Wall clock time and date at job start Tue Mar 31 2020 13:59:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13607 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.37142 * 123.60320 * 165.83756 * 3 2 1
5 5 N 1.38391 * 124.65298 * 359.97438 * 4 3 2
6 6 S 1.70440 * 110.69403 * 179.71222 * 4 3 2
7 7 C 1.75453 * 92.55239 * 0.33083 * 6 4 3
8 8 C 1.50705 * 124.58705 * 179.97438 * 7 6 4
9 9 N 1.46899 * 109.46990 * 269.70006 * 8 7 6
10 10 C 1.46847 * 110.99862 * 170.00184 * 9 8 7
11 11 C 1.53044 * 109.51335 * 174.15436 * 10 9 8
12 12 C 1.53119 * 109.27589 * 59.18419 * 11 10 9
13 13 C 1.50703 * 109.51728 * 182.37636 * 12 11 10
14 14 H 1.08001 * 120.00215 * 0.02562 * 13 12 11
15 15 C 1.37880 * 119.99699 * 179.97438 * 13 12 11
16 16 N 1.31509 * 119.99840 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 119.99766 * 179.97438 * 15 13 12
18 18 H 1.48497 * 109.46978 * 90.00182 * 17 15 13
19 19 H 1.48501 * 109.46964 * 210.00444 * 17 15 13
20 20 H 1.48501 * 109.47042 * 330.00160 * 17 15 13
21 21 C 1.53120 * 109.16202 * 302.34077 * 12 11 10
22 22 C 1.46847 * 110.99299 * 45.79343 * 9 8 7
23 23 C 1.32589 * 110.82656 * 359.66770 * 7 6 4
24 24 Cl 1.73594 * 123.43086 * 180.24563 * 23 7 6
25 25 H 0.96997 * 120.00218 * 359.97438 * 5 4 3
26 26 H 0.96999 * 119.99982 * 179.97438 * 5 4 3
27 27 H 1.09002 * 109.46547 * 149.69995 * 8 7 6
28 28 H 1.08997 * 109.46818 * 29.69897 * 8 7 6
29 29 H 1.09002 * 109.46448 * 54.14158 * 10 9 8
30 30 H 1.08994 * 109.45958 * 294.16523 * 10 9 8
31 31 H 1.09000 * 109.49745 * 179.12223 * 11 10 9
32 32 H 1.08999 * 109.49729 * 299.20033 * 11 10 9
33 33 H 1.08993 * 109.52284 * 62.25342 * 12 11 10
34 34 H 0.97004 * 119.99580 * 179.97438 * 16 15 13
35 35 H 1.08996 * 109.50328 * 177.59853 * 21 12 11
36 36 H 1.09004 * 109.50202 * 297.68149 * 21 12 11
37 37 H 1.09005 * 109.46836 * 65.83946 * 22 9 8
38 38 H 1.08995 * 109.45748 * 305.85482 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.5681 0.0006 0.0000
4 6 3.3266 1.1085 -0.2795
5 7 2.8133 2.3545 -0.5945
6 16 4.9881 0.7420 -0.1785
7 6 4.6734 -0.9332 0.2373
8 6 5.7406 -1.9644 0.5000
9 7 6.0893 -2.6394 -0.7573
10 6 7.2830 -3.4782 -0.5907
11 6 7.5305 -4.2756 -1.8734
12 6 7.7245 -3.3055 -3.0421
13 6 7.9107 -4.0854 -4.3182
14 1 7.8922 -5.1651 -4.2988
15 6 8.1035 -3.4204 -5.5105
16 7 8.1255 -2.1057 -5.5341
17 14 8.3350 -4.3871 -7.0922
18 1 7.0128 -4.6249 -7.7249
19 1 9.1973 -3.6149 -8.0225
20 1 8.9790 -5.6898 -6.7864
21 6 6.4877 -2.4110 -3.1634
22 6 6.2704 -1.6677 -1.8434
23 6 3.3697 -1.1676 0.2956
24 17 2.6932 -2.7177 0.6869
25 1 1.8534 2.4890 -0.6293
26 1 3.4136 3.0934 -0.7804
27 1 5.3686 -2.6980 1.2152
28 1 6.6255 -1.4757 0.9076
29 1 7.1303 -4.1662 0.2408
30 1 8.1459 -2.8451 -0.3845
31 1 8.4255 -4.8864 -1.7551
32 1 6.6740 -4.9196 -2.0724
33 1 8.6043 -2.6882 -2.8609
34 1 8.2615 -1.6379 -6.3730
35 1 6.6376 -1.6897 -3.9667
36 1 5.6146 -3.0252 -3.3839
37 1 7.1382 -1.0432 -1.6312
38 1 5.3822 -1.0409 -1.9216
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001141111856.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:59:35
Heat of formation + Delta-G solvation = 49.835285 kcal
Electronic energy + Delta-G solvation = -22669.202862 eV
Core-core repulsion = 19277.620656 eV
Total energy + Delta-G solvation = -3391.582205 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.071 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.11043 -38.15194 -36.61503 -35.94558 -34.96724 -33.59684 -31.55746 -29.80015
-29.14813 -26.17493 -24.71153 -24.13009 -22.23468 -21.61582 -20.01267 -18.71709
-18.51943 -18.33746 -16.39749 -16.06019 -15.66763 -15.54024 -14.76691 -14.58801
-14.34296 -13.95466 -13.84594 -13.14109 -12.94963 -12.91557 -12.74038 -12.46170
-12.44112 -12.17885 -11.84699 -11.83790 -11.46703 -11.20139 -10.92237 -10.83998
-10.72234 -10.44076 -10.34914 -10.18258 -9.95562 -9.40709 -8.93755 -8.74627
-8.44170 -8.25275 -8.04659 -7.69001 -5.94931 -3.99439 0.70095 0.82488
1.28151 1.66534 2.32325 2.67407 3.33513 3.36898 3.38860 3.40134
3.43509 4.01162 4.47020 4.50770 4.73008 4.97812 5.28257 5.35886
5.45010 5.72840 5.75232 5.85146 5.92838 6.11837 6.20356 6.33033
6.49256 6.62681 6.65306 6.88168 6.91367 7.10233 7.18401 7.45469
7.51909 7.62234 7.67451 7.85072 8.08552 8.18800 8.51788 9.04078
9.64811 11.11233
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.015585 B = 0.003612 C = 0.003432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1796.213996 B = 7750.613795 C = 8157.127160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.435 5.435
2 C 0.288 3.712
3 C -0.176 4.176
4 C 0.148 3.852
5 N -0.822 5.822
6 S 0.233 5.767
7 C -0.205 4.205
8 C 0.127 3.873
9 N -0.525 5.525
10 C 0.061 3.939
11 C -0.106 4.106
12 C 0.048 3.952
13 C -0.509 4.509
14 H 0.054 0.946
15 C 0.061 3.939
16 N -0.892 5.892
17 Si 0.888 3.112
18 H -0.281 1.281
19 H -0.288 1.288
20 H -0.275 1.275
21 C -0.102 4.102
22 C 0.051 3.949
23 C 0.040 3.960
24 Cl -0.025 7.025
25 H 0.409 0.591
26 H 0.412 0.588
27 H 0.094 0.906
28 H 0.043 0.957
29 H 0.059 0.941
30 H 0.025 0.975
31 H 0.050 0.950
32 H 0.058 0.942
33 H 0.020 0.980
34 H 0.258 0.742
35 H 0.092 0.908
36 H 0.043 0.957
37 H 0.022 0.978
38 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.875 9.497 14.199 18.064
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.113 5.113
2 C -0.027 4.027
3 C -0.198 4.198
4 C -0.083 4.083
5 N -0.363 5.363
6 S 0.490 5.510
7 C -0.324 4.324
8 C -0.003 4.003
9 N -0.251 5.251
10 C -0.066 4.066
11 C -0.144 4.144
12 C 0.030 3.970
13 C -0.547 4.547
14 H 0.072 0.928
15 C -0.139 4.139
16 N -0.532 5.532
17 Si 0.716 3.284
18 H -0.208 1.208
19 H -0.214 1.214
20 H -0.200 1.200
21 C -0.141 4.141
22 C -0.076 4.076
23 C 0.000 4.000
24 Cl 0.003 6.997
25 H 0.240 0.760
26 H 0.243 0.757
27 H 0.112 0.888
28 H 0.061 0.939
29 H 0.078 0.922
30 H 0.043 0.957
31 H 0.068 0.932
32 H 0.076 0.924
33 H 0.038 0.962
34 H 0.068 0.932
35 H 0.110 0.890
36 H 0.062 0.938
37 H 0.040 0.960
38 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -6.761 9.996 13.789 18.324
hybrid contribution -0.376 -0.502 -0.664 0.913
sum -7.137 9.495 13.125 17.702
Atomic orbital electron populations
1.81235 1.11505 1.06945 1.11607 1.24633 0.91387 0.94013 0.92710
1.15269 0.85650 0.92857 1.26038 1.21715 1.00154 0.89220 0.97251
1.41611 1.10836 1.07137 1.76723 1.83552 0.95488 1.02818 1.69165
1.23551 0.96706 0.98301 1.13834 1.20602 0.93122 0.92519 0.94023
1.62204 1.36914 1.22562 1.03401 1.22140 0.89472 0.95624 0.99406
1.21673 1.00053 0.98521 0.94123 1.18683 0.93721 0.92782 0.91858
1.21218 1.48409 0.92901 0.92189 0.92797 1.24944 0.95312 0.94827
0.98830 1.69871 1.50574 1.06493 1.26224 0.86665 0.78021 0.80096
0.83627 1.20760 1.21385 1.20011 1.21643 0.98945 0.99886 0.93590
1.22460 0.98315 0.93614 0.93217 1.19933 0.90667 0.87054 1.02388
1.98383 1.84866 1.24577 1.91832 0.75986 0.75718 0.88805 0.93917
0.92204 0.95652 0.93155 0.92369 0.96173 0.93187 0.89008 0.93789
0.95986 0.92212
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.44 -6.50 18.54 41.84 0.78 -5.72 16
2 C 0.29 3.86 14.60 -22.47 -0.33 3.54 16
3 C -0.18 -2.14 5.89 -105.80 -0.62 -2.76 16
4 C 0.15 1.43 7.35 -14.99 -0.11 1.32 16
5 N -0.82 -5.33 9.04 30.98 0.28 -5.05 16
6 S 0.23 2.27 21.37 -107.50 -2.30 -0.03 16
7 C -0.21 -2.53 4.36 -36.21 -0.16 -2.69 16
8 C 0.13 1.64 5.45 -4.97 -0.03 1.62 16
9 N -0.53 -8.65 4.80 -236.11 -1.13 -9.78 16
10 C 0.06 1.02 5.43 -3.83 -0.02 1.00 16
11 C -0.11 -2.14 5.32 -26.65 -0.14 -2.28 16
12 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16
13 C -0.51 -13.75 8.57 -34.44 -0.29 -14.05 16
14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16
15 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16
16 N -0.89 -24.89 11.37 55.43 0.63 -24.26 16
17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16
18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
21 C -0.10 -2.34 5.12 -26.65 -0.14 -2.47 16
22 C 0.05 0.94 4.68 -3.83 -0.02 0.92 16
23 C 0.04 0.51 6.48 -38.92 -0.25 0.26 16
24 Cl -0.03 -0.34 27.83 -51.86 -1.44 -1.79 16
25 H 0.41 2.49 8.28 -40.82 -0.34 2.15 16
26 H 0.41 1.60 8.95 -40.82 -0.37 1.23 16
27 H 0.09 1.14 7.49 -51.93 -0.39 0.75 16
28 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16
29 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16
30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16
33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16
35 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16
36 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16
37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
38 H 0.06 1.02 5.53 -51.93 -0.29 0.73 16
LS Contribution 342.06 15.07 5.15 5.15
Total: -1.00 -30.04 342.06 -10.08 -40.12
By element:
Atomic # 1 Polarization: 2.91 SS G_CDS: -4.62 Total: -1.70 kcal
Atomic # 6 Polarization: -10.65 SS G_CDS: -2.40 Total: -13.06 kcal
Atomic # 7 Polarization: -45.37 SS G_CDS: 0.55 Total: -44.81 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: 2.27 SS G_CDS: -2.30 Total: -0.03 kcal
Atomic # 17 Polarization: -0.34 SS G_CDS: -1.44 Total: -1.79 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -30.04 -10.08 -40.12 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141111856.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.953 kcal
(2) G-P(sol) polarization free energy of solvation -30.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds