Wall clock time and date at job start Tue Mar 31 2020 14:15:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52995 * 109.46837 * 2 1
4 4 C 1.53001 * 109.47339 * 180.02562 * 3 2 1
5 5 N 1.46499 * 109.47647 * 179.97438 * 4 3 2
6 6 C 1.36938 * 119.99996 * 282.05770 * 5 4 3
7 7 H 1.08004 * 119.99846 * 347.43170 * 6 5 4
8 8 C 1.38809 * 120.00169 * 167.43131 * 6 5 4
9 9 N 1.31616 * 120.00036 * 37.52933 * 8 6 5
10 10 Si 1.86798 * 120.00032 * 217.53235 * 8 6 5
11 11 H 1.48499 * 109.47106 * 90.00041 * 10 8 6
12 12 H 1.48497 * 109.47156 * 209.99778 * 10 8 6
13 13 H 1.48501 * 109.47138 * 330.00113 * 10 8 6
14 14 C 1.46494 * 120.00120 * 102.05081 * 5 4 3
15 15 C 1.50701 * 109.47631 * 267.74314 * 14 5 4
16 16 C 1.38259 * 119.98866 * 264.54087 * 15 14 5
17 17 C 1.38198 * 120.00616 * 179.76494 * 16 15 14
18 18 C 1.38342 * 119.99345 * 0.50664 * 17 16 15
19 19 Br 1.89100 * 120.01158 * 179.77099 * 18 17 16
20 20 C 1.38305 * 119.97731 * 359.74359 * 18 17 16
21 21 C 1.38222 * 119.98773 * 84.80738 * 15 14 5
22 22 C 1.50703 * 119.99612 * 0.02562 * 21 15 14
23 23 H 1.08994 * 109.47118 * 59.99913 * 1 2 3
24 24 H 1.09006 * 109.46696 * 179.97438 * 1 2 3
25 25 H 1.08995 * 109.47223 * 299.99373 * 1 2 3
26 26 H 1.09005 * 109.46733 * 240.00417 * 2 1 3
27 27 H 1.08994 * 109.47118 * 120.00087 * 2 1 3
28 28 H 1.09002 * 109.47181 * 59.99879 * 3 2 1
29 29 H 1.09003 * 109.47808 * 300.00366 * 3 2 1
30 30 H 1.09007 * 109.46888 * 59.96629 * 4 3 2
31 31 H 1.08996 * 109.46997 * 299.97237 * 4 3 2
32 32 H 0.97000 * 120.00461 * 182.23595 * 9 8 6
33 33 H 1.09006 * 109.46982 * 27.74311 * 14 5 4
34 34 H 1.09000 * 109.47404 * 147.74240 * 14 5 4
35 35 H 1.08001 * 119.99411 * 359.97438 * 16 15 14
36 36 H 1.08001 * 120.00019 * 180.25096 * 17 16 15
37 37 H 1.08004 * 120.00868 * 180.02562 * 20 18 17
38 38 H 1.08998 * 109.47041 * 99.08633 * 22 21 15
39 39 H 1.09000 * 109.46974 * 219.08705 * 22 21 15
40 40 H 1.08997 * 109.47151 * 339.08528 * 22 21 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4426 -0.0006
5 7 4.0583 2.8238 -0.0013
6 6 4.0525 3.5516 -1.1612
7 1 3.8842 3.0584 -2.1073
8 6 4.2629 4.9231 -1.1212
9 7 5.1294 5.4314 -0.2710
10 14 3.3160 6.0473 -2.2740
11 1 2.0513 6.4727 -1.6224
12 1 4.1390 7.2434 -2.5856
13 1 3.0049 5.3193 -3.5304
14 6 4.5527 3.4265 1.2391
15 6 3.4241 4.1437 1.9339
16 6 3.2471 5.5017 1.7436
17 6 2.2093 6.1588 2.3768
18 6 1.3537 5.4598 3.2094
19 35 -0.0626 6.3598 4.0812
20 6 1.5343 4.1024 3.4035
21 6 2.5695 3.4448 2.7656
22 6 2.7669 1.9659 2.9778
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3633 0.5137 0.8900
26 1 1.8933 -0.5138 -0.8901
27 1 1.8934 -0.5138 0.8899
28 1 1.6766 1.9563 0.8900
29 1 1.6766 1.9564 -0.8899
30 1 3.9330 0.9284 -0.8906
31 1 3.9337 0.9291 0.8893
32 1 5.2529 6.3922 -0.2203
33 1 4.9435 2.6458 1.8917
34 1 5.3462 4.1368 1.0068
35 1 3.9180 6.0482 1.0974
36 1 2.0687 7.2188 2.2249
37 1 0.8664 3.5561 4.0531
38 1 3.2948 1.8009 3.9170
39 1 1.7962 1.4714 3.0148
40 1 3.3524 1.5558 2.1550
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001140818158.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:15:33
Heat of formation + Delta-G solvation = 39.012512 kcal
Electronic energy + Delta-G solvation = -20869.336471 eV
Core-core repulsion = 17923.644741 eV
Total energy + Delta-G solvation = -2945.691729 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.58728 -37.97121 -35.74198 -34.21809 -33.11931 -32.58576 -30.82163 -29.56963
-27.79821 -26.96633 -25.26645 -23.18256 -22.45664 -21.69436 -21.11239 -18.89919
-17.21276 -16.94242 -16.47400 -16.14543 -15.67345 -15.34960 -15.13344 -14.81838
-14.45193 -14.13142 -14.05177 -13.78572 -13.32877 -13.29002 -13.15300 -12.88654
-12.71908 -12.41496 -12.38308 -12.16832 -12.00082 -11.79657 -11.70631 -11.51443
-11.39657 -11.38333 -11.23882 -11.12450 -10.36647 -9.57076 -9.20416 -8.77816
-7.81953 -5.10469 0.36235 0.56461 0.69690 1.41391 1.50835 1.53707
2.51237 2.83976 3.12793 3.81895 3.98435 4.10176 4.21254 4.27766
4.38106 4.44403 4.48982 4.54546 4.59861 4.73747 4.83015 4.92612
4.93209 5.05562 5.09447 5.12765 5.15456 5.17056 5.25120 5.39110
5.44953 5.45979 5.56485 5.66997 5.71931 5.77569 5.80403 6.07392
6.18859 6.53487 7.18712 7.93610 8.31712 9.05142
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.010833 B = 0.006058 C = 0.004685
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2584.063219 B = 4620.597887 C = 5974.875625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.116 4.116
3 C -0.133 4.133
4 C 0.145 3.855
5 N -0.597 5.597
6 C -0.249 4.249
7 H 0.070 0.930
8 C -0.017 4.017
9 N -0.880 5.880
10 Si 0.899 3.101
11 H -0.299 1.299
12 H -0.297 1.297
13 H -0.280 1.280
14 C 0.156 3.844
15 C -0.060 4.060
16 C -0.120 4.120
17 C -0.126 4.126
18 C -0.106 4.106
19 Br -0.057 7.057
20 C -0.107 4.107
21 C -0.084 4.084
22 C -0.124 4.124
23 H 0.040 0.960
24 H 0.067 0.933
25 H 0.050 0.950
26 H 0.059 0.941
27 H 0.073 0.927
28 H 0.058 0.942
29 H 0.028 0.972
30 H 0.034 0.966
31 H 0.072 0.928
32 H 0.253 0.747
33 H 0.041 0.959
34 H 0.114 0.886
35 H 0.141 0.859
36 H 0.121 0.879
37 H 0.142 0.858
38 H 0.078 0.922
39 H 0.077 0.923
40 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.173 -5.413 9.666 13.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.154 4.154
3 C -0.173 4.173
4 C 0.020 3.980
5 N -0.316 5.316
6 C -0.378 4.378
7 H 0.087 0.913
8 C -0.213 4.213
9 N -0.527 5.527
10 Si 0.729 3.271
11 H -0.227 1.227
12 H -0.224 1.224
13 H -0.205 1.205
14 C 0.030 3.970
15 C -0.063 4.063
16 C -0.140 4.140
17 C -0.146 4.146
18 C -0.185 4.185
19 Br 0.028 6.972
20 C -0.126 4.126
21 C -0.086 4.086
22 C -0.180 4.180
23 H 0.060 0.940
24 H 0.086 0.914
25 H 0.069 0.931
26 H 0.078 0.922
27 H 0.092 0.908
28 H 0.076 0.924
29 H 0.047 0.953
30 H 0.052 0.948
31 H 0.090 0.910
32 H 0.065 0.935
33 H 0.059 0.941
34 H 0.131 0.869
35 H 0.158 0.842
36 H 0.139 0.861
37 H 0.160 0.840
38 H 0.097 0.903
39 H 0.095 0.905
40 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -8.579 -4.971 9.937 14.038
hybrid contribution -0.355 1.168 -1.142 1.672
sum -8.934 -3.803 8.795 13.101
Atomic orbital electron populations
1.21740 0.95782 1.01835 1.01172 1.21457 0.95947 0.95783 1.02215
1.22177 0.97658 0.96677 1.00796 1.21134 0.92816 0.84551 0.99465
1.44222 1.71968 1.10845 1.04585 1.19250 1.41645 0.89729 0.87197
0.91253 1.24765 1.00118 0.97222 0.99192 1.69979 1.30781 1.11478
1.40493 0.86280 0.80686 0.80041 0.80095 1.22678 1.22383 1.20527
1.20620 0.94883 0.96406 0.85063 1.20951 0.98111 0.93729 0.93528
1.22205 0.97426 0.96256 0.98083 1.21206 0.95778 0.99920 0.97660
1.21722 0.97528 0.95802 1.03458 1.96552 1.45007 1.77869 1.77818
1.21027 0.98751 0.92106 1.00764 1.20083 0.94544 0.97417 0.96564
1.21218 1.03297 0.90031 1.03417 0.94032 0.91368 0.93122 0.92221
0.90802 0.92365 0.95327 0.94776 0.91048 0.93487 0.94086 0.86935
0.84218 0.86119 0.83984 0.90303 0.90469 0.89922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16
2 C -0.12 -2.90 5.93 30.59 0.18 -2.71 16
3 C -0.13 -4.45 4.99 30.59 0.15 -4.30 16
4 C 0.15 5.25 4.96 86.38 0.43 5.67 16
5 N -0.60 -26.73 2.56 -706.34 -1.81 -28.53 16
6 C -0.25 -12.75 9.48 84.03 0.80 -11.95 16
7 H 0.07 3.61 8.04 -2.91 -0.02 3.58 16
8 C -0.02 -0.87 4.12 84.86 0.35 -0.52 16
9 N -0.88 -45.63 7.81 21.65 0.17 -45.46 16
10 Si 0.90 43.24 29.68 68.60 2.04 45.27 16
11 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16
12 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16
13 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16
14 C 0.16 6.78 4.86 85.63 0.42 7.20 16
15 C -0.06 -2.50 5.38 -19.86 -0.11 -2.60 16
16 C -0.12 -5.29 8.77 22.27 0.20 -5.09 16
17 C -0.13 -4.93 9.79 22.28 0.22 -4.72 16
18 C -0.11 -3.70 6.22 22.31 0.14 -3.56 16
19 Br -0.06 -1.65 33.70 -20.37 -0.69 -2.34 16
20 C -0.11 -3.51 9.48 22.29 0.21 -3.30 16
21 C -0.08 -2.95 5.06 -19.87 -0.10 -3.05 16
22 C -0.12 -3.40 7.78 71.24 0.55 -2.85 16
23 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16
24 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16
25 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16
26 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16
27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
28 H 0.06 2.02 5.18 -2.39 -0.01 2.01 16
29 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16
30 H 0.03 1.25 8.13 -2.38 -0.02 1.23 16
31 H 0.07 2.24 5.69 -2.39 -0.01 2.23 16
32 H 0.25 12.89 7.80 -92.71 -0.72 12.16 16
33 H 0.04 1.60 6.59 -2.38 -0.02 1.58 16
34 H 0.11 5.67 5.00 -2.39 -0.01 5.66 16
35 H 0.14 6.75 4.50 -2.91 -0.01 6.73 16
36 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16
37 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16
38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
39 H 0.08 1.84 7.95 -2.39 -0.02 1.82 16
40 H 0.08 2.41 2.30 -2.39 -0.01 2.41 16
Total: -1.00 -53.87 326.04 4.94 -48.93
By element:
Atomic # 1 Polarization: 15.50 SS G_CDS: 1.08 Total: 16.58 kcal
Atomic # 6 Polarization: -38.60 SS G_CDS: 4.15 Total: -34.45 kcal
Atomic # 7 Polarization: -72.36 SS G_CDS: -1.64 Total: -74.00 kcal
Atomic # 14 Polarization: 43.24 SS G_CDS: 2.04 Total: 45.27 kcal
Atomic # 35 Polarization: -1.65 SS G_CDS: -0.69 Total: -2.34 kcal
Total: -53.87 4.94 -48.93 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001140818158.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.944 kcal
(2) G-P(sol) polarization free energy of solvation -53.873 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.931 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.013 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds