Wall clock time and date at job start Tue Mar 31 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 N 1.46900 * 109.46969 * 177.54217 * 3 2 1 5 5 C 1.46894 * 110.99985 * 58.72149 * 4 3 2 6 6 C 1.50706 * 109.47344 * 66.04519 * 5 4 3 7 7 H 1.07998 * 119.99516 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99828 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00506 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99821 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47217 * 59.99701 * 10 8 6 12 12 H 1.48497 * 109.47256 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46923 * 299.99973 * 10 8 6 14 14 C 1.46899 * 111.00215 * 294.76338 * 4 3 2 15 15 C 1.50703 * 109.47343 * 291.21025 * 14 4 3 16 16 C 1.38238 * 120.00799 * 103.40656 * 15 14 4 17 17 C 1.38218 * 120.01449 * 179.97438 * 16 15 14 18 18 C 1.50693 * 119.99172 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.01498 * 359.68308 * 17 16 15 20 20 C 1.38194 * 120.01050 * 0.60114 * 19 17 16 21 21 C 1.38302 * 120.00393 * 283.39039 * 15 14 4 22 22 Br 1.89105 * 120.01046 * 0.04126 * 21 15 14 23 23 H 1.08995 * 109.47088 * 299.99855 * 1 2 3 24 24 H 1.08994 * 109.47049 * 60.00102 * 1 2 3 25 25 H 1.09002 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47072 * 239.99424 * 2 1 3 27 27 H 1.09003 * 109.47204 * 120.00020 * 2 1 3 28 28 H 1.08999 * 109.46888 * 57.54084 * 3 2 1 29 29 H 1.08998 * 109.46734 * 297.53961 * 3 2 1 30 30 H 1.09009 * 109.46904 * 186.04181 * 5 4 3 31 31 H 1.08997 * 109.47259 * 306.04341 * 5 4 3 32 32 H 0.96998 * 119.99923 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47344 * 171.21066 * 14 4 3 34 34 H 1.09004 * 109.46952 * 51.20788 * 14 4 3 35 35 H 1.08008 * 119.99275 * 359.97438 * 16 15 14 36 36 H 1.09006 * 109.46941 * 90.00400 * 18 17 16 37 37 H 1.09005 * 109.47545 * 210.00370 * 18 17 16 38 38 H 1.08995 * 109.47771 * 330.00576 * 18 17 16 39 39 H 1.07999 * 119.99278 * 180.29688 * 19 17 16 40 40 H 1.07992 * 120.00408 * 179.69807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5078 1.4428 0.0594 5 6 4.0810 0.7143 -1.0801 6 6 3.7736 1.4551 -2.3560 7 1 3.2086 2.3749 -2.3236 8 6 4.2137 0.9585 -3.5646 9 7 4.9022 -0.1613 -3.6040 10 14 3.8333 1.8772 -5.1460 11 1 4.4225 3.2387 -5.0815 12 1 4.4126 1.1406 -6.2979 13 1 2.3618 1.9822 -5.3157 14 6 3.9833 0.8864 1.3330 15 6 3.6376 1.8318 2.4546 16 6 2.5769 1.5492 3.2948 17 6 2.2601 2.4159 4.3238 18 6 1.1033 2.1077 5.2391 19 6 3.0080 3.5626 4.5173 20 6 4.0649 3.8489 3.6743 21 6 4.3818 2.9821 2.6436 22 35 5.8325 3.3696 1.4942 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6411 1.9688 0.8671 29 1 1.7131 1.9433 -0.9112 30 1 5.1612 0.6373 -0.9559 31 1 3.6485 -0.2851 -1.1271 32 1 5.2121 -0.5104 -4.4543 33 1 5.0643 0.7532 1.2904 34 1 3.5052 -0.0771 1.5096 35 1 1.9956 0.6510 3.1471 36 1 1.4570 1.5205 6.0866 37 1 0.6667 3.0392 5.5994 38 1 0.3493 1.5403 4.6935 39 1 2.7631 4.2372 5.3244 40 1 4.6460 4.7471 3.8225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137384225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:59 Heat of formation + Delta-G solvation = 2.220070 kcal Electronic energy + Delta-G solvation = -20120.561271 eV Core-core repulsion = 17173.274102 eV Total energy + Delta-G solvation = -2947.287169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71552 -38.74695 -34.87194 -34.53260 -33.47561 -32.34213 -31.15944 -29.05902 -27.71584 -26.97114 -25.58483 -23.70942 -23.19649 -21.86005 -20.43646 -18.32495 -17.16857 -17.05223 -16.80006 -16.35073 -15.84098 -15.69841 -15.19033 -14.77385 -14.53055 -14.18906 -14.03919 -13.84824 -13.43096 -13.29748 -13.08052 -12.82704 -12.73294 -12.62613 -12.58008 -12.33248 -12.24056 -12.09459 -11.96835 -11.67559 -11.40581 -11.32382 -11.20843 -10.81663 -10.54840 -9.79332 -9.32187 -8.79013 -8.14668 -6.22339 0.21249 0.38241 0.94546 1.40211 1.42904 1.50371 2.42075 2.66124 3.17981 3.48614 3.80504 3.86403 4.00256 4.14869 4.18621 4.34034 4.38714 4.48358 4.56474 4.63171 4.71469 4.77136 4.81109 4.90547 4.91627 5.06359 5.11627 5.14689 5.20061 5.23659 5.32420 5.37435 5.47285 5.49509 5.53473 5.63486 5.72133 5.97991 6.13219 6.44807 6.70584 6.93167 7.45904 8.95625 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.005463 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.197309 B = 5123.874704 C = 6672.834928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.154 4.154 3 C 0.073 3.927 4 N -0.524 5.524 5 C 0.213 3.787 6 C -0.509 4.509 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.085 3.915 15 C -0.051 4.051 16 C -0.117 4.117 17 C -0.072 4.072 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.096 4.096 21 C -0.094 4.094 22 Br -0.062 7.062 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.054 0.946 30 H -0.005 1.005 31 H -0.023 1.023 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.159 0.841 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 6.037 19.369 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C -0.055 4.055 4 N -0.246 5.246 5 C 0.088 3.912 6 C -0.547 4.547 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.784 3.216 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.193 1.193 14 C -0.043 4.043 15 C -0.054 4.054 16 C -0.137 4.137 17 C -0.073 4.073 18 C -0.168 4.168 19 C -0.136 4.136 20 C -0.116 4.116 21 C -0.174 4.174 22 Br 0.023 6.977 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.013 0.987 31 H -0.006 1.006 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.152 0.848 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.177 0.823 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.496 6.558 18.766 20.624 hybrid contribution -0.057 -0.847 -1.163 1.440 sum -5.553 5.712 17.603 19.321 Atomic orbital electron populations 1.21596 0.93813 1.01850 1.02013 1.22033 0.97767 0.98853 1.00652 1.21985 0.87313 0.95297 1.00938 1.62202 1.07500 1.54266 1.00660 1.19325 0.92789 0.91167 0.87966 1.21344 1.33720 1.08142 0.91518 0.92533 1.25762 0.95226 0.95868 1.02410 1.70071 1.38755 1.21931 1.26758 0.85599 0.78724 0.78604 0.78677 1.19800 1.20965 1.19311 1.21072 1.00047 0.94440 0.88728 1.19727 0.95373 0.94430 0.95831 1.21089 0.96495 1.00738 0.95328 1.20334 0.97445 0.93894 0.95595 1.20861 0.94436 1.03414 0.98086 1.21339 0.94695 0.97716 0.99898 1.21309 0.98229 0.98662 0.93409 1.21837 0.98149 0.98979 0.98447 1.96719 1.41422 1.94285 1.65241 0.91220 0.93406 0.92256 0.94426 0.92156 0.91001 0.92764 0.98661 1.00552 0.92961 0.91718 0.93869 0.84800 0.89770 0.89797 0.90922 0.82347 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.15 -5.42 5.25 30.59 0.16 -5.26 16 3 C 0.07 2.80 4.98 86.30 0.43 3.23 16 4 N -0.52 -22.67 4.53 -905.37 -4.10 -26.78 16 5 C 0.21 11.39 4.45 85.56 0.38 11.77 16 6 C -0.51 -29.13 8.53 25.60 0.22 -28.91 16 7 H 0.06 3.23 7.10 -2.91 -0.02 3.21 16 8 C 0.00 0.29 5.46 84.65 0.46 0.75 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 10 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 14 C 0.08 3.17 4.24 85.56 0.36 3.53 16 15 C -0.05 -1.60 4.59 -19.85 -0.09 -1.69 16 16 C -0.12 -2.91 8.54 22.26 0.19 -2.72 16 17 C -0.07 -1.42 5.88 -19.86 -0.12 -1.54 16 18 C -0.11 -1.38 10.01 71.23 0.71 -0.67 16 19 C -0.12 -2.25 9.70 22.27 0.22 -2.04 16 20 C -0.10 -2.32 9.79 22.29 0.22 -2.10 16 21 C -0.09 -2.90 6.22 22.31 0.14 -2.76 16 22 Br -0.06 -2.17 31.97 -20.37 -0.65 -2.82 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.62 6.39 -2.39 -0.02 1.61 16 27 H 0.06 1.97 6.25 -2.39 -0.01 1.95 16 28 H 0.07 2.46 6.63 -2.39 -0.02 2.44 16 29 H 0.05 2.34 6.89 -2.39 -0.02 2.32 16 30 H 0.00 -0.28 7.90 -2.38 -0.02 -0.30 16 31 H -0.02 -1.31 6.02 -2.39 -0.01 -1.32 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.06 2.61 7.05 -2.39 -0.02 2.59 16 34 H 0.04 1.54 5.87 -2.38 -0.01 1.52 16 35 H 0.13 3.00 8.01 -2.91 -0.02 2.98 16 36 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.08 0.79 8.09 -2.38 -0.02 0.77 16 38 H 0.07 0.86 8.08 -2.39 -0.02 0.85 16 39 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -65.72 339.47 2.57 -63.15 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.02 Total: 7.09 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 4.00 Total: -31.40 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -3.82 Total: -83.45 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 35 Polarization: -2.17 SS G_CDS: -0.65 Total: -2.82 kcal Total: -65.72 2.57 -63.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137384225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.370 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds