Wall clock time and date at job start Tue Mar 31 2020 13:59:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13607 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.37142 * 123.60320 * 165.83756 * 3 2 1
5 5 N 1.38391 * 124.65298 * 359.97438 * 4 3 2
6 6 S 1.70440 * 110.69403 * 179.71222 * 4 3 2
7 7 C 1.75453 * 92.55239 * 0.33083 * 6 4 3
8 8 C 1.50705 * 124.58705 * 179.97438 * 7 6 4
9 9 N 1.46899 * 109.46990 * 269.70006 * 8 7 6
10 10 C 1.46847 * 110.99862 * 170.00184 * 9 8 7
11 11 C 1.53044 * 109.51335 * 174.15436 * 10 9 8
12 12 C 1.53119 * 109.27589 * 59.18419 * 11 10 9
13 13 C 1.50703 * 109.51728 * 182.37636 * 12 11 10
14 14 H 1.08001 * 120.00215 * 0.02562 * 13 12 11
15 15 C 1.37880 * 119.99699 * 179.97438 * 13 12 11
16 16 N 1.31509 * 119.99840 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 119.99766 * 179.97438 * 15 13 12
18 18 H 1.48497 * 109.46978 * 90.00182 * 17 15 13
19 19 H 1.48501 * 109.46964 * 210.00444 * 17 15 13
20 20 H 1.48501 * 109.47042 * 330.00160 * 17 15 13
21 21 C 1.53120 * 109.16202 * 302.34077 * 12 11 10
22 22 C 1.46847 * 110.99299 * 45.79343 * 9 8 7
23 23 C 1.32589 * 110.82656 * 359.66770 * 7 6 4
24 24 Cl 1.73594 * 123.43086 * 180.24563 * 23 7 6
25 25 H 0.96997 * 120.00218 * 359.97438 * 5 4 3
26 26 H 0.96999 * 119.99982 * 179.97438 * 5 4 3
27 27 H 1.09002 * 109.46547 * 149.69995 * 8 7 6
28 28 H 1.08997 * 109.46818 * 29.69897 * 8 7 6
29 29 H 1.09002 * 109.46448 * 54.14158 * 10 9 8
30 30 H 1.08994 * 109.45958 * 294.16523 * 10 9 8
31 31 H 1.09000 * 109.49745 * 179.12223 * 11 10 9
32 32 H 1.08999 * 109.49729 * 299.20033 * 11 10 9
33 33 H 1.08993 * 109.52284 * 62.25342 * 12 11 10
34 34 H 0.97004 * 119.99580 * 179.97438 * 16 15 13
35 35 H 1.08996 * 109.50328 * 177.59853 * 21 12 11
36 36 H 1.09004 * 109.50202 * 297.68149 * 21 12 11
37 37 H 1.09005 * 109.46836 * 65.83946 * 22 9 8
38 38 H 1.08995 * 109.45748 * 305.85482 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.5681 0.0006 0.0000
4 6 3.3266 1.1085 -0.2795
5 7 2.8133 2.3545 -0.5945
6 16 4.9881 0.7420 -0.1785
7 6 4.6734 -0.9332 0.2373
8 6 5.7406 -1.9644 0.5000
9 7 6.0893 -2.6394 -0.7573
10 6 7.2830 -3.4782 -0.5907
11 6 7.5305 -4.2756 -1.8734
12 6 7.7245 -3.3055 -3.0421
13 6 7.9107 -4.0854 -4.3182
14 1 7.8922 -5.1651 -4.2988
15 6 8.1035 -3.4204 -5.5105
16 7 8.1255 -2.1057 -5.5341
17 14 8.3350 -4.3871 -7.0922
18 1 7.0128 -4.6249 -7.7249
19 1 9.1973 -3.6149 -8.0225
20 1 8.9790 -5.6898 -6.7864
21 6 6.4877 -2.4110 -3.1634
22 6 6.2704 -1.6677 -1.8434
23 6 3.3697 -1.1676 0.2956
24 17 2.6932 -2.7177 0.6869
25 1 1.8534 2.4890 -0.6293
26 1 3.4136 3.0934 -0.7804
27 1 5.3686 -2.6980 1.2152
28 1 6.6255 -1.4757 0.9076
29 1 7.1303 -4.1662 0.2408
30 1 8.1459 -2.8451 -0.3845
31 1 8.4255 -4.8864 -1.7551
32 1 6.6740 -4.9196 -2.0724
33 1 8.6043 -2.6882 -2.8609
34 1 8.2615 -1.6379 -6.3730
35 1 6.6376 -1.6897 -3.9667
36 1 5.6146 -3.0252 -3.3839
37 1 7.1382 -1.0432 -1.6312
38 1 5.3822 -1.0409 -1.9216
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001141111856.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:59:35
Heat of formation + Delta-G solvation = 30.862738 kcal
Electronic energy + Delta-G solvation = -22670.025573 eV
Core-core repulsion = 19277.620656 eV
Total energy + Delta-G solvation = -3392.404917 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.071 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.18238 -39.38567 -37.61473 -36.95226 -36.19440 -34.99447 -33.21582 -31.37431
-30.34611 -27.73086 -25.70890 -25.44585 -23.76164 -23.14548 -21.08165 -20.15655
-19.48689 -19.20365 -18.37637 -16.98259 -16.85010 -16.51842 -16.33946 -15.88750
-15.49889 -15.15528 -15.01471 -14.70135 -14.33161 -14.21040 -14.03897 -13.81734
-13.73442 -13.20459 -13.11088 -13.04346 -12.86701 -12.79936 -12.54226 -12.19253
-12.15783 -11.91827 -11.80741 -11.73937 -11.28111 -11.24334 -10.71733 -10.55652
-10.30492 -9.34394 -9.08565 -8.73214 -8.02476 -6.14058 -0.13664 0.00580
0.39982 0.69957 1.39471 1.42972 1.44738 1.53574 1.67891 2.39191
2.47832 2.69418 3.08355 3.22943 3.26093 3.76612 4.09626 4.29453
4.36650 4.41112 4.49472 4.58678 4.69437 4.83676 4.89388 4.99587
5.02718 5.08853 5.21658 5.33306 5.44190 5.66253 5.70784 5.83140
6.09976 6.12229 6.38021 6.40446 6.42218 6.49569 6.54134 6.97356
7.52884 9.01677
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.015585 B = 0.003612 C = 0.003432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1796.213996 B = 7750.613795 C = 8157.127160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.473 5.473
2 C 0.302 3.698
3 C -0.209 4.209
4 C 0.167 3.833
5 N -0.802 5.802
6 S 0.279 5.721
7 C -0.228 4.228
8 C 0.129 3.871
9 N -0.537 5.537
10 C 0.068 3.932
11 C -0.100 4.100
12 C 0.045 3.955
13 C -0.532 4.532
14 H 0.046 0.954
15 C 0.016 3.984
16 N -0.914 5.914
17 Si 0.945 3.055
18 H -0.280 1.280
19 H -0.283 1.283
20 H -0.271 1.271
21 C -0.094 4.094
22 C 0.067 3.933
23 C 0.036 3.964
24 Cl -0.039 7.039
25 H 0.414 0.586
26 H 0.428 0.572
27 H 0.104 0.896
28 H 0.062 0.938
29 H 0.089 0.911
30 H 0.031 0.969
31 H 0.052 0.948
32 H 0.046 0.954
33 H -0.006 1.006
34 H 0.259 0.741
35 H 0.061 0.939
36 H 0.022 0.978
37 H 0.024 0.976
38 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.513 10.537 15.109 19.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.151 5.151
2 C -0.012 4.012
3 C -0.230 4.230
4 C -0.068 4.068
5 N -0.343 5.343
6 S 0.535 5.465
7 C -0.346 4.346
8 C 0.001 3.999
9 N -0.263 5.263
10 C -0.060 4.060
11 C -0.138 4.138
12 C 0.027 3.973
13 C -0.571 4.571
14 H 0.065 0.935
15 C -0.182 4.182
16 N -0.553 5.553
17 Si 0.772 3.228
18 H -0.206 1.206
19 H -0.209 1.209
20 H -0.195 1.195
21 C -0.132 4.132
22 C -0.061 4.061
23 C -0.004 4.004
24 Cl -0.011 7.011
25 H 0.246 0.754
26 H 0.262 0.738
27 H 0.121 0.879
28 H 0.080 0.920
29 H 0.108 0.892
30 H 0.049 0.951
31 H 0.071 0.929
32 H 0.065 0.935
33 H 0.012 0.988
34 H 0.068 0.932
35 H 0.079 0.921
36 H 0.041 0.959
37 H 0.042 0.958
38 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -6.407 11.064 14.707 19.487
hybrid contribution -0.448 -0.733 -0.965 1.292
sum -6.855 10.331 13.742 18.508
Atomic orbital electron populations
1.81240 1.12463 1.08028 1.13398 1.24824 0.91594 0.93072 0.91679
1.15248 0.84999 0.93648 1.29092 1.21812 1.00328 0.89516 0.95131
1.41739 1.11665 1.06489 1.74449 1.83432 0.94376 1.00495 1.68244
1.23596 0.96270 0.99877 1.14877 1.20614 0.94042 0.93067 0.92191
1.62085 1.36729 1.22719 1.04734 1.22051 0.89938 0.95915 0.98075
1.21535 0.99678 0.97947 0.94627 1.18655 0.93055 0.93208 0.92424
1.21611 1.48594 0.92926 0.93938 0.93527 1.25634 0.95195 0.95735
1.01658 1.69991 1.50972 1.07545 1.26839 0.85755 0.77924 0.78998
0.80154 1.20564 1.20850 1.19548 1.21395 0.97329 0.98913 0.95579
1.22167 0.98952 0.93380 0.91566 1.20056 0.91091 0.86721 1.02514
1.98375 1.85131 1.25587 1.91958 0.75374 0.73848 0.87850 0.91976
0.89238 0.95091 0.92915 0.93520 0.98827 0.93172 0.92068 0.95917
0.95780 0.90881
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.47 -14.00 18.54 19.01 0.35 -13.65 16
2 C 0.30 7.89 14.60 88.33 1.29 9.18 16
3 C -0.21 -4.73 5.89 -20.63 -0.12 -4.85 16
4 C 0.17 2.79 7.35 83.40 0.61 3.40 16
5 N -0.80 -8.05 9.04 -55.91 -0.51 -8.56 16
6 S 0.28 4.59 21.37 -56.49 -1.21 3.39 16
7 C -0.23 -5.09 4.36 24.53 0.11 -4.98 16
8 C 0.13 3.01 5.45 85.56 0.47 3.48 16
9 N -0.54 -16.72 4.80 -900.91 -4.32 -21.04 16
10 C 0.07 2.12 5.43 86.33 0.47 2.59 16
11 C -0.10 -4.01 5.32 30.65 0.16 -3.84 16
12 C 0.05 2.21 2.16 -11.46 -0.02 2.19 16
13 C -0.53 -29.38 8.57 25.60 0.22 -29.16 16
14 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16
15 C 0.02 0.90 5.31 84.66 0.45 1.35 16
16 N -0.91 -51.80 11.37 21.45 0.24 -51.56 16
17 Si 0.95 43.71 29.54 68.60 2.03 45.74 16
18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
21 C -0.09 -4.35 5.12 30.65 0.16 -4.19 16
22 C 0.07 2.38 4.68 86.33 0.40 2.78 16
23 C 0.04 0.89 6.48 22.77 0.15 1.04 16
24 Cl -0.04 -1.03 27.83 -2.72 -0.08 -1.11 16
25 H 0.41 3.97 8.28 -92.71 -0.77 3.20 16
26 H 0.43 1.82 8.95 -92.71 -0.83 0.99 16
27 H 0.10 2.23 7.49 -2.39 -0.02 2.21 16
28 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16
29 H 0.09 2.31 8.12 -2.39 -0.02 2.30 16
30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16
31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16
34 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16
35 H 0.06 3.20 6.17 -2.39 -0.01 3.18 16
36 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16
37 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16
38 H 0.07 2.37 5.53 -2.39 -0.01 2.36 16
Total: -1.00 -66.18 342.06 0.38 -65.81
By element:
Atomic # 1 Polarization: 2.48 SS G_CDS: -0.47 Total: 2.00 kcal
Atomic # 6 Polarization: -25.36 SS G_CDS: 4.34 Total: -21.02 kcal
Atomic # 7 Polarization: -90.57 SS G_CDS: -4.23 Total: -94.81 kcal
Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal
Atomic # 16 Polarization: 4.59 SS G_CDS: -1.21 Total: 3.39 kcal
Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal
Total: -66.18 0.38 -65.81 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141111856.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.670 kcal
(2) G-P(sol) polarization free energy of solvation -66.184 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.486 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.807 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.863 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds