790 * 4.89163 * 12 11 10 14 14 C 1.47724 * 120.00056 * 184.89006 * 12 11 10 15 15 C 1.39636 * 120.14741 * 174.82684 * 14 12 11 16 16 C 1.37938 * 119.84673 * 179.97438 * 15 14 12 17 17 C 1.38376 * 120.15343 * 359.97438 * 16 15 14 18 18 S 1.76193 * 119.84940 * 180.02562 * 17 16 15 19 19 N 1.65595 * 107.22253 * 90.00005 * 18 17 16 20 20 O 1.42103 * 106.39961 * 203.53888 * 18 17 16 21 21 O 1.42093 * 106.40392 * 336.45351 * 18 17 16 22 22 C 1.38368 * 120.29907 * 0.27498 * 17 16 15 23 23 C 1.37952 * 120.14894 * 359.44978 * 22 17 16 24 24 C 1.53003 * 117.50017 * 110.48602 * 9 7 2 25 25 C 1.52995 * 117.49938 * 179.14899 * 9 7 2 26 26 H 0.96998 * 119.99704 * 5.04227 * 1 2 3 27 27 H 1.08999 * 109.46585 * 186.32420 * 10 9 7 28 28 H 1.08996 * 109.46932 * 66.32341 * 10 9 7 29 29 H 1.08001 * 120.07569 * 359.94808 * 15 14 12 30 30 H 1.07997 * 119.92832 * 179.97438 * 16 15 14 31 31 H 0.96993 * 120.00748 * 149.99592 * 19 18 17 32 32 H 0.97001 * 119.99501 * 329.99944 * 19 18 17 33 33 H 1.08002 * 119.92742 * 179.72434 * 22 17 16 34 34 H 1.07998 * 120.07210 * 180.27964 * 23 22 17 35 35 H 1.08995 * 117.49766 * 215.00109 * 24 9 7 36 36 H 1.09001 * 117.49372 * 0.02879 * 24 9 7 37 37 H 1.09000 * 117.50440 * 359.97438 * 25 9 7 38 38 H 1.09007 * 117.49918 * 144.97325 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0570 -1.2099 -0.2414 9 6 1.2896 -2.4768 0.3385 10 6 0.1940 -2.3616 1.4003 11 8 0.7392 -1.7372 2.5924 12 6 -0.0804 -1.6305 3.6562 13 8 -1.1888 -2.1263 3.6211 14 6 0.3689 -0.9108 4.8655 15 6 -0.5139 -0.7047 5.9275 16 6 -0.0877 -0.0323 7.0540 17 6 1.2116 0.4371 7.1333 18 16 1.7478 1.2943 8.5762 19 7 2.3528 0.1624 9.6226 20 8 2.8478 2.1011 8.1781 21 8 0.5785 1.8216 9.1875 22 6 2.0901 0.2408 6.0825 23 6 1.6787 -0.4349 4.9524 24 6 1.0742 -3.4846 -0.7924 25 6 2.1051 -3.7708 0.3023 26 1 -0.4849 0.8368 -0.0738 27 1 -0.1774 -3.3559 1.6484 28 1 -0.6242 -1.7541 1.0137 29 1 -1.5283 -1.0705 5.8669 30 1 -0.7695 0.1282 7.8760 31 1 3.0607 0.4025 10.2406 32 1 1.9992 -0.7408 9.6174 33 1 3.1016 0.6136 6.1489 34 1 2.3668 -0.5914 4.1348 35 1 0.1520 -4.0656 -0.7799 36 1 1.4500 -3.2199 -1.7807 37 1 3.1588 -3.6944 0.0337 38 1 1.8615 -4.5399 1.0353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849653906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:15 Heat of formation + Delta-G solvation = -127.559440 kcal Electronic energy + Delta-G solvation = -24984.668154 eV Core-core repulsion = 21112.391620 eV Total energy + Delta-G solvation = -3872.276534 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62663 -39.97671 -38.54824 -38.29581 -36.97265 -36.94322 -34.21687 -34.05218 -32.96892 -32.31308 -28.67918 -27.47374 -25.70923 -23.99446 -23.03430 -22.13419 -21.15985 -20.60108 -19.52236 -18.87504 -18.66861 -18.34127 -17.73975 -17.36160 -17.14464 -16.60223 -16.53184 -15.93958 -15.79336 -15.57852 -15.07317 -14.72199 -14.50152 -14.34431 -13.80710 -13.77155 -13.53949 -13.25817 -13.22405 -13.13577 -12.89457 -12.82957 -12.44791 -12.33696 -12.22415 -12.15842 -11.83048 -11.50454 -11.36053 -11.29412 -11.14486 -10.73341 -10.66783 -10.27679 -10.08241 -8.13842 -6.19483 -0.99520 -0.61230 0.08835 1.18997 1.37035 1.43152 1.52003 1.68611 2.14102 2.35986 2.39085 2.71727 2.97401 3.29834 3.43857 3.62460 3.71923 3.77317 4.06289 4.14753 4.23623 4.32136 4.41064 4.52260 4.69783 4.74309 4.76013 4.81994 4.90224 4.94965 5.10682 5.16338 5.29832 5.34424 5.49960 5.52143 5.59501 5.78858 6.30760 6.37915 6.66498 6.80212 7.41692 8.88140 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.003512 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.132175 B = 7969.670410 C = 8762.940553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.009 3.991 10 C 0.124 3.876 11 O -0.329 6.329 12 C 0.488 3.512 13 O -0.538 6.538 14 C -0.079 4.079 15 C -0.085 4.085 16 C -0.026 4.026 17 C -0.650 4.650 18 S 2.738 3.262 19 N -1.228 6.228 20 O -0.988 6.988 21 O -0.984 6.984 22 C -0.028 4.028 23 C -0.092 4.092 24 C -0.186 4.186 25 C -0.184 4.184 26 H 0.260 0.740 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.181 0.819 31 H 0.432 0.568 32 H 0.431 0.569 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -1.743 19.596 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.009 3.991 10 C 0.051 3.949 11 O -0.243 6.243 12 C 0.334 3.666 13 O -0.431 6.431 14 C -0.080 4.080 15 C -0.104 4.104 16 C -0.045 4.045 17 C -0.736 4.736 18 S 2.824 3.176 19 N -0.909 5.909 20 O -0.978 6.978 21 O -0.973 6.973 22 C -0.047 4.047 23 C -0.111 4.111 24 C -0.224 4.224 25 C -0.221 4.221 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.170 0.830 30 H 0.199 0.801 31 H 0.266 0.734 32 H 0.261 0.739 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.644 -0.743 19.596 19.946 hybrid contribution -0.061 -0.249 -1.074 1.104 sum 3.583 -0.992 18.522 18.892 Atomic orbital electron populations 1.69961 1.07278 1.27290 1.49914 1.25512 0.95249 1.01753 0.93822 0.85756 0.79796 0.80173 0.77550 1.18569 1.20838 1.20828 1.20657 0.95342 0.90488 1.47040 0.92342 1.18992 0.95970 0.90073 0.94063 1.22586 0.97750 0.94152 0.80400 1.86545 1.43296 1.72450 1.21999 1.21759 0.82888 0.77380 0.84559 1.90740 1.22199 1.46596 1.83593 1.19700 0.96545 0.99668 0.92090 1.21562 1.00208 0.97022 0.91618 1.21230 0.93949 0.91299 0.98040 1.31168 1.03352 1.18295 1.20763 1.00473 0.72607 0.72182 0.72379 1.52668 1.55538 1.28148 1.54500 1.93579 1.54098 1.67021 1.83064 1.93597 1.51583 1.76768 1.75338 1.21198 1.00530 0.92361 0.90599 1.21801 0.94791 0.95333 0.99160 1.22974 0.99732 1.04883 0.94795 1.22994 0.96784 1.00401 1.01970 0.93007 0.94204 0.90197 0.83046 0.80135 0.73422 0.73860 0.81097 0.83592 0.90116 0.89976 0.89489 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.54 10.96 21.45 0.24 -50.31 16 2 C 0.04 1.98 5.12 84.65 0.43 2.42 16 3 Si 0.94 42.47 29.57 68.60 2.03 44.50 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.50 -26.32 8.75 25.60 0.22 -26.09 16 8 H 0.06 3.07 7.86 -2.91 -0.02 3.04 16 9 C 0.01 0.46 2.10 -52.93 -0.11 0.34 16 10 C 0.12 6.04 4.66 71.98 0.34 6.38 16 11 O -0.33 -15.25 9.13 -56.22 -0.51 -15.76 16 12 C 0.49 20.42 7.88 70.33 0.55 20.97 16 13 O -0.54 -24.29 16.08 19.93 0.32 -23.97 16 14 C -0.08 -2.58 5.87 -20.10 -0.12 -2.70 16 15 C -0.09 -2.22 9.60 22.54 0.22 -2.01 16 16 C -0.03 -0.52 9.50 22.23 0.21 -0.31 16 17 C -0.65 -12.51 5.98 22.33 0.13 -12.38 16 18 S 2.74 43.41 6.28 -56.49 -0.35 43.06 16 19 N -1.23 -8.05 9.52 37.02 0.35 -7.70 16 20 O -0.99 -22.26 17.26 -128.00 -2.21 -24.46 16 21 O -0.98 -21.27 17.27 -128.00 -2.21 -23.48 16 22 C -0.03 -0.63 9.50 22.23 0.21 -0.41 16 23 C -0.09 -2.67 9.62 22.54 0.22 -2.45 16 24 C -0.19 -7.94 9.96 30.62 0.30 -7.63 16 25 C -0.18 -7.43 9.92 30.62 0.30 -7.12 16 26 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 27 H 0.04 1.81 7.95 -2.39 -0.02 1.79 16 28 H 0.08 4.39 6.12 -2.39 -0.01 4.37 16 29 H 0.15 3.75 7.66 -2.91 -0.02 3.73 16 30 H 0.18 2.39 7.60 -2.91 -0.02 2.37 16 31 H 0.43 1.38 8.96 -96.75 -0.87 0.51 16 32 H 0.43 0.88 8.96 -96.75 -0.87 0.02 16 33 H 0.17 3.03 7.60 -2.91 -0.02 3.01 16 34 H 0.15 4.46 7.62 -2.91 -0.02 4.43 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 37 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -73.88 347.09 -0.04 -73.92 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -0.61 Total: 15.21 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 2.92 Total: -31.00 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.59 Total: -58.01 kcal Atomic # 8 Polarization: -83.06 SS G_CDS: -4.61 Total: -87.68 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 43.41 SS G_CDS: -0.35 Total: 43.06 kcal Total: -73.88 -0.04 -73.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849653906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.640 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds