Wall clock time and date at job start Tue Mar 31 2020 13:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46505 * 125.86763 * 180.17814 * 12 11 10 14 14 C 1.52998 * 109.46658 * 125.29510 * 13 12 11 15 15 H 1.08998 * 109.47400 * 305.00128 * 14 13 12 16 16 O 1.42906 * 109.47116 * 65.00600 * 14 13 12 17 17 C 1.50697 * 109.47123 * 184.99936 * 14 13 12 18 18 C 1.38252 * 119.98531 * 265.00369 * 17 14 13 19 19 C 1.38178 * 120.03868 * 179.97438 * 18 17 14 20 20 C 1.38488 * 120.00174 * 359.95595 * 19 18 17 21 21 F 1.35102 * 120.01674 * 180.02562 * 20 19 18 22 22 C 1.38416 * 119.96235 * 0.02562 * 20 19 18 23 23 C 1.38337 * 119.96159 * 359.77018 * 22 20 19 24 24 Cl 1.73603 * 119.99960 * 180.25654 * 23 22 20 25 25 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 26 26 N 1.28632 * 110.17939 * 359.72812 * 25 12 11 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 31 31 H 1.09001 * 109.47211 * 245.29764 * 13 12 11 32 32 H 1.08999 * 109.47008 * 5.29843 * 13 12 11 33 33 H 0.96699 * 114.00201 * 59.99092 * 16 14 13 34 34 H 1.07999 * 119.97714 * 359.97438 * 18 17 14 35 35 H 1.08003 * 119.99785 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.01430 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.8698 -3.1744 -0.8760 12 7 5.0376 -4.4573 -0.4799 13 6 5.8860 -5.4546 -1.1371 14 6 6.8674 -6.0394 -0.1195 15 1 7.4295 -5.2316 0.3491 16 8 6.1439 -6.7590 0.8810 17 6 7.8200 -6.9738 -0.8198 18 6 7.5578 -8.3308 -0.8528 19 6 8.4303 -9.1885 -1.4951 20 6 9.5676 -8.6888 -2.1072 21 9 10.4206 -9.5270 -2.7358 22 6 9.8300 -7.3301 -2.0746 23 6 8.9533 -6.4723 -1.4347 24 17 9.2779 -4.7673 -1.3990 25 7 4.3199 -4.6523 0.5707 26 7 3.6970 -3.5728 0.8891 27 1 -0.4849 0.8400 0.0004 28 1 3.8786 -0.6821 -0.8838 29 1 3.8711 -0.6785 0.8962 30 1 5.3283 -2.6931 -1.7272 31 1 5.2627 -6.2525 -1.5409 32 1 6.4413 -4.9820 -1.9473 33 1 5.6196 -7.4942 0.5349 34 1 6.6706 -8.7207 -0.3761 35 1 8.2250 -10.2485 -1.5201 36 1 10.7169 -6.9395 -2.5513 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881420856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:50 Heat of formation + Delta-G solvation = 1.342185 kcal Electronic energy + Delta-G solvation = -23914.806188 eV Core-core repulsion = 19954.907988 eV Total energy + Delta-G solvation = -3959.898200 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.05651 -44.03334 -40.93110 -38.30462 -37.61147 -35.85727 -34.89622 -33.16079 -32.54935 -32.10319 -30.08988 -29.23475 -25.67365 -25.05320 -24.24354 -22.85755 -22.52673 -21.57000 -19.32253 -18.89726 -18.58079 -18.13153 -17.49012 -17.34749 -16.76249 -16.37402 -16.15636 -16.02915 -15.75785 -15.51091 -15.06025 -15.05766 -14.51543 -14.49342 -14.13309 -13.96359 -13.80860 -13.42058 -12.91432 -12.85370 -12.47467 -12.43080 -12.35089 -12.31759 -12.06129 -11.89076 -11.60513 -11.57432 -11.36851 -10.79816 -10.71385 -10.14272 -9.84626 -9.76742 -8.22831 -6.27647 -0.26562 -0.08096 0.79774 0.85956 1.41390 1.45863 1.51588 1.57520 1.80069 2.22313 2.42112 3.02684 3.11270 3.18540 3.21069 3.48798 3.57762 3.70604 3.77781 3.87323 3.96957 4.14475 4.26238 4.30255 4.44197 4.50850 4.69767 4.74723 4.79220 4.97207 5.06815 5.10768 5.35221 5.39643 5.55566 5.64328 5.83413 6.34347 6.66786 6.77543 7.33873 7.76932 8.94938 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.002577 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.291098 B =10864.183491 C =11531.327034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.516 4.516 8 H 0.019 0.981 9 C 0.066 3.934 10 C -0.007 4.007 11 C -0.055 4.055 12 N -0.284 5.284 13 C 0.083 3.917 14 C 0.149 3.851 15 H 0.104 0.896 16 O -0.547 6.547 17 C -0.123 4.123 18 C -0.060 4.060 19 C -0.137 4.137 20 C 0.107 3.893 21 F -0.137 7.137 22 C -0.147 4.147 23 C -0.008 4.008 24 Cl -0.053 7.053 25 N -0.091 5.091 26 N -0.316 5.316 27 H 0.266 0.734 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.227 0.773 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.390 0.610 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.818 -19.167 -8.968 33.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.780 3.220 4 H -0.180 1.180 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.554 4.554 8 H 0.037 0.963 9 C 0.027 3.973 10 C -0.145 4.145 11 C -0.205 4.205 12 N -0.080 5.080 13 C -0.037 4.037 14 C 0.088 3.912 15 H 0.121 0.879 16 O -0.354 6.354 17 C -0.125 4.125 18 C -0.078 4.078 19 C -0.155 4.155 20 C 0.087 3.913 21 F -0.116 7.116 22 C -0.166 4.166 23 C -0.035 4.035 24 Cl -0.024 7.024 25 N -0.070 5.070 26 N -0.182 5.182 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.243 0.757 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.241 0.759 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 25.592 -19.572 -7.540 33.088 hybrid contribution 0.060 1.037 -1.197 1.585 sum 25.652 -18.535 -8.737 32.832 Atomic orbital electron populations 1.70088 1.08579 1.28206 1.52713 1.26074 0.95707 1.03693 0.94006 0.85554 0.79397 0.77356 0.79691 1.17996 1.21351 1.16647 1.21130 0.91073 0.92828 1.50386 0.96270 1.17969 0.94150 0.86905 0.98293 1.22364 0.98940 0.98606 0.94608 1.23781 1.05910 0.85734 1.05061 1.47378 1.31047 1.09979 1.19551 1.23157 0.92755 0.91895 0.95906 1.20815 0.89590 0.92810 0.87944 0.87877 1.86814 1.64768 1.49341 1.34525 1.20193 0.95766 0.95881 1.00686 1.21057 1.00203 0.90340 0.96152 1.21531 0.92893 1.02996 0.98126 1.17699 0.90000 0.87224 0.96372 1.91540 1.69368 1.70688 1.79985 1.21091 1.01651 0.91492 1.02358 1.20491 0.95984 0.85967 1.01015 1.98429 1.95195 1.11771 1.97033 1.78213 1.06382 1.20038 1.02395 1.75051 1.19874 0.97523 1.25800 0.92476 0.92306 0.94959 0.75664 0.85601 0.84565 0.75890 0.81085 0.81363 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.80 13.96 21.45 0.30 -61.51 16 2 C 0.00 0.07 5.47 84.66 0.46 0.53 16 3 Si 0.96 43.96 27.47 68.60 1.88 45.84 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.52 -31.26 9.64 25.60 0.25 -31.01 16 8 H 0.02 1.33 7.98 -2.91 -0.02 1.30 16 9 C 0.07 3.19 4.62 29.10 0.13 3.33 16 10 C -0.01 -0.33 6.44 41.60 0.27 -0.06 16 11 C -0.06 -1.78 11.49 83.49 0.96 -0.82 16 12 N -0.28 -8.34 3.44 -347.73 -1.20 -9.54 16 13 C 0.08 1.37 6.12 86.38 0.53 1.90 16 14 C 0.15 2.42 2.91 29.85 0.09 2.50 16 15 H 0.10 2.10 7.13 -2.39 -0.02 2.09 16 16 O -0.55 -10.42 12.02 -148.98 -1.79 -12.21 16 17 C -0.12 -1.41 5.07 -19.84 -0.10 -1.52 16 18 C -0.06 -0.44 9.30 22.26 0.21 -0.23 16 19 C -0.14 -1.01 10.03 22.32 0.22 -0.79 16 20 C 0.11 1.15 7.30 22.37 0.16 1.31 16 21 F -0.14 -1.78 17.27 44.97 0.78 -1.00 16 22 C -0.15 -1.61 9.81 22.34 0.22 -1.39 16 23 C -0.01 -0.09 6.31 22.32 0.14 0.05 16 24 Cl -0.05 -0.75 27.17 -2.72 -0.07 -0.82 16 25 N -0.09 -3.58 12.09 37.02 0.45 -3.14 16 26 N -0.32 -15.33 12.40 -48.60 -0.60 -15.93 16 27 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 28 H 0.06 2.48 7.56 -2.38 -0.02 2.47 16 29 H 0.03 1.58 7.19 -2.39 -0.02 1.56 16 30 H 0.23 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.14 1.56 7.83 -2.39 -0.02 1.54 16 33 H 0.39 4.10 7.32 -74.06 -0.54 3.56 16 34 H 0.17 0.38 6.40 -2.91 -0.02 0.36 16 35 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 36 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -84.24 333.12 3.83 -80.41 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.55 Total: 4.09 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.54 Total: -26.20 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -1.05 Total: -90.11 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.79 Total: -12.21 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.78 Total: -1.00 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.82 kcal Total: -84.24 3.83 -80.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881420856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.753 kcal (2) G-P(sol) polarization free energy of solvation -84.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds