Wall clock time and date at job start Tue Mar 31 2020 14:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37972 * 120.07874 * 2 1 4 4 C 1.38345 * 120.15036 * 180.27270 * 3 2 1 5 5 C 1.38388 * 120.30225 * 359.49526 * 4 3 2 6 6 S 1.76204 * 119.92466 * 180.25513 * 5 4 3 7 7 O 1.42101 * 106.39873 * 23.78724 * 6 5 4 8 8 O 1.42090 * 106.40336 * 156.71227 * 6 5 4 9 9 N 1.65596 * 107.21572 * 270.25155 * 6 5 4 10 10 C 1.47074 * 136.05890 * 269.62798 * 9 6 5 11 11 C 1.53754 * 87.89015 * 152.96202 * 10 9 6 12 12 C 1.50704 * 114.26351 * 139.78917 * 11 10 9 13 13 H 1.08001 * 119.99944 * 266.47995 * 12 11 10 14 14 C 1.37879 * 119.99894 * 86.47956 * 12 11 10 15 15 N 1.31510 * 120.00029 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99797 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47670 * 90.00020 * 16 14 12 18 18 H 1.48495 * 109.46923 * 210.00271 * 16 14 12 19 19 H 1.48509 * 109.47199 * 329.99576 * 16 14 12 20 20 C 1.47066 * 136.05980 * 90.00074 * 9 6 5 21 21 C 1.37922 * 120.14953 * 0.50358 * 5 4 3 22 22 C 1.39602 * 120.07696 * 180.02562 * 2 1 3 23 23 C 1.47725 * 120.14851 * 0.02562 * 22 2 1 24 24 O 1.21465 * 120.00158 * 6.20538 * 23 22 2 25 25 O 1.34714 * 120.00115 * 186.20600 * 23 22 2 26 26 H 1.09003 * 109.46937 * 96.56843 * 1 2 3 27 27 H 1.08995 * 109.47541 * 216.57421 * 1 2 3 28 28 H 1.09003 * 109.46688 * 336.57267 * 1 2 3 29 29 H 1.07998 * 119.92161 * 0.02562 * 3 2 1 30 30 H 1.07997 * 119.84605 * 179.74258 * 4 3 2 31 31 H 1.09001 * 113.46471 * 267.69722 * 10 9 6 32 32 H 1.09004 * 113.46323 * 38.13080 * 10 9 6 33 33 H 1.08997 * 114.39662 * 272.68071 * 11 10 9 34 34 H 0.97005 * 119.99929 * 180.02562 * 15 14 12 35 35 H 1.09006 * 113.46844 * 321.86534 * 20 9 6 36 36 H 1.08997 * 113.47303 * 92.30299 * 20 9 6 37 37 H 1.08006 * 120.07538 * 179.72865 * 21 5 4 38 38 H 0.96693 * 117.00028 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1957 -0.0057 5 6 4.2817 0.0018 -0.0009 6 16 6.0437 0.0156 -0.0014 7 8 6.4352 1.2684 0.5431 8 8 6.4549 -1.2310 0.5426 9 7 6.5333 0.0198 -1.5833 10 6 6.8608 -0.9980 -2.5933 11 6 6.4480 0.0192 -3.6698 12 6 7.3384 0.0299 -4.8856 13 1 8.1667 0.7207 -4.9423 14 6 7.0956 -0.8421 -5.9256 15 7 7.8723 -0.8324 -6.9868 16 14 5.6634 -2.0374 -5.8272 17 1 4.4497 -1.4043 -6.4029 18 1 5.9911 -3.2666 -6.5931 19 1 5.4108 -2.3915 -4.4073 20 6 6.8384 1.0430 -2.5947 21 6 3.6031 -1.1990 -0.0009 22 6 2.2066 -1.2080 -0.0005 23 6 1.4730 -2.4903 -0.0017 24 8 0.2638 -2.4981 -0.1159 25 8 2.1452 -3.6510 0.1239 26 1 -0.3633 -0.1176 -1.0210 27 1 -0.3634 -0.8252 0.6123 28 1 -0.3633 0.9430 0.4086 29 1 1.6585 2.1292 0.0004 30 1 4.1182 2.1331 -0.0099 31 1 7.9196 -1.2554 -2.6226 32 1 6.2143 -1.8746 -2.5515 33 1 5.3857 0.0104 -3.9137 34 1 7.7012 -1.4457 -7.7187 35 1 6.1728 1.9053 -2.5544 36 1 7.8912 1.3236 -2.6246 37 1 4.1504 -2.1300 -0.0016 38 1 1.6220 -4.4641 0.1181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907039501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:31 Heat of formation + Delta-G solvation = -119.739464 kcal Electronic energy + Delta-G solvation = -25512.271947 eV Core-core repulsion = 21640.334513 eV Total energy + Delta-G solvation = -3871.937434 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76349 -40.06585 -39.92317 -38.40366 -37.31795 -37.04850 -34.58687 -34.08815 -32.71448 -30.59961 -28.66463 -26.78324 -26.27649 -25.68177 -23.54884 -22.65508 -21.35339 -19.97988 -19.46343 -19.16953 -18.76548 -18.31815 -17.48072 -17.09909 -16.89204 -16.62139 -16.32696 -16.21376 -15.62158 -15.11476 -14.96775 -14.76153 -14.56725 -14.43723 -13.99881 -13.52031 -13.42377 -13.39692 -13.33525 -13.30661 -13.29429 -13.27203 -12.98718 -12.62616 -12.62368 -12.26808 -11.98280 -11.81818 -11.33631 -11.22461 -11.11517 -10.61802 -10.46729 -10.30211 -9.95629 -8.23532 -6.28577 -0.86070 -0.61827 -0.27323 1.24124 1.41165 1.44966 1.53633 1.86289 1.91327 2.32584 2.40886 2.66875 2.96758 3.12220 3.47607 3.59244 3.75771 3.92236 4.06736 4.17136 4.20517 4.26058 4.51219 4.51958 4.63590 4.68126 4.71883 4.74607 4.81534 4.87221 4.88471 5.04793 5.08068 5.24833 5.43426 5.44155 5.59466 5.66291 5.79182 6.36185 6.79228 6.84601 7.38220 8.92116 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004867 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.974882 B = 5751.135002 C = 6925.506721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.030 3.970 3 C -0.144 4.144 4 C 0.016 3.984 5 C -0.699 4.699 6 S 2.727 3.273 7 O -0.974 6.974 8 O -0.983 6.983 9 N -1.048 6.048 10 C 0.118 3.882 11 C -0.018 4.018 12 C -0.508 4.508 13 H 0.046 0.954 14 C 0.021 3.979 15 N -0.945 5.945 16 Si 0.928 3.072 17 H -0.271 1.271 18 H -0.292 1.292 19 H -0.232 1.232 20 C 0.144 3.856 21 C 0.032 3.968 22 C -0.173 4.173 23 C 0.532 3.468 24 O -0.523 6.523 25 O -0.509 6.509 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.182 0.818 30 H 0.165 0.835 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.265 0.735 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.151 0.849 38 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.830 0.764 15.464 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.029 3.971 3 C -0.162 4.162 4 C -0.004 4.004 5 C -0.788 4.788 6 S 2.823 3.177 7 O -0.965 6.965 8 O -0.974 6.974 9 N -0.888 5.888 10 C -0.008 4.008 11 C -0.040 4.040 12 C -0.546 4.546 13 H 0.064 0.936 14 C -0.177 4.177 15 N -0.585 5.585 16 Si 0.752 3.248 17 H -0.197 1.197 18 H -0.219 1.219 19 H -0.155 1.155 20 C 0.019 3.981 21 C 0.013 3.987 22 C -0.175 4.175 23 C 0.378 3.622 24 O -0.415 6.415 25 O -0.323 6.323 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.199 0.801 30 H 0.183 0.817 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.168 0.832 38 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -15.402 1.020 16.283 22.437 hybrid contribution -0.933 -1.395 -0.731 1.830 sum -16.335 -0.375 15.553 22.558 Atomic orbital electron populations 1.21279 0.87847 1.04969 1.04273 1.20705 0.98272 0.91203 0.86891 1.21583 0.93443 0.98965 1.02216 1.21546 0.95595 0.96854 0.86361 1.30857 1.26622 1.00102 1.21172 1.00507 0.74019 0.72480 0.70690 1.93525 1.82111 1.44437 1.76425 1.93521 1.81787 1.45483 1.76626 1.59782 1.81353 1.19790 1.27911 1.23249 1.00705 0.92374 0.84455 1.20923 0.97298 0.94165 0.91588 1.21072 1.13307 1.19571 1.00678 0.93622 1.25803 0.98617 0.98782 0.94526 1.70039 1.40801 1.39298 1.08344 0.86032 0.79792 0.78522 0.80425 1.19663 1.21881 1.15507 1.22572 1.01107 0.91640 0.82755 1.21256 0.93721 0.97554 0.86198 1.19173 0.93236 0.91555 1.13527 1.20660 0.84989 0.84662 0.71926 1.90838 1.15483 1.88000 1.47204 1.84555 1.45709 1.17635 1.84433 0.89522 0.89609 0.88449 0.80093 0.81730 0.90272 0.91286 0.91090 0.92553 0.89163 0.90296 0.83170 0.70130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.73 71.24 0.62 -1.34 16 2 C 0.03 0.58 5.91 -19.60 -0.12 0.46 16 3 C -0.14 -2.38 9.66 22.23 0.21 -2.16 16 4 C 0.02 0.32 9.52 22.33 0.21 0.53 16 5 C -0.70 -18.11 5.97 22.23 0.13 -17.97 16 6 S 2.73 84.98 6.27 -56.49 -0.35 84.62 16 7 O -0.97 -32.69 17.28 -128.00 -2.21 -34.90 16 8 O -0.98 -35.33 17.27 -128.00 -2.21 -37.54 16 9 N -1.05 -34.93 4.23 -549.44 -2.32 -37.25 16 10 C 0.12 4.36 7.74 83.26 0.64 5.01 16 11 C -0.02 -0.74 2.97 -11.12 -0.03 -0.77 16 12 C -0.51 -25.77 9.38 25.60 0.24 -25.53 16 13 H 0.05 2.57 8.06 -2.91 -0.02 2.55 16 14 C 0.02 1.12 5.47 84.66 0.46 1.58 16 15 N -0.95 -55.40 13.96 21.45 0.30 -55.10 16 16 Si 0.93 40.08 27.15 68.60 1.86 41.95 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.23 -8.90 5.72 99.48 0.57 -8.33 16 20 C 0.14 4.88 8.29 83.18 0.69 5.57 16 21 C 0.03 0.83 9.09 22.54 0.20 1.04 16 22 C -0.17 -4.04 5.87 -20.10 -0.12 -4.16 16 23 C 0.53 11.82 8.20 70.33 0.58 12.40 16 24 O -0.52 -12.65 14.13 19.95 0.28 -12.37 16 25 O -0.51 -9.04 12.70 -56.24 -0.71 -9.76 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.56 5.86 -2.39 -0.01 1.55 16 28 H 0.10 0.92 8.04 -2.39 -0.02 0.90 16 29 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 30 H 0.17 2.80 7.61 -2.91 -0.02 2.78 16 31 H 0.08 3.03 8.10 -2.39 -0.02 3.01 16 32 H 0.07 2.39 7.15 -2.39 -0.02 2.37 16 33 H 0.07 2.71 7.03 -2.39 -0.02 2.69 16 34 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 35 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 37 H 0.15 3.86 7.18 -2.91 -0.02 3.84 16 38 H 0.44 3.34 9.11 -74.06 -0.67 2.66 16 Total: -1.00 -71.19 338.62 -1.33 -72.52 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.30 Total: 13.17 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 3.73 Total: -25.34 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -2.02 Total: -92.35 kcal Atomic # 8 Polarization: -89.72 SS G_CDS: -4.85 Total: -94.58 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.86 Total: 41.95 kcal Atomic # 16 Polarization: 84.98 SS G_CDS: -0.35 Total: 84.62 kcal Total: -71.19 -1.33 -72.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907039501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.215 kcal (2) G-P(sol) polarization free energy of solvation -71.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds