Wall clock time and date at job start Tue Mar 31 2020 14:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 N 1.46897 * 109.47148 * 181.73816 * 3 2 1 5 5 C 1.46905 * 111.00189 * 75.71858 * 4 3 2 6 6 C 1.50695 * 109.47345 * 195.57534 * 5 4 3 7 7 H 1.08003 * 119.99858 * 355.57827 * 6 5 4 8 8 C 1.37881 * 120.00174 * 175.58287 * 6 5 4 9 9 N 1.31511 * 119.99832 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99724 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46917 * 90.00500 * 10 8 6 12 12 H 1.48503 * 109.47095 * 210.00006 * 10 8 6 13 13 H 1.48503 * 109.47417 * 330.00327 * 10 8 6 14 14 C 1.46902 * 110.99896 * 199.66931 * 4 3 2 15 15 C 1.50700 * 109.47129 * 66.05070 * 14 4 3 16 16 C 1.38262 * 119.98561 * 259.72177 * 15 14 4 17 17 C 1.38206 * 120.00625 * 179.76154 * 16 15 14 18 18 C 1.38337 * 119.99026 * 0.51480 * 17 16 15 19 19 Br 1.89101 * 120.00944 * 179.76440 * 18 17 16 20 20 C 1.38308 * 119.97969 * 359.73664 * 18 17 16 21 21 C 1.38220 * 119.99032 * 79.99433 * 15 14 4 22 22 C 1.50690 * 119.99687 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46668 * 299.99503 * 1 2 3 25 25 H 1.09001 * 109.47180 * 59.99934 * 1 2 3 26 26 H 1.09007 * 109.47101 * 239.99959 * 2 1 3 27 27 H 1.08994 * 109.47248 * 120.00476 * 2 1 3 28 28 H 1.09002 * 109.47097 * 61.73696 * 3 2 1 29 29 H 1.09000 * 109.47198 * 301.73694 * 3 2 1 30 30 H 1.09005 * 109.46862 * 315.57546 * 5 4 3 31 31 H 1.08996 * 109.47055 * 75.57349 * 5 4 3 32 32 H 0.96997 * 119.99618 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.46901 * 186.04396 * 14 4 3 34 34 H 1.08996 * 109.47139 * 306.04680 * 14 4 3 35 35 H 1.07999 * 120.00003 * 0.02562 * 16 15 14 36 36 H 1.07996 * 120.00067 * 180.25643 * 17 16 15 37 37 H 1.08002 * 120.00470 * 180.02562 * 20 18 17 38 38 H 1.09002 * 109.47388 * 90.00068 * 22 21 15 39 39 H 1.09002 * 109.47202 * 209.99932 * 22 21 15 40 40 H 1.08997 * 109.47329 * 330.00001 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5084 1.4427 -0.0420 5 6 3.9966 1.1179 -1.3889 6 6 5.4569 0.7526 -1.3194 7 1 5.9888 0.8295 -0.3826 8 6 6.1141 0.3201 -2.4518 9 7 7.3884 0.0008 -2.3909 10 14 5.1940 0.1865 -4.0719 11 1 5.2950 1.4733 -4.8061 12 1 5.7899 -0.8991 -4.8915 13 1 3.7656 -0.1210 -3.8061 14 6 4.0480 2.7294 0.4174 15 6 3.7312 2.9139 1.8791 16 6 2.6710 3.7152 2.2607 17 6 2.3771 3.8807 3.6009 18 6 3.1503 3.2531 4.5611 19 35 2.7527 3.4845 6.3953 20 6 4.2139 2.4557 4.1791 21 6 4.5040 2.2865 2.8381 22 6 5.6635 1.4187 2.4218 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7023 1.9472 0.9052 29 1 1.6515 1.9652 -0.8740 30 1 3.4301 0.2763 -1.7876 31 1 3.8690 1.9827 -2.0400 32 1 7.8508 -0.3030 -3.1877 33 1 5.1286 2.7417 0.2756 34 1 3.5969 3.5385 -0.1571 35 1 2.0699 4.2085 1.5112 36 1 1.5464 4.5033 3.8987 37 1 4.8176 1.9652 4.9283 38 1 6.5660 2.0261 2.3538 39 1 5.8109 0.6305 3.1601 40 1 5.4523 0.9716 1.4504 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140817196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:20 Heat of formation + Delta-G solvation = 16.347505 kcal Electronic energy + Delta-G solvation = -20045.887135 eV Core-core repulsion = 17099.212578 eV Total energy + Delta-G solvation = -2946.674558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65257 -37.07936 -33.56982 -32.91008 -32.29272 -31.70585 -29.79834 -27.87504 -26.84382 -25.86263 -23.58430 -22.11393 -21.41853 -20.49225 -19.59173 -17.02877 -16.18859 -15.60901 -15.23250 -14.93148 -14.25570 -14.20263 -14.07556 -13.51824 -13.15691 -13.07715 -12.70838 -12.33715 -12.25688 -12.19921 -11.91412 -11.72459 -11.55948 -11.26456 -10.97652 -10.86098 -10.73547 -10.62541 -10.49461 -10.38308 -10.26758 -9.88712 -9.83338 -9.28922 -8.67608 -8.61284 -8.32284 -7.44652 -6.09063 -4.06425 1.22925 1.44630 1.65663 3.25033 3.33465 3.34708 3.70713 4.38435 4.72655 4.88657 4.98953 5.09982 5.23981 5.35164 5.40188 5.42617 5.46934 5.68774 5.74440 5.80076 5.88213 6.00699 6.03385 6.09925 6.17016 6.21323 6.24683 6.28925 6.40681 6.41419 6.55238 6.68237 6.74574 6.83312 6.87281 6.96481 7.09557 7.58842 7.85741 7.96922 8.60532 8.99432 9.52830 11.03540 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.003471 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.359654 B = 8064.504566 C = 8941.662976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.050 3.950 4 N -0.518 5.518 5 C 0.159 3.841 6 C -0.510 4.510 7 H 0.085 0.915 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.871 3.129 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.093 3.907 15 C -0.051 4.051 16 C -0.111 4.111 17 C -0.104 4.104 18 C -0.091 4.091 19 Br -0.068 7.068 20 C -0.098 4.098 21 C -0.045 4.045 22 C -0.131 4.131 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.034 0.966 31 H -0.016 1.016 32 H 0.263 0.737 33 H 0.101 0.899 34 H 0.030 0.970 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 7.019 14.203 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.079 4.079 4 N -0.242 5.242 5 C 0.033 3.967 6 C -0.548 4.548 7 H 0.103 0.897 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.699 3.301 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.034 4.034 15 C -0.052 4.052 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.171 4.171 19 Br 0.017 6.983 20 C -0.118 4.118 21 C -0.047 4.047 22 C -0.187 4.187 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.001 0.999 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.049 0.951 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.035 6.665 15.077 19.837 hybrid contribution -0.670 0.516 -1.857 2.040 sum -11.705 7.181 13.220 19.062 Atomic orbital electron populations 1.21742 0.96630 1.01134 1.01118 1.21474 0.94049 0.97139 1.02936 1.22171 0.89423 0.96659 0.99620 1.61957 1.05625 1.28450 1.28158 1.20285 0.97351 0.94948 0.84141 1.21076 0.92274 1.44003 0.97475 0.89685 1.24872 0.94709 0.94985 0.98554 1.69880 1.09107 1.45403 1.29345 0.86925 0.80653 0.78026 0.84498 1.20420 1.21206 1.19175 1.21057 1.02576 0.90891 0.88895 1.20084 0.93933 0.94755 0.96428 1.21063 0.97508 0.99321 0.95159 1.20919 0.99353 0.99848 0.92285 1.21629 1.01020 1.04780 0.89632 1.96641 1.94597 1.96981 1.10114 1.21005 0.96296 0.98187 0.96285 1.19890 0.97086 0.96258 0.91428 1.21088 0.94507 0.98022 1.05059 0.92997 0.93181 0.93265 0.91692 0.91483 0.91685 0.95913 0.94804 0.99876 0.92665 0.88046 0.95142 0.85711 0.85674 0.85418 0.91349 0.92207 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.85 6.07 -26.73 -0.16 -2.01 16 3 C 0.05 0.82 4.84 -3.83 -0.02 0.80 16 4 N -0.52 -9.95 3.72 -237.52 -0.88 -10.84 16 5 C 0.16 3.60 3.64 -4.98 -0.02 3.58 16 6 C -0.51 -13.47 9.08 -34.44 -0.31 -13.78 16 7 H 0.09 2.38 5.82 -52.48 -0.31 2.07 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -26.39 13.96 55.43 0.77 -25.61 16 10 Si 0.87 20.78 27.56 -169.99 -4.68 16.10 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.14 6.42 56.52 0.36 -5.77 16 14 C 0.09 1.64 4.06 -4.97 -0.02 1.62 16 15 C -0.05 -0.79 4.65 -104.62 -0.49 -1.28 16 16 C -0.11 -1.49 8.26 -39.58 -0.33 -1.81 16 17 C -0.10 -1.31 9.79 -39.56 -0.39 -1.70 16 18 C -0.09 -1.20 6.22 -39.52 -0.25 -1.45 16 19 Br -0.07 -0.78 33.70 -68.01 -2.29 -3.08 16 20 C -0.10 -1.36 9.44 -39.55 -0.37 -1.73 16 21 C -0.05 -0.69 5.88 -104.63 -0.62 -1.31 16 22 C -0.13 -2.10 9.26 36.00 0.33 -1.77 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.13 6.71 -51.92 -0.35 0.78 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.99 5.76 -51.93 -0.30 0.69 16 29 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 30 H 0.03 0.79 5.26 -51.93 -0.27 0.52 16 31 H -0.02 -0.38 7.71 -51.93 -0.40 -0.78 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.10 1.98 6.13 -51.93 -0.32 1.67 16 34 H 0.03 0.51 7.98 -51.93 -0.41 0.10 16 35 H 0.12 1.47 8.03 -52.49 -0.42 1.04 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.11 2.16 4.52 -51.93 -0.23 1.93 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -27.59 335.28 -10.38 -37.97 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.98 Total: 0.89 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -2.36 Total: -20.49 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.11 Total: -36.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.68 Total: 16.10 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.29 Total: -3.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.59 -10.38 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140817196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.314 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds