Wall clock time and date at job start Tue Mar 31 2020 14:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 N 1.46897 * 109.47148 * 181.73816 * 3 2 1 5 5 C 1.46905 * 111.00189 * 75.71858 * 4 3 2 6 6 C 1.50695 * 109.47345 * 195.57534 * 5 4 3 7 7 H 1.08003 * 119.99858 * 355.57827 * 6 5 4 8 8 C 1.37881 * 120.00174 * 175.58287 * 6 5 4 9 9 N 1.31511 * 119.99832 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99724 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46917 * 90.00500 * 10 8 6 12 12 H 1.48503 * 109.47095 * 210.00006 * 10 8 6 13 13 H 1.48503 * 109.47417 * 330.00327 * 10 8 6 14 14 C 1.46902 * 110.99896 * 199.66931 * 4 3 2 15 15 C 1.50700 * 109.47129 * 66.05070 * 14 4 3 16 16 C 1.38262 * 119.98561 * 259.72177 * 15 14 4 17 17 C 1.38206 * 120.00625 * 179.76154 * 16 15 14 18 18 C 1.38337 * 119.99026 * 0.51480 * 17 16 15 19 19 Br 1.89101 * 120.00944 * 179.76440 * 18 17 16 20 20 C 1.38308 * 119.97969 * 359.73664 * 18 17 16 21 21 C 1.38220 * 119.99032 * 79.99433 * 15 14 4 22 22 C 1.50690 * 119.99687 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46668 * 299.99503 * 1 2 3 25 25 H 1.09001 * 109.47180 * 59.99934 * 1 2 3 26 26 H 1.09007 * 109.47101 * 239.99959 * 2 1 3 27 27 H 1.08994 * 109.47248 * 120.00476 * 2 1 3 28 28 H 1.09002 * 109.47097 * 61.73696 * 3 2 1 29 29 H 1.09000 * 109.47198 * 301.73694 * 3 2 1 30 30 H 1.09005 * 109.46862 * 315.57546 * 5 4 3 31 31 H 1.08996 * 109.47055 * 75.57349 * 5 4 3 32 32 H 0.96997 * 119.99618 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.46901 * 186.04396 * 14 4 3 34 34 H 1.08996 * 109.47139 * 306.04680 * 14 4 3 35 35 H 1.07999 * 120.00003 * 0.02562 * 16 15 14 36 36 H 1.07996 * 120.00067 * 180.25643 * 17 16 15 37 37 H 1.08002 * 120.00470 * 180.02562 * 20 18 17 38 38 H 1.09002 * 109.47388 * 90.00068 * 22 21 15 39 39 H 1.09002 * 109.47202 * 209.99932 * 22 21 15 40 40 H 1.08997 * 109.47329 * 330.00001 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5084 1.4427 -0.0420 5 6 3.9966 1.1179 -1.3889 6 6 5.4569 0.7526 -1.3194 7 1 5.9888 0.8295 -0.3826 8 6 6.1141 0.3201 -2.4518 9 7 7.3884 0.0008 -2.3909 10 14 5.1940 0.1865 -4.0719 11 1 5.2950 1.4733 -4.8061 12 1 5.7899 -0.8991 -4.8915 13 1 3.7656 -0.1210 -3.8061 14 6 4.0480 2.7294 0.4174 15 6 3.7312 2.9139 1.8791 16 6 2.6710 3.7152 2.2607 17 6 2.3771 3.8807 3.6009 18 6 3.1503 3.2531 4.5611 19 35 2.7527 3.4845 6.3953 20 6 4.2139 2.4557 4.1791 21 6 4.5040 2.2865 2.8381 22 6 5.6635 1.4187 2.4218 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7023 1.9472 0.9052 29 1 1.6515 1.9652 -0.8740 30 1 3.4301 0.2763 -1.7876 31 1 3.8690 1.9827 -2.0400 32 1 7.8508 -0.3030 -3.1877 33 1 5.1286 2.7417 0.2756 34 1 3.5969 3.5385 -0.1571 35 1 2.0699 4.2085 1.5112 36 1 1.5464 4.5033 3.8987 37 1 4.8176 1.9652 4.9283 38 1 6.5660 2.0261 2.3538 39 1 5.8109 0.6305 3.1601 40 1 5.4523 0.9716 1.4504 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140817196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:20 Heat of formation + Delta-G solvation = 2.735211 kcal Electronic energy + Delta-G solvation = -20046.477409 eV Core-core repulsion = 17099.212578 eV Total energy + Delta-G solvation = -2947.264831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82328 -38.49390 -34.90642 -34.60837 -33.58115 -32.97744 -31.02272 -29.53460 -28.08705 -27.09162 -25.13740 -23.36474 -22.81117 -21.75234 -20.96378 -19.01731 -17.34615 -16.83395 -16.81966 -16.14170 -15.84363 -15.59002 -15.45838 -14.81179 -14.65736 -14.25059 -14.09499 -13.82130 -13.54528 -13.47010 -13.36870 -13.11298 -12.95650 -12.61304 -12.48680 -12.32105 -12.07910 -11.83550 -11.77598 -11.69336 -11.57454 -11.31303 -11.24211 -11.20132 -10.73028 -9.75856 -9.45254 -8.96546 -8.22180 -6.23399 0.12173 0.36905 0.64877 1.35242 1.37746 1.46668 2.37402 2.57600 3.10377 3.35683 3.79215 3.86238 3.97222 4.11619 4.20432 4.29989 4.33985 4.54130 4.57800 4.61810 4.66840 4.75310 4.79527 4.85916 4.92294 4.95275 5.01109 5.01569 5.11083 5.23306 5.23901 5.26579 5.35824 5.45808 5.50276 5.64416 5.76327 5.89423 6.08419 6.41180 6.70294 6.85799 7.39560 8.93438 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.003471 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.359654 B = 8064.504566 C = 8941.662976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.051 3.949 4 N -0.529 5.529 5 C 0.170 3.830 6 C -0.508 4.508 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.946 5.946 10 Si 0.935 3.065 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.251 1.251 14 C 0.100 3.900 15 C -0.065 4.065 16 C -0.106 4.106 17 C -0.097 4.097 18 C -0.095 4.095 19 Br -0.049 7.049 20 C -0.100 4.100 21 C -0.061 4.061 22 C -0.123 4.123 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.028 0.972 30 H 0.031 0.969 31 H -0.017 1.017 32 H 0.264 0.736 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 8.115 14.996 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.076 4.076 4 N -0.253 5.253 5 C 0.043 3.957 6 C -0.546 4.546 7 H 0.073 0.927 8 C -0.185 4.185 9 N -0.587 5.587 10 Si 0.759 3.241 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.175 1.175 14 C -0.027 4.027 15 C -0.066 4.066 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.175 4.175 19 Br 0.037 6.963 20 C -0.119 4.119 21 C -0.062 4.062 22 C -0.180 4.180 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.001 0.999 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.052 7.772 15.891 22.591 hybrid contribution 0.278 0.213 -1.926 1.958 sum -13.774 7.984 13.964 21.177 Atomic orbital electron populations 1.21676 0.93808 1.02208 1.02122 1.21462 0.96481 0.96228 1.01348 1.22248 0.87289 0.97456 1.00639 1.61846 1.07675 1.29856 1.25907 1.20012 0.94852 0.94641 0.86232 1.21369 0.94262 1.42701 0.96294 0.92668 1.25700 0.95427 0.95001 1.02371 1.70031 1.10952 1.47362 1.30391 0.85903 0.80052 0.78157 0.79952 1.19628 1.21182 1.17480 1.20899 1.00639 0.90350 0.90856 1.19926 0.95449 0.96397 0.94823 1.21230 0.96657 0.98423 0.96217 1.21220 0.99529 0.99229 0.91631 1.21828 1.00548 1.04120 0.90994 1.96668 1.94382 1.96850 1.08432 1.21080 0.96791 0.98414 0.95656 1.19827 0.97089 0.96890 0.92423 1.20918 0.95218 0.98473 1.03368 0.91979 0.91833 0.92540 0.93832 0.92555 0.89954 0.95336 0.95065 0.99905 0.92715 0.91281 0.94177 0.83649 0.83009 0.84396 0.91699 0.91123 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.91 71.98 0.71 -2.43 16 2 C -0.12 -3.53 6.07 30.59 0.19 -3.34 16 3 C 0.05 1.61 4.84 86.30 0.42 2.03 16 4 N -0.53 -20.45 3.72 -905.37 -3.36 -23.81 16 5 C 0.17 7.76 3.64 85.55 0.31 8.07 16 6 C -0.51 -27.88 9.08 25.60 0.23 -27.65 16 7 H 0.06 3.30 5.82 -2.91 -0.02 3.29 16 8 C 0.01 0.69 5.47 84.66 0.46 1.16 16 9 N -0.95 -57.73 13.96 21.45 0.30 -57.43 16 10 Si 0.93 43.25 27.56 68.60 1.89 45.14 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.25 -10.86 6.42 99.48 0.64 -10.22 16 14 C 0.10 3.56 4.06 85.56 0.35 3.90 16 15 C -0.07 -1.96 4.65 -19.86 -0.09 -2.06 16 16 C -0.11 -2.55 8.26 22.27 0.18 -2.37 16 17 C -0.10 -2.10 9.79 22.29 0.22 -1.88 16 18 C -0.10 -2.26 6.22 22.31 0.14 -2.12 16 19 Br -0.05 -0.98 33.70 -20.37 -0.69 -1.67 16 20 C -0.10 -2.63 9.44 22.29 0.21 -2.42 16 21 C -0.06 -1.87 5.88 -19.87 -0.12 -1.98 16 22 C -0.12 -4.19 9.26 71.23 0.66 -3.53 16 23 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 1.48 6.71 -2.38 -0.02 1.46 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 2.30 5.76 -2.39 -0.01 2.29 16 29 H 0.03 0.87 8.00 -2.39 -0.02 0.85 16 30 H 0.03 1.45 5.26 -2.38 -0.01 1.44 16 31 H -0.02 -0.76 7.71 -2.39 -0.02 -0.78 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.07 2.87 6.13 -2.39 -0.01 2.86 16 34 H 0.04 1.32 7.98 -2.39 -0.02 1.30 16 35 H 0.15 2.88 8.03 -2.91 -0.02 2.86 16 36 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.07 2.14 8.09 -2.39 -0.02 2.12 16 40 H 0.07 3.15 4.52 -2.39 -0.01 3.14 16 Total: -1.00 -60.92 335.28 2.97 -57.96 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.95 Total: 14.44 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 3.87 Total: -34.62 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.07 Total: -81.24 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.89 Total: 45.14 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -0.69 Total: -1.67 kcal Total: -60.92 2.97 -57.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140817196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.691 kcal (2) G-P(sol) polarization free energy of solvation -60.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds