Wall clock time and date at job start Tue Mar 31 2020 14:15:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52995 * 109.46837 * 2 1
4 4 C 1.53001 * 109.47339 * 180.02562 * 3 2 1
5 5 N 1.46499 * 109.47647 * 179.97438 * 4 3 2
6 6 C 1.36938 * 119.99996 * 282.05770 * 5 4 3
7 7 H 1.08004 * 119.99846 * 347.43170 * 6 5 4
8 8 C 1.38809 * 120.00169 * 167.43131 * 6 5 4
9 9 N 1.31616 * 120.00036 * 37.52933 * 8 6 5
10 10 Si 1.86798 * 120.00032 * 217.53235 * 8 6 5
11 11 H 1.48499 * 109.47106 * 90.00041 * 10 8 6
12 12 H 1.48497 * 109.47156 * 209.99778 * 10 8 6
13 13 H 1.48501 * 109.47138 * 330.00113 * 10 8 6
14 14 C 1.46494 * 120.00120 * 102.05081 * 5 4 3
15 15 C 1.50701 * 109.47631 * 267.74314 * 14 5 4
16 16 C 1.38259 * 119.98866 * 264.54087 * 15 14 5
17 17 C 1.38198 * 120.00616 * 179.76494 * 16 15 14
18 18 C 1.38342 * 119.99345 * 0.50664 * 17 16 15
19 19 Br 1.89100 * 120.01158 * 179.77099 * 18 17 16
20 20 C 1.38305 * 119.97731 * 359.74359 * 18 17 16
21 21 C 1.38222 * 119.98773 * 84.80738 * 15 14 5
22 22 C 1.50703 * 119.99612 * 0.02562 * 21 15 14
23 23 H 1.08994 * 109.47118 * 59.99913 * 1 2 3
24 24 H 1.09006 * 109.46696 * 179.97438 * 1 2 3
25 25 H 1.08995 * 109.47223 * 299.99373 * 1 2 3
26 26 H 1.09005 * 109.46733 * 240.00417 * 2 1 3
27 27 H 1.08994 * 109.47118 * 120.00087 * 2 1 3
28 28 H 1.09002 * 109.47181 * 59.99879 * 3 2 1
29 29 H 1.09003 * 109.47808 * 300.00366 * 3 2 1
30 30 H 1.09007 * 109.46888 * 59.96629 * 4 3 2
31 31 H 1.08996 * 109.46997 * 299.97237 * 4 3 2
32 32 H 0.97000 * 120.00461 * 182.23595 * 9 8 6
33 33 H 1.09006 * 109.46982 * 27.74311 * 14 5 4
34 34 H 1.09000 * 109.47404 * 147.74240 * 14 5 4
35 35 H 1.08001 * 119.99411 * 359.97438 * 16 15 14
36 36 H 1.08001 * 120.00019 * 180.25096 * 17 16 15
37 37 H 1.08004 * 120.00868 * 180.02562 * 20 18 17
38 38 H 1.08998 * 109.47041 * 99.08633 * 22 21 15
39 39 H 1.09000 * 109.46974 * 219.08705 * 22 21 15
40 40 H 1.08997 * 109.47151 * 339.08528 * 22 21 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4426 -0.0006
5 7 4.0583 2.8238 -0.0013
6 6 4.0525 3.5516 -1.1612
7 1 3.8842 3.0584 -2.1073
8 6 4.2629 4.9231 -1.1212
9 7 5.1294 5.4314 -0.2710
10 14 3.3160 6.0473 -2.2740
11 1 2.0513 6.4727 -1.6224
12 1 4.1390 7.2434 -2.5856
13 1 3.0049 5.3193 -3.5304
14 6 4.5527 3.4265 1.2391
15 6 3.4241 4.1437 1.9339
16 6 3.2471 5.5017 1.7436
17 6 2.2093 6.1588 2.3768
18 6 1.3537 5.4598 3.2094
19 35 -0.0626 6.3598 4.0812
20 6 1.5343 4.1024 3.4035
21 6 2.5695 3.4448 2.7656
22 6 2.7669 1.9659 2.9778
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3633 0.5137 0.8900
26 1 1.8933 -0.5138 -0.8901
27 1 1.8934 -0.5138 0.8899
28 1 1.6766 1.9563 0.8900
29 1 1.6766 1.9564 -0.8899
30 1 3.9330 0.9284 -0.8906
31 1 3.9337 0.9291 0.8893
32 1 5.2529 6.3922 -0.2203
33 1 4.9435 2.6458 1.8917
34 1 5.3462 4.1368 1.0068
35 1 3.9180 6.0482 1.0974
36 1 2.0687 7.2188 2.2249
37 1 0.8664 3.5561 4.0531
38 1 3.2948 1.8009 3.9170
39 1 1.7962 1.4714 3.0148
40 1 3.3524 1.5558 2.1550
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001140818158.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:15:34
Heat of formation + Delta-G solvation = 47.693680 kcal
Electronic energy + Delta-G solvation = -20868.960027 eV
Core-core repulsion = 17923.644741 eV
Total energy + Delta-G solvation = -2945.315286 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-39.08913 -36.42707 -34.31145 -32.74153 -31.60048 -30.98709 -29.39380 -28.14980
-26.38249 -25.29162 -23.77853 -21.71427 -21.00301 -20.36217 -19.55517 -17.11455
-15.65881 -15.30481 -15.05787 -14.54863 -14.18434 -13.75324 -13.56852 -13.53891
-13.03016 -12.67747 -12.59664 -12.40257 -12.00802 -11.92914 -11.61586 -11.33346
-11.20170 -10.87699 -10.69943 -10.58868 -10.47148 -10.41222 -10.25218 -10.09259
-9.90935 -9.86499 -9.76479 -9.68703 -8.53292 -8.09559 -7.69864 -6.98130
-5.92923 -3.20499 1.85529 2.04883 2.09855 3.36222 3.45229 3.50799
4.31253 4.47377 5.02590 5.28777 5.35998 5.38602 5.50249 5.55763
5.64857 5.72425 5.87397 5.92604 5.98985 6.05808 6.12741 6.15893
6.24159 6.29393 6.33853 6.39006 6.48743 6.56087 6.56653 6.68997
6.84722 6.91598 6.96948 7.15197 7.23314 7.49449 7.63166 7.71514
7.80889 8.33739 9.05911 9.73827 10.16581 10.98685
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.010833 B = 0.006058 C = 0.004685
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2584.063219 B = 4620.597887 C = 5974.875625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.122 4.122
3 C -0.145 4.145
4 C 0.148 3.852
5 N -0.587 5.587
6 C -0.242 4.242
7 H 0.080 0.920
8 C 0.009 3.991
9 N -0.874 5.874
10 Si 0.865 3.135
11 H -0.285 1.285
12 H -0.293 1.293
13 H -0.280 1.280
14 C 0.151 3.849
15 C -0.042 4.042
16 C -0.096 4.096
17 C -0.114 4.114
18 C -0.101 4.101
19 Br -0.087 7.087
20 C -0.108 4.108
21 C -0.087 4.087
22 C -0.127 4.127
23 H 0.051 0.949
24 H 0.045 0.955
25 H 0.050 0.950
26 H 0.055 0.945
27 H 0.054 0.946
28 H 0.065 0.935
29 H 0.059 0.941
30 H 0.038 0.962
31 H 0.048 0.952
32 H 0.256 0.744
33 H 0.024 0.976
34 H 0.144 0.856
35 H 0.163 0.837
36 H 0.115 0.885
37 H 0.115 0.885
38 H 0.057 0.943
39 H 0.057 0.943
40 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.700 -3.656 8.052 11.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.161 4.161
3 C -0.185 4.185
4 C 0.021 3.979
5 N -0.305 5.305
6 C -0.369 4.369
7 H 0.098 0.902
8 C -0.188 4.188
9 N -0.522 5.522
10 Si 0.694 3.306
11 H -0.212 1.212
12 H -0.220 1.220
13 H -0.205 1.205
14 C 0.025 3.975
15 C -0.045 4.045
16 C -0.115 4.115
17 C -0.134 4.134
18 C -0.180 4.180
19 Br -0.002 7.002
20 C -0.128 4.128
21 C -0.088 4.088
22 C -0.183 4.183
23 H 0.070 0.930
24 H 0.064 0.936
25 H 0.069 0.931
26 H 0.073 0.927
27 H 0.072 0.928
28 H 0.084 0.916
29 H 0.078 0.922
30 H 0.056 0.944
31 H 0.066 0.934
32 H 0.069 0.931
33 H 0.042 0.958
34 H 0.161 0.839
35 H 0.179 0.821
36 H 0.133 0.867
37 H 0.133 0.867
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -7.103 -3.200 8.320 11.398
hybrid contribution -0.780 0.611 -0.697 1.211
sum -7.883 -2.589 7.624 11.268
Atomic orbital electron populations
1.21756 0.96721 1.00527 1.01666 1.21507 0.95173 0.98345 1.01026
1.22351 0.98871 0.94553 1.02755 1.20970 0.91959 0.86364 0.98566
1.44092 1.71587 1.09638 1.05211 1.19185 1.42028 0.89288 0.86437
0.90224 1.24492 0.99400 0.96615 0.98260 1.69860 1.30473 1.11760
1.40081 0.86820 0.81908 0.80878 0.81009 1.21195 1.22025 1.20497
1.20852 0.95122 0.96571 0.84932 1.21022 0.97465 0.93867 0.92165
1.22329 0.96539 0.95534 0.97102 1.21146 0.95668 0.99472 0.97091
1.21515 0.97194 0.95212 1.04059 1.96535 1.46786 1.78268 1.78641
1.20705 0.98861 0.92233 1.01033 1.19796 0.95351 0.95848 0.97848
1.21199 1.02054 0.92317 1.02757 0.93020 0.93589 0.93076 0.92662
0.92760 0.91636 0.92189 0.94353 0.93382 0.93129 0.95795 0.83920
0.82054 0.86660 0.86679 0.92396 0.92415 0.89123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 37.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16
2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16
3 C -0.15 -2.53 4.99 -26.73 -0.13 -2.66 16
4 C 0.15 2.75 4.96 -4.04 -0.02 2.73 16
5 N -0.59 -13.11 2.56 -174.61 -0.45 -13.56 16
6 C -0.24 -6.06 9.48 -15.06 -0.14 -6.20 16
7 H 0.08 2.02 8.04 -52.48 -0.42 1.60 16
8 C 0.01 0.22 4.12 -17.43 -0.07 0.15 16
9 N -0.87 -21.96 7.81 55.49 0.43 -21.52 16
10 Si 0.86 20.52 29.68 -169.99 -5.05 15.47 16
11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16
12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
14 C 0.15 3.28 4.86 -5.20 -0.03 3.25 16
15 C -0.04 -0.88 5.38 -104.62 -0.56 -1.44 16
16 C -0.10 -2.07 8.77 -39.59 -0.35 -2.41 16
17 C -0.11 -2.24 9.79 -39.56 -0.39 -2.62 16
18 C -0.10 -1.84 6.22 -39.52 -0.25 -2.09 16
19 Br -0.09 -1.35 33.70 -68.01 -2.29 -3.64 16
20 C -0.11 -1.93 9.48 -39.56 -0.37 -2.30 16
21 C -0.09 -1.60 5.06 -104.63 -0.53 -2.13 16
22 C -0.13 -1.97 7.78 36.01 0.28 -1.69 16
23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
24 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16
25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.07 1.20 5.18 -51.93 -0.27 0.93 16
29 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16
30 H 0.04 0.72 8.13 -51.92 -0.42 0.30 16
31 H 0.05 0.81 5.69 -51.93 -0.30 0.52 16
32 H 0.26 6.27 7.80 -40.82 -0.32 5.95 16
33 H 0.02 0.48 6.59 -51.93 -0.34 0.14 16
34 H 0.14 3.50 5.00 -51.93 -0.26 3.24 16
35 H 0.16 3.73 4.50 -52.49 -0.24 3.50 16
36 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16
37 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16
38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16
39 H 0.06 0.82 7.95 -51.93 -0.41 0.40 16
40 H 0.09 1.46 2.30 -51.93 -0.12 1.34 16
LS Contribution 326.04 15.07 4.91 4.91
Total: -1.00 -24.86 326.04 -10.48 -35.35
By element:
Atomic # 1 Polarization: 9.50 SS G_CDS: -5.70 Total: 3.80 kcal
Atomic # 6 Polarization: -18.46 SS G_CDS: -2.35 Total: -20.81 kcal
Atomic # 7 Polarization: -35.07 SS G_CDS: -0.01 Total: -35.08 kcal
Atomic # 14 Polarization: 20.52 SS G_CDS: -5.05 Total: 15.47 kcal
Atomic # 35 Polarization: -1.35 SS G_CDS: -2.29 Total: -3.64 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -24.86 -10.48 -35.35 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001140818158.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.041 kcal
(2) G-P(sol) polarization free energy of solvation -24.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.176 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.694 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds