Wall clock time and date at job start Tue Mar 31 2020 14:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37972 * 120.07874 * 2 1 4 4 C 1.38345 * 120.15036 * 180.27270 * 3 2 1 5 5 C 1.38388 * 120.30225 * 359.49526 * 4 3 2 6 6 S 1.76204 * 119.92466 * 180.25513 * 5 4 3 7 7 O 1.42101 * 106.39873 * 23.78724 * 6 5 4 8 8 O 1.42090 * 106.40336 * 156.71227 * 6 5 4 9 9 N 1.65596 * 107.21572 * 270.25155 * 6 5 4 10 10 C 1.47074 * 136.05890 * 269.62798 * 9 6 5 11 11 C 1.53754 * 87.89015 * 152.96202 * 10 9 6 12 12 C 1.50704 * 114.26351 * 139.78917 * 11 10 9 13 13 H 1.08001 * 119.99944 * 266.47995 * 12 11 10 14 14 C 1.37879 * 119.99894 * 86.47956 * 12 11 10 15 15 N 1.31510 * 120.00029 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99797 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47670 * 90.00020 * 16 14 12 18 18 H 1.48495 * 109.46923 * 210.00271 * 16 14 12 19 19 H 1.48509 * 109.47199 * 329.99576 * 16 14 12 20 20 C 1.47066 * 136.05980 * 90.00074 * 9 6 5 21 21 C 1.37922 * 120.14953 * 0.50358 * 5 4 3 22 22 C 1.39602 * 120.07696 * 180.02562 * 2 1 3 23 23 C 1.47725 * 120.14851 * 0.02562 * 22 2 1 24 24 O 1.21465 * 120.00158 * 6.20538 * 23 22 2 25 25 O 1.34714 * 120.00115 * 186.20600 * 23 22 2 26 26 H 1.09003 * 109.46937 * 96.56843 * 1 2 3 27 27 H 1.08995 * 109.47541 * 216.57421 * 1 2 3 28 28 H 1.09003 * 109.46688 * 336.57267 * 1 2 3 29 29 H 1.07998 * 119.92161 * 0.02562 * 3 2 1 30 30 H 1.07997 * 119.84605 * 179.74258 * 4 3 2 31 31 H 1.09001 * 113.46471 * 267.69722 * 10 9 6 32 32 H 1.09004 * 113.46323 * 38.13080 * 10 9 6 33 33 H 1.08997 * 114.39662 * 272.68071 * 11 10 9 34 34 H 0.97005 * 119.99929 * 180.02562 * 15 14 12 35 35 H 1.09006 * 113.46844 * 321.86534 * 20 9 6 36 36 H 1.08997 * 113.47303 * 92.30299 * 20 9 6 37 37 H 1.08006 * 120.07538 * 179.72865 * 21 5 4 38 38 H 0.96693 * 117.00028 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1957 -0.0057 5 6 4.2817 0.0018 -0.0009 6 16 6.0437 0.0156 -0.0014 7 8 6.4352 1.2684 0.5431 8 8 6.4549 -1.2310 0.5426 9 7 6.5333 0.0198 -1.5833 10 6 6.8608 -0.9980 -2.5933 11 6 6.4480 0.0192 -3.6698 12 6 7.3384 0.0299 -4.8856 13 1 8.1667 0.7207 -4.9423 14 6 7.0956 -0.8421 -5.9256 15 7 7.8723 -0.8324 -6.9868 16 14 5.6634 -2.0374 -5.8272 17 1 4.4497 -1.4043 -6.4029 18 1 5.9911 -3.2666 -6.5931 19 1 5.4108 -2.3915 -4.4073 20 6 6.8384 1.0430 -2.5947 21 6 3.6031 -1.1990 -0.0009 22 6 2.2066 -1.2080 -0.0005 23 6 1.4730 -2.4903 -0.0017 24 8 0.2638 -2.4981 -0.1159 25 8 2.1452 -3.6510 0.1239 26 1 -0.3633 -0.1176 -1.0210 27 1 -0.3634 -0.8252 0.6123 28 1 -0.3633 0.9430 0.4086 29 1 1.6585 2.1292 0.0004 30 1 4.1182 2.1331 -0.0099 31 1 7.9196 -1.2554 -2.6226 32 1 6.2143 -1.8746 -2.5515 33 1 5.3857 0.0104 -3.9137 34 1 7.7012 -1.4457 -7.7187 35 1 6.1728 1.9053 -2.5544 36 1 7.8912 1.3236 -2.6246 37 1 4.1504 -2.1300 -0.0016 38 1 1.6220 -4.4641 0.1181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907039501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:32 Heat of formation + Delta-G solvation = -95.704666 kcal Electronic energy + Delta-G solvation = -25511.229720 eV Core-core repulsion = 21640.334513 eV Total energy + Delta-G solvation = -3870.895207 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89340 -39.04612 -38.54772 -37.04678 -36.48270 -35.68767 -33.21227 -32.62071 -31.82415 -28.91883 -27.83000 -25.31073 -24.79881 -24.50192 -22.68146 -21.69825 -19.78457 -18.85438 -18.33713 -17.94729 -17.17260 -16.89373 -16.48680 -16.09552 -15.96386 -15.56650 -15.10987 -14.61667 -14.28784 -14.05174 -13.89300 -13.61922 -13.39150 -12.91249 -12.70334 -12.57930 -12.41143 -12.29819 -12.18776 -11.95890 -11.85521 -11.83316 -11.80002 -11.66793 -11.02485 -10.86042 -10.52220 -10.43384 -10.08909 -9.63512 -9.50774 -9.40547 -9.24744 -8.68482 -8.51732 -6.22026 -4.23704 0.19598 0.47638 0.71231 2.12476 2.68038 3.04241 3.19376 3.28924 3.29559 3.36368 3.91042 4.15208 4.29693 4.39363 4.43297 4.62623 4.83801 5.03020 5.05219 5.09468 5.29704 5.39607 5.50313 5.54449 5.56385 5.70446 5.79339 5.83272 6.01932 6.02719 6.19923 6.20962 6.25587 6.36790 6.39248 6.51648 7.09517 7.26858 7.55329 7.57753 8.35188 8.82271 9.39479 10.90035 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004867 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.974882 B = 5751.135002 C = 6925.506721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.031 3.969 3 C -0.155 4.155 4 C 0.022 3.978 5 C -0.693 4.693 6 S 2.712 3.288 7 O -0.960 6.960 8 O -0.958 6.958 9 N -1.049 6.049 10 C 0.117 3.883 11 C -0.008 4.008 12 C -0.512 4.512 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.892 5.892 16 Si 0.871 3.129 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.259 1.259 20 C 0.141 3.859 21 C 0.045 3.955 22 C -0.159 4.159 23 C 0.531 3.469 24 O -0.510 6.510 25 O -0.508 6.508 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.266 0.734 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.037 0.285 13.916 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.030 3.970 3 C -0.174 4.174 4 C 0.003 3.997 5 C -0.777 4.777 6 S 2.804 3.196 7 O -0.951 6.951 8 O -0.949 6.949 9 N -0.890 5.890 10 C -0.008 4.008 11 C -0.030 4.030 12 C -0.550 4.550 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.528 5.528 16 Si 0.698 3.302 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.183 1.183 20 C 0.016 3.984 21 C 0.026 3.974 22 C -0.161 4.161 23 C 0.376 3.624 24 O -0.400 6.400 25 O -0.320 6.320 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.172 0.828 38 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -12.650 0.551 14.712 19.411 hybrid contribution -1.771 -1.302 -0.329 2.222 sum -14.421 -0.750 14.383 20.381 Atomic orbital electron populations 1.21264 0.89308 1.03808 1.04323 1.20328 0.97150 0.91366 0.88122 1.21171 0.94106 0.97778 1.04299 1.21231 0.94598 0.97075 0.86779 1.31355 1.28815 0.98863 1.18693 1.01227 0.73331 0.73414 0.71626 1.93547 1.81052 1.44022 1.76451 1.93555 1.80513 1.44463 1.76374 1.59888 1.80685 1.20674 1.27788 1.23484 1.00772 0.92103 0.84407 1.20948 0.97699 0.91692 0.92635 1.20832 1.14026 1.21146 0.99018 0.90097 1.24998 0.95965 0.96767 0.94881 1.69888 1.38244 1.37607 1.07091 0.86964 0.83084 0.81098 0.79075 1.20248 1.21200 1.18342 1.22638 1.00555 0.91160 0.84002 1.21236 0.93069 0.97730 0.85367 1.18952 0.93504 0.90405 1.13204 1.20719 0.85242 0.84263 0.72178 1.90840 1.15070 1.87687 1.46404 1.84590 1.45323 1.17100 1.84984 0.89575 0.88513 0.91308 0.83881 0.83367 0.89521 0.92448 0.92247 0.92374 0.92142 0.89814 0.82771 0.72464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.73 36.01 0.31 -0.92 16 2 C 0.03 0.35 5.91 -104.21 -0.62 -0.27 16 3 C -0.15 -1.61 9.66 -39.64 -0.38 -1.99 16 4 C 0.02 0.27 9.52 -39.49 -0.38 -0.11 16 5 C -0.69 -9.74 5.97 -39.64 -0.24 -9.98 16 6 S 2.71 44.23 6.27 -107.50 -0.67 43.55 16 7 O -0.96 -16.90 17.28 -57.17 -0.99 -17.89 16 8 O -0.96 -17.58 17.27 -57.17 -0.99 -18.57 16 9 N -1.05 -18.28 4.23 -125.02 -0.53 -18.81 16 10 C 0.12 2.25 7.74 -8.37 -0.06 2.18 16 11 C -0.01 -0.17 2.97 -91.12 -0.27 -0.44 16 12 C -0.51 -12.80 9.38 -34.44 -0.32 -13.13 16 13 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 14 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -25.33 13.96 55.43 0.77 -24.55 16 16 Si 0.87 19.67 27.15 -169.99 -4.62 15.06 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.26 -5.44 5.72 56.52 0.32 -5.12 16 20 C 0.14 2.49 8.29 -8.51 -0.07 2.42 16 21 C 0.05 0.62 9.09 -39.17 -0.36 0.27 16 22 C -0.16 -2.03 5.87 -104.99 -0.62 -2.65 16 23 C 0.53 6.40 8.20 34.61 0.28 6.68 16 24 O -0.51 -6.64 14.13 -19.24 -0.27 -6.92 16 25 O -0.51 -4.98 12.70 -40.53 -0.51 -5.49 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.10 1.00 5.86 -51.93 -0.30 0.70 16 28 H 0.07 0.48 8.04 -51.93 -0.42 0.07 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 31 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 32 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 33 H 0.06 1.21 7.03 -51.93 -0.37 0.84 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 37 H 0.15 2.06 7.18 -52.48 -0.38 1.69 16 38 H 0.42 2.00 9.11 45.56 0.42 2.42 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -32.63 338.62 -9.08 -41.71 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.56 Total: 2.78 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.81 Total: -15.98 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.24 Total: -43.36 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.76 Total: -48.86 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.62 Total: 15.06 kcal Atomic # 16 Polarization: 44.23 SS G_CDS: -0.67 Total: 43.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.63 -9.08 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907039501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.991 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds