Wall clock time and date at job start Tue Mar 31 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 N 1.46900 * 109.46969 * 177.54217 * 3 2 1 5 5 C 1.46894 * 110.99985 * 58.72149 * 4 3 2 6 6 C 1.50706 * 109.47344 * 66.04519 * 5 4 3 7 7 H 1.07998 * 119.99516 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99828 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00506 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99821 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47217 * 59.99701 * 10 8 6 12 12 H 1.48497 * 109.47256 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46923 * 299.99973 * 10 8 6 14 14 C 1.46899 * 111.00215 * 294.76338 * 4 3 2 15 15 C 1.50703 * 109.47343 * 291.21025 * 14 4 3 16 16 C 1.38238 * 120.00799 * 103.40656 * 15 14 4 17 17 C 1.38218 * 120.01449 * 179.97438 * 16 15 14 18 18 C 1.50693 * 119.99172 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.01498 * 359.68308 * 17 16 15 20 20 C 1.38194 * 120.01050 * 0.60114 * 19 17 16 21 21 C 1.38302 * 120.00393 * 283.39039 * 15 14 4 22 22 Br 1.89105 * 120.01046 * 0.04126 * 21 15 14 23 23 H 1.08995 * 109.47088 * 299.99855 * 1 2 3 24 24 H 1.08994 * 109.47049 * 60.00102 * 1 2 3 25 25 H 1.09002 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47072 * 239.99424 * 2 1 3 27 27 H 1.09003 * 109.47204 * 120.00020 * 2 1 3 28 28 H 1.08999 * 109.46888 * 57.54084 * 3 2 1 29 29 H 1.08998 * 109.46734 * 297.53961 * 3 2 1 30 30 H 1.09009 * 109.46904 * 186.04181 * 5 4 3 31 31 H 1.08997 * 109.47259 * 306.04341 * 5 4 3 32 32 H 0.96998 * 119.99923 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47344 * 171.21066 * 14 4 3 34 34 H 1.09004 * 109.46952 * 51.20788 * 14 4 3 35 35 H 1.08008 * 119.99275 * 359.97438 * 16 15 14 36 36 H 1.09006 * 109.46941 * 90.00400 * 18 17 16 37 37 H 1.09005 * 109.47545 * 210.00370 * 18 17 16 38 38 H 1.08995 * 109.47771 * 330.00576 * 18 17 16 39 39 H 1.07999 * 119.99278 * 180.29688 * 19 17 16 40 40 H 1.07992 * 120.00408 * 179.69807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5078 1.4428 0.0594 5 6 4.0810 0.7143 -1.0801 6 6 3.7736 1.4551 -2.3560 7 1 3.2086 2.3749 -2.3236 8 6 4.2137 0.9585 -3.5646 9 7 4.9022 -0.1613 -3.6040 10 14 3.8333 1.8772 -5.1460 11 1 4.4225 3.2387 -5.0815 12 1 4.4126 1.1406 -6.2979 13 1 2.3618 1.9822 -5.3157 14 6 3.9833 0.8864 1.3330 15 6 3.6376 1.8318 2.4546 16 6 2.5769 1.5492 3.2948 17 6 2.2601 2.4159 4.3238 18 6 1.1033 2.1077 5.2391 19 6 3.0080 3.5626 4.5173 20 6 4.0649 3.8489 3.6743 21 6 4.3818 2.9821 2.6436 22 35 5.8325 3.3696 1.4942 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6411 1.9688 0.8671 29 1 1.7131 1.9433 -0.9112 30 1 5.1612 0.6373 -0.9559 31 1 3.6485 -0.2851 -1.1271 32 1 5.2121 -0.5104 -4.4543 33 1 5.0643 0.7532 1.2904 34 1 3.5052 -0.0771 1.5096 35 1 1.9956 0.6510 3.1471 36 1 1.4570 1.5205 6.0866 37 1 0.6667 3.0392 5.5994 38 1 0.3493 1.5403 4.6935 39 1 2.7631 4.2372 5.3244 40 1 4.6460 4.7471 3.8225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137384225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:59 Heat of formation + Delta-G solvation = 17.673235 kcal Electronic energy + Delta-G solvation = -20119.891172 eV Core-core repulsion = 17173.274102 eV Total energy + Delta-G solvation = -2946.617070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58073 -37.22625 -33.50536 -32.75581 -32.21350 -30.93570 -30.07010 -27.22700 -26.44679 -25.88901 -23.85441 -22.16505 -22.02524 -20.58461 -18.97046 -16.28409 -16.03316 -15.80517 -15.12993 -14.85437 -14.47802 -14.16062 -13.91326 -13.46833 -13.33841 -13.04116 -12.77462 -12.44493 -12.30702 -12.16416 -11.62810 -11.33987 -11.26855 -11.03828 -10.90059 -10.87386 -10.79049 -10.63299 -10.43986 -10.25506 -9.86895 -9.74092 -9.51177 -9.16389 -8.71689 -8.36838 -8.22761 -7.07993 -5.96591 -3.96367 1.25650 1.42752 2.11667 3.36904 3.40829 3.44231 3.69888 4.48070 4.78192 4.81741 4.96370 5.18119 5.23980 5.36297 5.39697 5.48169 5.53224 5.56489 5.64106 5.65530 5.86673 5.87842 5.93552 6.03222 6.11853 6.20793 6.30714 6.35053 6.43751 6.51265 6.56220 6.63279 6.79865 6.95808 6.99054 7.38493 7.46073 7.86480 8.16108 8.27663 8.61396 9.10622 9.66952 11.14178 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.005463 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.197309 B = 5123.874704 C = 6672.834928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.067 3.933 4 N -0.518 5.518 5 C 0.193 3.807 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.078 3.922 15 C -0.030 4.030 16 C -0.112 4.112 17 C -0.079 4.079 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.094 4.094 21 C -0.075 4.075 22 Br -0.034 7.034 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.029 0.971 31 H -0.002 1.002 32 H 0.260 0.740 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 4.862 17.285 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.062 4.062 4 N -0.241 5.241 5 C 0.068 3.932 6 C -0.537 4.537 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.050 4.050 15 C -0.033 4.033 16 C -0.132 4.132 17 C -0.080 4.080 18 C -0.170 4.170 19 C -0.146 4.146 20 C -0.114 4.114 21 C -0.155 4.155 22 Br 0.052 6.948 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.142 0.858 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.165 5.375 16.660 17.789 hybrid contribution -0.746 -0.491 -0.668 1.116 sum -3.911 4.883 15.992 17.172 Atomic orbital electron populations 1.21649 0.96619 1.00582 1.01133 1.22169 0.95359 1.00495 1.02151 1.22048 0.88541 0.94272 1.01339 1.62356 1.06279 1.54724 1.00702 1.19764 0.94852 0.91941 0.86608 1.21075 1.34031 1.08290 0.90280 0.92070 1.24932 0.95454 0.95091 0.98999 1.69944 1.37711 1.20433 1.25919 0.86634 0.78478 0.79921 0.82808 1.20248 1.21489 1.20394 1.21185 1.01196 0.93414 0.89207 1.19926 0.93508 0.94321 0.95545 1.20942 0.97233 0.99868 0.95135 1.19932 0.96980 0.94747 0.96292 1.20781 0.95689 1.02107 0.98378 1.20905 0.96139 0.97532 0.99998 1.21054 0.97567 0.98658 0.94078 1.21746 0.98263 0.97972 0.97524 1.96753 1.39829 1.94194 1.64048 0.93655 0.92780 0.93674 0.90384 0.93245 0.93150 0.90291 0.95329 0.98439 0.93033 0.89835 0.94319 0.85782 0.91228 0.91600 0.91466 0.85858 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.16 -2.86 5.25 -26.73 -0.14 -3.00 16 3 C 0.07 1.27 4.98 -3.83 -0.02 1.25 16 4 N -0.52 -10.83 4.53 -237.52 -1.08 -11.91 16 5 C 0.19 4.88 4.45 -4.98 -0.02 4.85 16 6 C -0.50 -13.76 8.53 -34.44 -0.29 -14.05 16 7 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.08 1.41 4.24 -4.98 -0.02 1.39 16 15 C -0.03 -0.49 4.59 -104.60 -0.48 -0.97 16 16 C -0.11 -1.53 8.54 -39.59 -0.34 -1.87 16 17 C -0.08 -0.93 5.88 -104.62 -0.62 -1.54 16 18 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 19 C -0.13 -1.46 9.70 -39.59 -0.38 -1.85 16 20 C -0.09 -1.23 9.79 -39.56 -0.39 -1.62 16 21 C -0.07 -1.17 6.22 -39.52 -0.25 -1.42 16 22 Br -0.03 -0.58 31.97 -68.01 -2.17 -2.75 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 1.62 6.39 -51.93 -0.33 1.29 16 27 H 0.05 0.82 6.25 -51.93 -0.32 0.49 16 28 H 0.05 0.89 6.63 -51.93 -0.34 0.55 16 29 H 0.08 1.67 6.89 -51.93 -0.36 1.31 16 30 H 0.03 0.79 7.90 -51.92 -0.41 0.38 16 31 H 0.00 -0.05 6.02 -51.93 -0.31 -0.37 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.08 1.58 7.05 -51.93 -0.37 1.22 16 34 H 0.04 0.67 5.87 -51.93 -0.30 0.37 16 35 H 0.12 1.56 8.01 -52.48 -0.42 1.14 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.07 0.55 8.08 -51.93 -0.42 0.14 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -29.24 339.47 -10.79 -40.03 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.06 Total: -1.77 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.32 Total: -19.66 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.34 Total: -37.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.17 Total: -2.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.24 -10.79 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137384225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.702 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds