Wall clock time and date at job start Tue Mar 31 2020 13:56:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13601 * 1
3 3 C 1.43196 * 179.97438 * 2 1
4 4 C 1.37147 * 123.61012 * 320.79018 * 3 2 1
5 5 N 1.38394 * 124.64957 * 0.03847 * 4 3 2
6 6 S 1.70439 * 110.69830 * 180.02562 * 4 3 2
7 7 C 1.75453 * 92.55291 * 0.02562 * 6 4 3
8 8 C 1.50697 * 124.58909 * 179.97438 * 7 6 4
9 9 N 1.46900 * 109.47358 * 270.02923 * 8 7 6
10 10 C 1.46844 * 110.99734 * 293.94784 * 9 8 7
11 11 C 1.53044 * 109.52351 * 174.16205 * 10 9 8
12 12 C 1.53114 * 109.27620 * 59.18200 * 11 10 9
13 13 C 1.53122 * 109.15993 * 302.34480 * 12 11 10
14 14 H 1.09000 * 109.50351 * 297.67604 * 13 12 11
15 15 C 1.50708 * 109.50127 * 177.59814 * 13 12 11
16 16 H 1.07991 * 119.99789 * 240.00607 * 15 13 12
17 17 C 1.37877 * 120.00008 * 59.99918 * 15 13 12
18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 13
19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 13
20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15
21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15
22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15
23 23 C 1.46847 * 110.99870 * 169.74413 * 9 8 7
24 24 C 1.32582 * 110.82665 * 0.26418 * 7 6 4
25 25 Cl 1.73607 * 123.43271 * 179.73503 * 24 7 6
26 26 H 0.97001 * 120.00057 * 179.97438 * 5 4 3
27 27 H 0.97000 * 119.99807 * 359.97438 * 5 4 3
28 28 H 1.09006 * 109.47385 * 150.02620 * 8 7 6
29 29 H 1.09003 * 109.47091 * 30.02568 * 8 7 6
30 30 H 1.09006 * 109.45970 * 54.15049 * 10 9 8
31 31 H 1.08997 * 109.46162 * 294.17118 * 10 9 8
32 32 H 1.09005 * 109.50098 * 299.23981 * 11 10 9
33 33 H 1.08999 * 109.53764 * 179.14860 * 11 10 9
34 34 H 1.09008 * 109.52033 * 182.44299 * 12 11 10
35 35 H 1.08993 * 109.57636 * 62.28390 * 12 11 10
36 36 H 0.96997 * 119.99848 * 180.02562 * 18 17 15
37 37 H 1.09000 * 109.46702 * 65.82562 * 23 9 8
38 38 H 1.09003 * 109.46567 * 305.85129 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3275 -0.8840 0.7220
5 7 2.8154 -1.8808 1.5341
6 16 4.9887 -0.5877 0.4818
7 6 4.6726 0.7501 -0.6084
8 6 5.7388 1.5765 -1.2802
9 7 6.0844 2.7194 -0.4244
10 6 4.9514 3.6453 -0.3001
11 6 5.2960 4.7425 0.7096
12 6 6.5430 5.4932 0.2344
13 6 7.6949 4.4985 0.0666
14 1 7.9280 4.0456 1.0303
15 6 8.9101 5.2197 -0.4574
16 1 9.3459 4.9278 -1.4014
17 6 9.4652 6.2523 0.2683
18 7 10.5253 6.8820 -0.1891
19 14 8.7116 6.7568 1.9014
20 1 7.6833 7.8029 1.6700
21 1 9.7724 7.2936 2.7913
22 1 8.0800 5.5749 2.5414
23 6 7.2808 3.4084 -0.9245
24 6 3.3688 0.9397 -0.7564
25 17 2.6909 2.1838 -1.7596
26 1 3.4163 -2.4709 2.0154
27 1 1.8555 -1.9893 1.6220
28 1 5.3672 1.9394 -2.2385
29 1 6.6252 0.9633 -1.4428
30 1 4.0723 3.0995 0.0425
31 1 4.7434 4.0968 -1.2701
32 1 5.4908 4.2929 1.6833
33 1 4.4610 5.4384 0.7908
34 1 6.8174 6.2473 0.9723
35 1 6.3367 5.9762 -0.7206
36 1 10.9161 7.6081 0.3216
37 1 7.0617 3.8611 -1.8915
38 1 8.0937 2.6907 -1.0354
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001141114273.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:56:49
Heat of formation + Delta-G solvation = 34.412538 kcal
Electronic energy + Delta-G solvation = -22723.741198 eV
Core-core repulsion = 19331.490212 eV
Total energy + Delta-G solvation = -3392.250986 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.071 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.31347 -39.42437 -37.68884 -36.95418 -36.16291 -34.92227 -33.74283 -31.94266
-30.39820 -26.82156 -26.74420 -25.47162 -23.83647 -22.85042 -21.21477 -20.43517
-19.40305 -19.18031 -18.73918 -17.27143 -16.82696 -16.50440 -16.28543 -15.88943
-15.52176 -15.36126 -15.21111 -14.79314 -14.70193 -14.27692 -14.01876 -13.94463
-13.77066 -13.61945 -13.30847 -13.20451 -12.89670 -12.63178 -12.51093 -12.25821
-12.10357 -11.84433 -11.79125 -11.65516 -11.42060 -11.30926 -10.93476 -10.70730
-10.55465 -9.35576 -9.18976 -8.71921 -8.25008 -6.27476 -0.08547 0.06543
0.44666 0.67892 1.34951 1.37853 1.40386 1.51428 1.69152 2.37588
2.40502 2.73248 3.06151 3.11647 3.20276 3.80064 4.08466 4.12242
4.19204 4.29361 4.38996 4.54255 4.61064 4.71452 4.74868 4.84080
4.90358 4.95435 5.02711 5.12200 5.21604 5.30660 5.51715 5.69487
5.80049 5.87429 6.19597 6.26809 6.41110 6.44239 6.56422 6.80631
7.38320 8.91726
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.020747 B = 0.003522 C = 0.003373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1349.270748 B = 7948.546401 C = 8299.101283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.476 5.476
2 C 0.302 3.698
3 C -0.206 4.206
4 C 0.161 3.839
5 N -0.803 5.803
6 S 0.316 5.684
7 C -0.215 4.215
8 C 0.123 3.877
9 N -0.535 5.535
10 C 0.064 3.936
11 C -0.115 4.115
12 C -0.122 4.122
13 C 0.021 3.979
14 H 0.031 0.969
15 C -0.513 4.513
16 H 0.036 0.964
17 C 0.013 3.987
18 N -0.952 5.952
19 Si 0.948 3.052
20 H -0.273 1.273
21 H -0.302 1.302
22 H -0.243 1.243
23 C 0.088 3.912
24 C 0.017 3.983
25 Cl -0.048 7.048
26 H 0.428 0.572
27 H 0.413 0.587
28 H 0.056 0.944
29 H 0.105 0.895
30 H 0.084 0.916
31 H 0.027 0.973
32 H 0.066 0.934
33 H 0.072 0.928
34 H 0.032 0.968
35 H 0.045 0.955
36 H 0.264 0.736
37 H 0.018 0.982
38 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.719 -20.692 3.569 25.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.154 5.154
2 C -0.012 4.012
3 C -0.227 4.227
4 C -0.074 4.074
5 N -0.344 5.344
6 S 0.572 5.428
7 C -0.334 4.334
8 C -0.006 4.006
9 N -0.259 5.259
10 C -0.064 4.064
11 C -0.153 4.153
12 C -0.160 4.160
13 C 0.002 3.998
14 H 0.049 0.951
15 C -0.552 4.552
16 H 0.055 0.945
17 C -0.184 4.184
18 N -0.593 5.593
19 Si 0.776 3.224
20 H -0.200 1.200
21 H -0.230 1.230
22 H -0.167 1.167
23 C -0.039 4.039
24 C -0.023 4.023
25 Cl -0.019 7.019
26 H 0.262 0.738
27 H 0.245 0.755
28 H 0.074 0.926
29 H 0.123 0.877
30 H 0.102 0.898
31 H 0.045 0.955
32 H 0.085 0.915
33 H 0.091 0.909
34 H 0.050 0.950
35 H 0.064 0.936
36 H 0.073 0.927
37 H 0.036 0.964
38 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -15.030 -21.305 4.502 26.459
hybrid contribution -1.216 1.897 -0.885 2.421
sum -16.245 -19.408 3.616 25.567
Atomic orbital electron populations
1.81254 1.12607 1.10147 1.11411 1.24873 0.91654 0.92495 0.92171
1.15177 0.84808 1.07167 1.15523 1.21895 1.00814 0.91702 0.92971
1.41734 1.11626 1.32780 1.48309 1.83316 0.93206 1.24855 1.41375
1.23580 0.95423 1.05689 1.08710 1.20513 0.95928 0.91091 0.93078
1.62006 1.04598 1.09211 1.50100 1.22167 0.93444 0.93210 0.97601
1.21631 0.97031 0.97196 0.99419 1.21929 0.96406 0.98275 0.99350
1.19070 0.91896 0.92729 0.96097 0.95112 1.21354 1.11534 1.16089
1.06223 0.94541 1.25803 0.95035 0.96216 1.01308 1.70046 1.24042
1.24421 1.40765 0.85852 0.77035 0.79577 0.79982 1.19991 1.23024
1.16710 1.21813 0.91183 0.95448 0.95448 1.20117 0.91246 0.93205
0.97764 1.98382 1.85365 1.51020 1.67142 0.73811 0.75506 0.92601
0.87688 0.89766 0.95485 0.91547 0.90948 0.94971 0.93608 0.92731
0.96355 0.90942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.48 -12.82 18.54 19.00 0.35 -12.47 16
2 C 0.30 6.94 14.60 88.33 1.29 8.23 16
3 C -0.21 -3.91 5.89 -20.63 -0.12 -4.03 16
4 C 0.16 2.04 7.35 83.40 0.61 2.65 16
5 N -0.80 -5.00 9.04 -55.91 -0.51 -5.51 16
6 S 0.32 3.86 22.99 -56.49 -1.30 2.56 16
7 C -0.22 -4.16 5.39 24.53 0.13 -4.02 16
8 C 0.12 2.79 5.18 85.56 0.44 3.23 16
9 N -0.53 -15.77 4.65 -900.90 -4.19 -19.96 16
10 C 0.06 1.88 4.18 86.33 0.36 2.24 16
11 C -0.12 -3.76 6.09 30.65 0.19 -3.58 16
12 C -0.12 -5.04 4.73 30.67 0.15 -4.89 16
13 C 0.02 0.95 1.85 -11.48 -0.02 0.93 16
14 H 0.03 1.41 7.21 -2.39 -0.02 1.40 16
15 C -0.51 -28.56 9.15 25.60 0.23 -28.33 16
16 H 0.04 2.23 7.99 -2.92 -0.02 2.20 16
17 C 0.01 0.75 5.45 84.65 0.46 1.21 16
18 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16
19 Si 0.95 45.14 24.35 68.60 1.67 46.81 16
20 H -0.27 -12.60 6.89 99.48 0.69 -11.92 16
21 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16
22 H -0.24 -10.72 6.53 99.48 0.65 -10.07 16
23 C 0.09 3.25 4.68 86.33 0.40 3.65 16
24 C 0.02 0.37 5.45 22.78 0.12 0.49 16
25 Cl -0.05 -1.14 25.36 -2.72 -0.07 -1.21 16
26 H 0.43 0.13 8.95 -92.71 -0.83 -0.70 16
27 H 0.41 2.56 8.28 -92.71 -0.77 1.79 16
28 H 0.06 1.31 7.48 -2.38 -0.02 1.29 16
29 H 0.10 2.05 7.98 -2.39 -0.02 2.03 16
30 H 0.08 2.26 5.06 -2.38 -0.01 2.25 16
31 H 0.03 0.83 7.99 -2.39 -0.02 0.81 16
32 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16
33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16
34 H 0.03 1.40 3.35 -2.38 -0.01 1.40 16
35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
36 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
38 H 0.07 2.58 8.01 -2.39 -0.02 2.56 16
Total: -1.00 -70.14 332.58 -0.02 -70.16
By element:
Atomic # 1 Polarization: 1.41 SS G_CDS: -0.54 Total: 0.87 kcal
Atomic # 6 Polarization: -26.47 SS G_CDS: 4.25 Total: -22.22 kcal
Atomic # 7 Polarization: -92.93 SS G_CDS: -4.04 Total: -96.97 kcal
Atomic # 14 Polarization: 45.14 SS G_CDS: 1.67 Total: 46.81 kcal
Atomic # 16 Polarization: 3.86 SS G_CDS: -1.30 Total: 2.56 kcal
Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.21 kcal
Total: -70.14 -0.02 -70.16 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141114273.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.574 kcal
(2) G-P(sol) polarization free energy of solvation -70.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.161 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.413 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds