Wall clock time and date at job start Tue Mar 31 2020 13:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46505 * 125.86763 * 180.17814 * 12 11 10 14 14 C 1.52998 * 109.46658 * 125.29510 * 13 12 11 15 15 H 1.08998 * 109.47400 * 305.00128 * 14 13 12 16 16 O 1.42906 * 109.47116 * 65.00600 * 14 13 12 17 17 C 1.50697 * 109.47123 * 184.99936 * 14 13 12 18 18 C 1.38252 * 119.98531 * 265.00369 * 17 14 13 19 19 C 1.38178 * 120.03868 * 179.97438 * 18 17 14 20 20 C 1.38488 * 120.00174 * 359.95595 * 19 18 17 21 21 F 1.35102 * 120.01674 * 180.02562 * 20 19 18 22 22 C 1.38416 * 119.96235 * 0.02562 * 20 19 18 23 23 C 1.38337 * 119.96159 * 359.77018 * 22 20 19 24 24 Cl 1.73603 * 119.99960 * 180.25654 * 23 22 20 25 25 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 26 26 N 1.28632 * 110.17939 * 359.72812 * 25 12 11 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 31 31 H 1.09001 * 109.47211 * 245.29764 * 13 12 11 32 32 H 1.08999 * 109.47008 * 5.29843 * 13 12 11 33 33 H 0.96699 * 114.00201 * 59.99092 * 16 14 13 34 34 H 1.07999 * 119.97714 * 359.97438 * 18 17 14 35 35 H 1.08003 * 119.99785 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.01430 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.8698 -3.1744 -0.8760 12 7 5.0376 -4.4573 -0.4799 13 6 5.8860 -5.4546 -1.1371 14 6 6.8674 -6.0394 -0.1195 15 1 7.4295 -5.2316 0.3491 16 8 6.1439 -6.7590 0.8810 17 6 7.8200 -6.9738 -0.8198 18 6 7.5578 -8.3308 -0.8528 19 6 8.4303 -9.1885 -1.4951 20 6 9.5676 -8.6888 -2.1072 21 9 10.4206 -9.5270 -2.7358 22 6 9.8300 -7.3301 -2.0746 23 6 8.9533 -6.4723 -1.4347 24 17 9.2779 -4.7673 -1.3990 25 7 4.3199 -4.6523 0.5707 26 7 3.6970 -3.5728 0.8891 27 1 -0.4849 0.8400 0.0004 28 1 3.8786 -0.6821 -0.8838 29 1 3.8711 -0.6785 0.8962 30 1 5.3283 -2.6931 -1.7272 31 1 5.2627 -6.2525 -1.5409 32 1 6.4413 -4.9820 -1.9473 33 1 5.6196 -7.4942 0.5349 34 1 6.6706 -8.7207 -0.3761 35 1 8.2250 -10.2485 -1.5201 36 1 10.7169 -6.9395 -2.5513 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881420856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:51 Heat of formation + Delta-G solvation = 27.724451 kcal Electronic energy + Delta-G solvation = -23913.662168 eV Core-core repulsion = 19954.907988 eV Total energy + Delta-G solvation = -3958.754179 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.54506 -42.59962 -40.37337 -37.59104 -37.06722 -34.40079 -33.12457 -31.90580 -31.65437 -31.23197 -28.83971 -27.77400 -24.85572 -23.78659 -23.10299 -22.07720 -21.29406 -20.08763 -18.74099 -17.76135 -17.53836 -16.75963 -16.42517 -16.39791 -16.22304 -15.61061 -15.33584 -14.94546 -14.54726 -14.30165 -14.06348 -13.97916 -13.90115 -13.31957 -13.12901 -12.65339 -12.32059 -12.17240 -12.03916 -11.95692 -11.85585 -11.44309 -11.15699 -10.75543 -10.62034 -10.53601 -10.08614 -9.83416 -9.69253 -9.47253 -9.30399 -9.20535 -8.51984 -8.23724 -5.98199 -3.95967 0.23214 0.36131 1.38128 2.15947 2.56358 2.74150 3.32630 3.41005 3.42223 3.44945 3.53345 3.81682 3.86608 3.98217 4.22289 4.31250 4.43682 4.47922 4.48483 4.74966 4.82084 5.05662 5.12354 5.20615 5.22433 5.34190 5.39513 5.60593 5.71878 5.95561 5.99408 6.20534 6.87520 7.08238 7.11707 7.21083 7.23539 7.75052 8.59571 9.09982 9.27914 9.61022 11.15349 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.002577 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.291098 B =10864.183491 C =11531.327034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.059 3.941 10 C 0.040 3.960 11 C -0.085 4.085 12 N -0.304 5.304 13 C 0.095 3.905 14 C 0.140 3.860 15 H 0.123 0.877 16 O -0.524 6.524 17 C -0.121 4.121 18 C -0.065 4.065 19 C -0.143 4.143 20 C 0.116 3.884 21 F -0.130 7.130 22 C -0.143 4.143 23 C -0.001 4.001 24 Cl -0.043 7.043 25 N -0.081 5.081 26 N -0.256 5.256 27 H 0.263 0.737 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.180 0.820 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.374 0.626 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.217 -18.785 -7.392 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.544 4.544 8 H 0.094 0.906 9 C 0.020 3.980 10 C -0.097 4.097 11 C -0.233 4.233 12 N -0.099 5.099 13 C -0.028 4.028 14 C 0.079 3.921 15 H 0.141 0.859 16 O -0.329 6.329 17 C -0.123 4.123 18 C -0.083 4.083 19 C -0.162 4.162 20 C 0.096 3.904 21 F -0.109 7.109 22 C -0.163 4.163 23 C -0.029 4.029 24 Cl -0.014 7.014 25 N -0.060 5.060 26 N -0.124 5.124 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.198 0.802 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.223 0.777 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 22.964 -19.125 -5.959 30.474 hybrid contribution 0.841 1.152 -1.643 2.175 sum 23.805 -17.973 -7.601 30.781 Atomic orbital electron populations 1.69902 1.06229 1.26784 1.51084 1.24980 0.94765 0.98866 0.94774 0.86833 0.80507 0.83873 0.78439 1.20267 1.21247 1.18880 1.20922 0.88162 0.94832 1.50468 0.90572 1.18149 0.97746 0.84633 0.97468 1.22471 0.95880 0.99079 0.92236 1.23309 1.08452 0.85696 1.05838 1.46970 1.32464 1.09420 1.21057 1.22562 0.92673 0.92151 0.95422 1.21039 0.89735 0.92847 0.88446 0.85940 1.86845 1.64216 1.48424 1.33371 1.20390 0.96118 0.95566 1.00259 1.20785 0.99516 0.91193 0.96800 1.21270 0.93788 1.01835 0.99296 1.17504 0.89572 0.87239 0.96036 1.91554 1.69034 1.70533 1.79766 1.20996 1.01429 0.91418 1.02440 1.20464 0.95611 0.86381 1.00397 1.98434 1.95108 1.10916 1.96948 1.78350 1.05676 1.21159 1.00852 1.75136 1.17594 0.96087 1.23565 0.92708 0.95194 0.94440 0.80238 0.88263 0.87245 0.77728 0.83475 0.83546 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.51 -14.81 9.64 -34.44 -0.33 -15.14 16 8 H 0.08 2.49 7.98 -52.49 -0.42 2.07 16 9 C 0.06 1.44 4.62 -29.03 -0.13 1.31 16 10 C 0.04 0.89 6.44 -82.78 -0.53 0.36 16 11 C -0.09 -1.47 11.49 -17.05 -0.20 -1.67 16 12 N -0.30 -4.75 3.44 -61.26 -0.21 -4.96 16 13 C 0.10 0.93 6.12 -4.04 -0.02 0.90 16 14 C 0.14 1.29 2.91 -27.88 -0.08 1.21 16 15 H 0.12 1.34 7.13 -51.93 -0.37 0.97 16 16 O -0.52 -5.44 12.02 -35.23 -0.42 -5.86 16 17 C -0.12 -0.85 5.07 -104.58 -0.53 -1.38 16 18 C -0.06 -0.34 9.30 -39.60 -0.37 -0.71 16 19 C -0.14 -0.75 10.03 -39.51 -0.40 -1.14 16 20 C 0.12 0.76 7.30 -39.42 -0.29 0.47 16 21 F -0.13 -0.96 17.27 2.25 0.04 -0.92 16 22 C -0.14 -0.93 9.81 -39.48 -0.39 -1.32 16 23 C 0.00 -0.01 6.31 -39.51 -0.25 -0.26 16 24 Cl -0.04 -0.34 27.17 -51.86 -1.41 -1.75 16 25 N -0.08 -1.61 12.09 60.35 0.73 -0.88 16 26 N -0.26 -6.06 12.40 33.29 0.41 -5.65 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.03 0.67 7.56 -51.93 -0.39 0.28 16 29 H 0.04 0.93 7.19 -51.93 -0.37 0.55 16 30 H 0.18 2.39 8.06 -52.49 -0.42 1.96 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.11 0.85 7.83 -51.93 -0.41 0.44 16 33 H 0.37 2.40 7.32 45.56 0.33 2.74 16 34 H 0.15 0.44 6.40 -52.49 -0.34 0.10 16 35 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -36.32 333.12 -6.18 -42.50 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -2.82 Total: -1.33 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -3.62 Total: -15.50 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 1.71 Total: -38.90 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.42 Total: -5.86 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.41 Total: -1.75 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.32 -6.18 -42.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881420856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.220 kcal (2) G-P(sol) polarization free energy of solvation -36.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds