Wall clock time and date at job start Tue Mar 31 2020 14:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38386 * 119.84592 * 2 1 4 4 C 1.37927 * 120.14662 * 180.27517 * 3 2 1 5 5 C 1.39653 * 119.84887 * 359.49479 * 4 3 2 6 6 C 1.47721 * 120.14967 * 180.23190 * 5 4 3 7 7 O 1.21471 * 119.99621 * 180.27039 * 6 5 4 8 8 O 1.34708 * 120.00360 * 0.27212 * 6 5 4 9 9 C 1.39609 * 119.69546 * 0.50066 * 5 4 3 10 10 C 1.37959 * 119.85132 * 359.75183 * 9 5 4 11 11 S 1.76204 * 119.92694 * 179.97438 * 10 9 5 12 12 O 1.42101 * 106.40060 * 356.80843 * 11 10 9 13 13 O 1.42098 * 106.40595 * 129.72944 * 11 10 9 14 14 N 1.65600 * 107.21879 * 243.27204 * 11 10 9 15 15 C 1.47066 * 136.05462 * 263.26331 * 14 11 10 16 16 C 1.53759 * 87.88661 * 152.96350 * 15 14 11 17 17 C 1.50700 * 114.26939 * 139.79410 * 16 15 14 18 18 H 1.07997 * 119.99688 * 266.47172 * 17 16 15 19 19 C 1.37872 * 120.00322 * 86.47187 * 17 16 15 20 20 N 1.31514 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47142 * 89.99928 * 21 19 17 23 23 H 1.48504 * 109.47169 * 210.00164 * 21 19 17 24 24 H 1.48500 * 109.46831 * 329.99693 * 21 19 17 25 25 C 1.47066 * 136.05772 * 83.62968 * 14 11 10 26 26 H 1.08999 * 109.47206 * 85.04927 * 1 2 3 27 27 H 1.08998 * 109.47449 * 205.04630 * 1 2 3 28 28 H 1.09005 * 109.47555 * 325.04953 * 1 2 3 29 29 H 1.07997 * 119.92978 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.07778 * 179.71952 * 4 3 2 31 31 H 0.96698 * 117.00356 * 180.02562 * 8 6 5 32 32 H 1.08007 * 120.07358 * 179.72752 * 9 5 4 33 33 H 1.09002 * 113.46961 * 267.69103 * 15 14 11 34 34 H 1.08996 * 113.47124 * 38.13363 * 15 14 11 35 35 H 1.09003 * 114.39330 * 272.67454 * 16 15 14 36 36 H 0.96996 * 120.00762 * 179.97438 * 20 19 17 37 37 H 1.08996 * 113.46994 * 321.86665 * 25 14 11 38 38 H 1.09003 * 113.46890 * 92.24864 * 25 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2003 0.0000 4 6 3.5749 1.2076 -0.0057 5 6 4.2764 0.0000 -0.0009 6 6 5.7536 0.0000 -0.0018 7 8 6.3609 -1.0520 -0.0025 8 8 6.4272 1.1666 -0.0018 9 6 3.5751 -1.2072 -0.0008 10 6 2.1956 -1.1999 -0.0004 11 16 1.3085 -2.7224 -0.0010 12 8 2.2824 -3.7542 -0.0778 13 8 0.3539 -2.6311 1.0477 14 7 0.4466 -2.7869 -1.4135 15 6 -0.9304 -2.4796 -1.8288 16 6 -0.3838 -2.2092 -3.2403 17 6 -1.2591 -2.7259 -4.3529 18 1 -1.0799 -3.7058 -4.7702 19 6 -2.2885 -1.9477 -4.8383 20 7 -2.5071 -0.7547 -4.3299 21 14 -3.3739 -2.5885 -6.2170 22 1 -4.5301 -3.3186 -5.6381 23 1 -3.8658 -1.4478 -7.0306 24 1 -2.5884 -3.5085 -7.0783 25 6 0.7194 -3.1830 -2.8033 26 1 -0.3633 0.0887 -1.0238 27 1 -0.3634 -0.9310 0.4350 28 1 -0.3634 0.8423 0.5887 29 1 1.6521 2.1335 0.0004 30 1 4.1113 2.1450 -0.0103 31 1 7.3928 1.1160 -0.0028 32 1 4.1115 -2.1447 -0.0015 33 1 -1.6004 -3.3380 -1.7799 34 1 -1.3426 -1.5944 -1.3444 35 1 -0.0399 -1.1875 -3.4018 36 1 -3.2311 -0.2070 -4.6715 37 1 1.7127 -2.8970 -3.1492 38 1 0.4853 -4.2271 -3.0111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907039775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:14 Heat of formation + Delta-G solvation = -98.906234 kcal Electronic energy + Delta-G solvation = -25614.566328 eV Core-core repulsion = 21743.532291 eV Total energy + Delta-G solvation = -3871.034037 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64573 -39.09508 -38.33532 -37.03501 -36.32971 -35.59857 -33.20675 -32.66393 -31.51119 -28.41507 -27.95919 -25.02948 -24.63268 -23.78998 -23.29827 -21.35440 -19.98977 -18.91520 -18.12962 -17.81567 -17.04558 -16.57911 -16.02055 -16.00183 -15.84730 -15.49134 -14.94255 -14.65858 -14.31891 -14.12826 -13.77870 -13.52918 -13.13378 -12.91706 -12.55504 -12.48367 -12.26388 -11.87893 -11.80376 -11.75574 -11.73892 -11.55073 -11.42699 -11.37252 -11.02366 -10.92469 -10.61148 -10.53142 -10.33205 -9.63086 -9.28154 -9.13926 -9.06367 -8.62940 -8.30136 -6.21186 -4.24976 0.33391 0.59893 0.84573 2.22223 2.72385 3.19786 3.22967 3.30783 3.33741 3.45343 3.98727 4.31655 4.39109 4.54659 4.61428 4.70861 4.85523 5.07850 5.15400 5.33776 5.49670 5.58031 5.72076 5.75491 5.82503 5.88873 6.04473 6.13875 6.19079 6.19121 6.25822 6.35332 6.43144 6.53139 6.64154 6.78025 7.42777 7.57085 7.62680 7.77242 8.17084 8.78456 9.41250 10.88577 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.003758 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.245131 B = 7448.192050 C = 7817.506325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.071 3.929 3 C -0.158 4.158 4 C -0.008 4.008 5 C -0.165 4.165 6 C 0.531 3.469 7 O -0.511 6.511 8 O -0.513 6.513 9 C 0.047 3.953 10 C -0.689 4.689 11 S 2.713 3.287 12 O -0.965 6.965 13 O -0.958 6.958 14 N -1.046 6.046 15 C 0.126 3.874 16 C 0.035 3.965 17 C -0.516 4.516 18 H 0.064 0.936 19 C 0.069 3.931 20 N -0.887 5.887 21 Si 0.894 3.106 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.126 3.874 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.415 0.585 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.264 0.736 37 H 0.055 0.945 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 6.502 7.932 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.070 3.930 3 C -0.176 4.176 4 C -0.027 4.027 5 C -0.167 4.167 6 C 0.375 3.625 7 O -0.400 6.400 8 O -0.325 6.325 9 C 0.028 3.972 10 C -0.774 4.774 11 S 2.806 3.194 12 O -0.955 6.955 13 O -0.949 6.949 14 N -0.889 5.889 15 C 0.002 3.998 16 C 0.014 3.986 17 C -0.555 4.555 18 H 0.082 0.918 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C 0.001 3.999 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.274 0.726 32 H 0.173 0.827 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.897 5.796 8.826 14.472 hybrid contribution 0.404 0.503 -0.861 1.076 sum 10.300 6.299 7.965 14.464 Atomic orbital electron populations 1.21907 0.89402 1.06667 1.05739 1.19958 0.96748 0.91562 0.84747 1.21217 0.93920 0.98339 1.04122 1.21684 0.94393 0.97476 0.89127 1.19008 0.89131 0.95064 1.13468 1.20763 0.88583 0.81046 0.72103 1.90917 1.70089 1.32820 1.46150 1.84534 1.26871 1.35113 1.86002 1.21016 0.91872 0.98464 0.85850 1.31150 1.05506 1.21272 1.19459 1.01192 0.72795 0.73221 0.72236 1.93533 1.62152 1.53381 1.86455 1.93509 1.60844 1.86802 1.53719 1.59846 1.24649 1.80593 1.23769 1.23312 0.80156 0.99352 0.97029 1.20524 0.91329 0.95521 0.91219 1.20983 1.13945 1.02572 1.17977 0.91782 1.25002 0.97340 0.94606 0.96487 1.69921 1.30846 1.09564 1.42041 0.86556 0.80734 0.78525 0.81981 1.20521 1.21229 1.19731 1.22862 1.00165 1.00616 0.76217 0.87135 0.87988 0.89426 0.84011 0.83799 0.72646 0.82666 0.90738 0.91765 0.91359 0.92669 0.92654 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.22 36.01 0.30 -2.23 16 2 C 0.07 1.01 5.88 -104.53 -0.61 0.39 16 3 C -0.16 -1.83 9.70 -39.64 -0.38 -2.21 16 4 C -0.01 -0.09 9.62 -39.17 -0.38 -0.47 16 5 C -0.16 -2.18 5.87 -104.98 -0.62 -2.80 16 6 C 0.53 6.60 8.27 34.61 0.29 6.89 16 7 O -0.51 -7.84 17.13 -19.24 -0.33 -8.17 16 8 O -0.51 -4.34 12.68 -40.51 -0.51 -4.86 16 9 C 0.05 0.72 9.09 -39.17 -0.36 0.36 16 10 C -0.69 -10.86 5.90 -39.64 -0.23 -11.10 16 11 S 2.71 48.31 5.50 -107.50 -0.59 47.72 16 12 O -0.96 -19.01 16.97 -57.17 -0.97 -19.98 16 13 O -0.96 -18.31 15.51 -57.17 -0.89 -19.19 16 14 N -1.05 -19.23 3.99 -125.01 -0.50 -19.73 16 15 C 0.13 2.49 7.73 -8.37 -0.06 2.43 16 16 C 0.04 0.76 3.79 -91.12 -0.35 0.42 16 17 C -0.52 -12.46 8.83 -34.44 -0.30 -12.76 16 18 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -22.83 13.26 55.43 0.74 -22.09 16 21 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.13 2.37 8.29 -8.50 -0.07 2.30 16 26 H 0.11 1.63 7.04 -51.93 -0.37 1.27 16 27 H 0.10 1.59 4.15 -51.93 -0.22 1.38 16 28 H 0.09 0.98 8.12 -51.93 -0.42 0.55 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.14 1.18 7.61 -52.49 -0.40 0.78 16 31 H 0.41 1.60 9.11 45.56 0.42 2.01 16 32 H 0.16 2.41 6.92 -52.48 -0.36 2.05 16 33 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 34 H 0.06 1.22 5.60 -51.93 -0.29 0.93 16 35 H 0.07 1.56 8.11 -51.93 -0.42 1.14 16 36 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -31.01 337.74 -9.16 -40.18 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.29 Total: 3.77 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.88 Total: -17.16 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.24 Total: -41.82 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -2.70 Total: -52.20 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.59 Total: 47.72 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.01 -9.16 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907039775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.730 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds