Wall clock time and date at job start Tue Mar 31 2020 13:56:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13601 * 1
3 3 C 1.43196 * 179.97438 * 2 1
4 4 C 1.37147 * 123.61012 * 320.79018 * 3 2 1
5 5 N 1.38394 * 124.64957 * 0.03847 * 4 3 2
6 6 S 1.70439 * 110.69830 * 180.02562 * 4 3 2
7 7 C 1.75453 * 92.55291 * 0.02562 * 6 4 3
8 8 C 1.50697 * 124.58909 * 179.97438 * 7 6 4
9 9 N 1.46900 * 109.47358 * 270.02923 * 8 7 6
10 10 C 1.46844 * 110.99734 * 293.94784 * 9 8 7
11 11 C 1.53044 * 109.52351 * 174.16205 * 10 9 8
12 12 C 1.53114 * 109.27620 * 59.18200 * 11 10 9
13 13 C 1.53122 * 109.15993 * 302.34480 * 12 11 10
14 14 H 1.09000 * 109.50351 * 297.67604 * 13 12 11
15 15 C 1.50708 * 109.50127 * 177.59814 * 13 12 11
16 16 H 1.07991 * 119.99789 * 240.00607 * 15 13 12
17 17 C 1.37877 * 120.00008 * 59.99918 * 15 13 12
18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 13
19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 13
20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15
21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15
22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15
23 23 C 1.46847 * 110.99870 * 169.74413 * 9 8 7
24 24 C 1.32582 * 110.82665 * 0.26418 * 7 6 4
25 25 Cl 1.73607 * 123.43271 * 179.73503 * 24 7 6
26 26 H 0.97001 * 120.00057 * 179.97438 * 5 4 3
27 27 H 0.97000 * 119.99807 * 359.97438 * 5 4 3
28 28 H 1.09006 * 109.47385 * 150.02620 * 8 7 6
29 29 H 1.09003 * 109.47091 * 30.02568 * 8 7 6
30 30 H 1.09006 * 109.45970 * 54.15049 * 10 9 8
31 31 H 1.08997 * 109.46162 * 294.17118 * 10 9 8
32 32 H 1.09005 * 109.50098 * 299.23981 * 11 10 9
33 33 H 1.08999 * 109.53764 * 179.14860 * 11 10 9
34 34 H 1.09008 * 109.52033 * 182.44299 * 12 11 10
35 35 H 1.08993 * 109.57636 * 62.28390 * 12 11 10
36 36 H 0.96997 * 119.99848 * 180.02562 * 18 17 15
37 37 H 1.09000 * 109.46702 * 65.82562 * 23 9 8
38 38 H 1.09003 * 109.46567 * 305.85129 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3275 -0.8840 0.7220
5 7 2.8154 -1.8808 1.5341
6 16 4.9887 -0.5877 0.4818
7 6 4.6726 0.7501 -0.6084
8 6 5.7388 1.5765 -1.2802
9 7 6.0844 2.7194 -0.4244
10 6 4.9514 3.6453 -0.3001
11 6 5.2960 4.7425 0.7096
12 6 6.5430 5.4932 0.2344
13 6 7.6949 4.4985 0.0666
14 1 7.9280 4.0456 1.0303
15 6 8.9101 5.2197 -0.4574
16 1 9.3459 4.9278 -1.4014
17 6 9.4652 6.2523 0.2683
18 7 10.5253 6.8820 -0.1891
19 14 8.7116 6.7568 1.9014
20 1 7.6833 7.8029 1.6700
21 1 9.7724 7.2936 2.7913
22 1 8.0800 5.5749 2.5414
23 6 7.2808 3.4084 -0.9245
24 6 3.3688 0.9397 -0.7564
25 17 2.6909 2.1838 -1.7596
26 1 3.4163 -2.4709 2.0154
27 1 1.8555 -1.9893 1.6220
28 1 5.3672 1.9394 -2.2385
29 1 6.6252 0.9633 -1.4428
30 1 4.0723 3.0995 0.0425
31 1 4.7434 4.0968 -1.2701
32 1 5.4908 4.2929 1.6833
33 1 4.4610 5.4384 0.7908
34 1 6.8174 6.2473 0.9723
35 1 6.3367 5.9762 -0.7206
36 1 10.9161 7.6081 0.3216
37 1 7.0617 3.8611 -1.8915
38 1 8.0937 2.6907 -1.0354
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001141114273.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:56:49
Heat of formation + Delta-G solvation = 56.478347 kcal
Electronic energy + Delta-G solvation = -22722.784353 eV
Core-core repulsion = 19331.490212 eV
Total energy + Delta-G solvation = -3391.294141 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.071 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-39.28161 -38.30115 -36.78236 -36.05516 -35.09846 -33.52779 -32.08348 -30.29428
-29.37944 -25.72882 -24.89217 -24.73003 -22.48170 -21.26145 -20.36826 -18.86403
-18.70082 -18.41956 -16.71966 -16.15211 -15.83902 -15.76593 -14.96941 -14.69133
-14.36776 -14.11350 -13.67692 -13.54880 -13.18649 -12.98244 -12.96615 -12.79745
-12.49398 -12.33651 -12.23208 -12.01825 -11.57427 -11.37471 -11.12468 -11.02906
-10.85511 -10.53401 -10.43358 -10.05104 -9.93684 -9.67055 -9.08744 -8.90493
-8.64516 -8.49603 -8.12317 -7.81813 -6.05356 -4.04422 0.62604 0.75733
1.20679 1.54048 2.19406 2.57238 3.27557 3.28685 3.30988 3.41850
3.45044 3.90988 4.38664 4.44449 4.67507 4.91709 5.19851 5.26795
5.39836 5.53259 5.59745 5.70201 5.78997 5.90061 6.06173 6.18527
6.31358 6.36057 6.40729 6.51957 6.63580 6.82229 6.82518 6.87480
7.21384 7.39999 7.41843 7.53555 7.66161 7.87177 8.53433 8.97925
9.57743 11.07865
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.020747 B = 0.003522 C = 0.003373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1349.270748 B = 7948.546401 C = 8299.101283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.435 5.435
2 C 0.286 3.714
3 C -0.174 4.174
4 C 0.141 3.859
5 N -0.823 5.823
6 S 0.256 5.744
7 C -0.191 4.191
8 C 0.122 3.878
9 N -0.535 5.535
10 C 0.059 3.941
11 C -0.119 4.119
12 C -0.123 4.123
13 C 0.022 3.978
14 H 0.036 0.964
15 C -0.513 4.513
16 H 0.073 0.927
17 C 0.071 3.929
18 N -0.903 5.903
19 Si 0.887 3.113
20 H -0.281 1.281
21 H -0.299 1.299
22 H -0.263 1.263
23 C 0.077 3.923
24 C 0.017 3.983
25 Cl -0.031 7.031
26 H 0.412 0.588
27 H 0.409 0.591
28 H 0.058 0.942
29 H 0.090 0.910
30 H 0.068 0.932
31 H 0.031 0.969
32 H 0.062 0.938
33 H 0.052 0.948
34 H 0.045 0.955
35 H 0.056 0.944
36 H 0.263 0.737
37 H 0.029 0.971
38 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.377 -18.454 1.744 22.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.112 5.112
2 C -0.029 4.029
3 C -0.195 4.195
4 C -0.091 4.091
5 N -0.365 5.365
6 S 0.513 5.487
7 C -0.311 4.311
8 C -0.007 4.007
9 N -0.260 5.260
10 C -0.069 4.069
11 C -0.157 4.157
12 C -0.160 4.160
13 C 0.002 3.998
14 H 0.054 0.946
15 C -0.552 4.552
16 H 0.091 0.909
17 C -0.131 4.131
18 N -0.541 5.541
19 Si 0.718 3.282
20 H -0.208 1.208
21 H -0.227 1.227
22 H -0.188 1.188
23 C -0.049 4.049
24 C -0.023 4.023
25 Cl -0.002 7.002
26 H 0.243 0.757
27 H 0.240 0.760
28 H 0.076 0.924
29 H 0.108 0.892
30 H 0.086 0.914
31 H 0.049 0.951
32 H 0.081 0.919
33 H 0.071 0.929
34 H 0.063 0.937
35 H 0.074 0.926
36 H 0.073 0.927
37 H 0.047 0.953
38 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -13.655 -19.013 2.661 23.560
hybrid contribution -1.710 1.351 -0.288 2.198
sum -15.365 -17.662 2.373 23.530
Atomic orbital electron populations
1.81244 1.11534 1.08686 1.09772 1.24665 0.91429 0.93554 0.93255
1.15236 0.85567 1.05454 1.13254 1.21775 1.00510 0.92472 0.94308
1.41600 1.10807 1.34060 1.49987 1.83464 0.94670 1.27236 1.43336
1.23679 0.96186 1.04096 1.07098 1.20507 0.94688 0.92035 0.93514
1.62071 1.05623 1.08918 1.49402 1.22192 0.93002 0.93452 0.98217
1.21655 0.98352 0.96669 0.99051 1.22028 0.95183 0.98723 1.00076
1.19153 0.93168 0.91660 0.95792 0.94586 1.20998 1.10212 1.16235
1.07741 0.90936 1.24976 0.94604 0.95949 0.97549 1.69899 1.22058
1.23267 1.38892 0.86837 0.77838 0.79210 0.84313 1.20770 1.22725
1.18758 1.22115 0.89460 0.96220 0.97129 1.20018 0.90910 0.93422
0.97930 1.98388 1.85067 1.50204 1.66567 0.75746 0.76047 0.92380
0.89194 0.91414 0.95077 0.91904 0.92904 0.93652 0.92568 0.92719
0.95259 0.91288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.43 -6.03 18.54 41.84 0.78 -5.25 16
2 C 0.29 3.49 14.60 -22.47 -0.33 3.17 16
3 C -0.17 -1.86 5.89 -105.80 -0.62 -2.48 16
4 C 0.14 1.14 7.35 -14.98 -0.11 1.03 16
5 N -0.82 -4.14 9.04 30.98 0.28 -3.86 16
6 S 0.26 2.05 22.99 -107.50 -2.47 -0.42 16
7 C -0.19 -2.11 5.39 -36.22 -0.20 -2.31 16
8 C 0.12 1.52 5.18 -4.98 -0.03 1.49 16
9 N -0.54 -8.44 4.65 -236.11 -1.10 -9.54 16
10 C 0.06 0.94 4.18 -3.83 -0.02 0.92 16
11 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16
12 C -0.12 -2.60 4.73 -26.61 -0.13 -2.73 16
13 C 0.02 0.49 1.85 -91.68 -0.17 0.32 16
14 H 0.04 0.86 7.21 -51.93 -0.37 0.48 16
15 C -0.51 -13.96 9.15 -34.44 -0.31 -14.28 16
16 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16
17 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16
18 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16
19 Si 0.89 21.86 24.35 -169.99 -4.14 17.72 16
20 H -0.28 -6.79 6.89 56.52 0.39 -6.40 16
21 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16
22 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16
23 C 0.08 1.45 4.68 -3.83 -0.02 1.43 16
24 C 0.02 0.20 5.45 -38.92 -0.21 -0.01 16
25 Cl -0.03 -0.39 25.36 -51.86 -1.31 -1.70 16
26 H 0.41 0.97 8.95 -40.82 -0.37 0.61 16
27 H 0.41 1.96 8.28 -40.82 -0.34 1.62 16
28 H 0.06 0.73 7.48 -51.93 -0.39 0.34 16
29 H 0.09 0.99 7.98 -51.93 -0.41 0.58 16
30 H 0.07 1.00 5.06 -51.93 -0.26 0.73 16
31 H 0.03 0.50 7.99 -51.93 -0.42 0.09 16
32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
34 H 0.05 1.03 3.35 -51.92 -0.17 0.86 16
35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.07 1.25 8.01 -51.93 -0.42 0.84 16
LS Contribution 332.58 15.07 5.01 5.01
Total: -1.00 -31.61 332.58 -9.02 -40.62
By element:
Atomic # 1 Polarization: 2.21 SS G_CDS: -4.44 Total: -2.23 kcal
Atomic # 6 Polarization: -11.41 SS G_CDS: -2.40 Total: -13.81 kcal
Atomic # 7 Polarization: -45.94 SS G_CDS: 0.73 Total: -45.20 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal
Atomic # 16 Polarization: 2.05 SS G_CDS: -2.47 Total: -0.42 kcal
Atomic # 17 Polarization: -0.39 SS G_CDS: -1.31 Total: -1.70 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -31.61 -9.02 -40.62 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141114273.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.102 kcal
(2) G-P(sol) polarization free energy of solvation -31.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.496 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds