Wall clock time and date at job start Tue Mar 31 2020 13:57:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30903 * 1
3 3 Si 1.86808 * 119.99933 * 2 1
4 4 H 1.48505 * 109.47006 * 179.97438 * 3 2 1
5 5 H 1.48487 * 109.47288 * 300.00123 * 3 2 1
6 6 H 1.48500 * 109.46942 * 60.00281 * 3 2 1
7 7 C 1.39867 * 120.00160 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99994 * 164.10756 * 7 2 1
9 9 C 1.41193 * 119.99747 * 344.10735 * 7 2 1
10 10 C 1.40797 * 120.55832 * 154.25120 * 9 7 2
11 11 N 1.31473 * 120.38413 * 180.02562 * 10 9 7
12 12 C 1.32749 * 121.73787 * 0.02562 * 11 10 9
13 13 N 1.38408 * 119.43215 * 179.97438 * 12 11 10
14 14 C 1.46850 * 111.00084 * 64.82861 * 13 12 11
15 15 C 1.53042 * 109.52591 * 174.15841 * 14 13 12
16 16 C 1.53123 * 109.27618 * 59.17632 * 15 14 13
17 17 C 1.50692 * 109.52166 * 182.44183 * 16 15 14
18 18 N 1.34778 * 120.00348 * 299.68307 * 17 16 15
19 19 S 1.59897 * 120.00075 * 119.68543 * 17 16 15
20 20 C 1.53114 * 109.16478 * 302.34949 * 16 15 14
21 21 C 1.46845 * 111.00319 * 300.61877 * 13 12 11
22 22 C 1.39786 * 121.12925 * 359.97438 * 12 11 10
23 23 Cl 1.73602 * 120.26427 * 179.74869 * 22 12 11
24 24 C 1.36667 * 119.47442 * 0.02562 * 22 12 11
25 25 H 0.96998 * 119.99798 * 359.97438 * 1 2 3
26 26 H 1.07989 * 119.81072 * 0.04817 * 10 9 7
27 27 H 1.08997 * 109.46056 * 294.17675 * 14 13 12
28 28 H 1.08995 * 109.46281 * 54.14233 * 14 13 12
29 29 H 1.08992 * 109.50087 * 299.24148 * 15 14 13
30 30 H 1.08990 * 109.50362 * 179.11597 * 15 14 13
31 31 H 1.09002 * 109.52032 * 62.25282 * 16 15 14
32 32 H 0.97003 * 119.99828 * 0.02562 * 18 17 16
33 33 H 0.97001 * 120.00487 * 179.97438 * 18 17 16
34 34 H 1.09005 * 109.50217 * 297.71692 * 20 16 15
35 35 H 1.08994 * 109.50752 * 177.59301 * 20 16 15
36 36 H 1.09006 * 109.45877 * 305.85484 * 21 13 12
37 37 H 1.08997 * 109.46181 * 65.82423 * 21 13 12
38 38 H 1.07995 * 120.79827 * 179.97438 * 24 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3090 0.0000 0.0000
3 14 2.2431 1.6178 0.0000
4 1 3.7031 1.3464 0.0006
5 1 1.8843 2.3965 -1.2124
6 1 1.8843 2.3964 1.2125
7 6 2.0084 -1.2113 -0.0005
8 1 3.0574 -1.2290 -0.2567
9 6 1.3429 -2.4108 0.3338
10 6 1.8082 -3.6473 -0.1531
11 7 1.1856 -4.7621 0.1599
12 6 0.1086 -4.7662 0.9360
13 7 -0.5099 -5.9678 1.2348
14 6 0.3732 -6.8309 2.0295
15 6 -0.3911 -8.0838 2.4634
16 6 -0.8833 -8.8313 1.2210
17 6 -1.6879 -10.0336 1.6426
18 7 -1.1166 -10.9984 2.3905
19 16 -3.2195 -10.1650 1.2025
20 6 -1.7613 -7.8951 0.3861
21 6 -0.9572 -6.6477 0.0125
22 6 -0.4116 -3.5777 1.4565
23 17 -1.8252 -3.6085 2.4638
24 6 0.1982 -2.3907 1.1615
25 1 -0.4850 0.8400 0.0004
26 1 2.6818 -3.6802 -0.7871
27 1 1.2347 -7.1211 1.4281
28 1 0.7127 -6.2888 2.9120
29 1 -1.2449 -7.7950 3.0764
30 1 0.2692 -8.7314 3.0400
31 1 -0.0279 -9.1540 0.6275
32 1 -0.1876 -10.9186 2.6578
33 1 -1.6346 -11.7722 2.6622
34 1 -2.6367 -7.6034 0.9665
35 1 -2.0800 -8.4079 -0.5213
36 1 -1.5841 -5.9725 -0.5699
37 1 -0.0895 -6.9388 -0.5794
38 1 -0.1858 -1.4598 1.5518
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001156805898.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:57:43
Heat of formation + Delta-G solvation = 13.333771 kcal
Electronic energy + Delta-G solvation = -22774.161088 eV
Core-core repulsion = 19380.996058 eV
Total energy + Delta-G solvation = -3393.165030 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.071 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.18237 -39.76734 -37.78337 -37.10938 -35.95856 -34.12840 -32.38590 -31.87983
-31.12364 -28.10571 -26.34681 -24.46605 -24.03954 -23.47746 -22.59207 -20.93268
-19.41867 -19.11670 -18.26657 -17.87455 -17.37710 -16.86368 -16.04623 -15.93963
-15.84566 -15.46290 -14.98295 -14.71046 -14.43062 -14.16278 -13.83838 -13.66963
-13.41270 -13.28781 -13.03466 -12.96006 -12.61041 -12.55749 -12.42813 -12.14299
-11.95730 -11.81956 -11.68006 -11.53104 -11.41218 -11.20125 -10.32983 -10.04839
-9.50835 -9.39528 -9.28452 -8.75987 -8.73875 -6.50555 -0.13881 0.55004
0.87034 1.20604 1.40879 1.47416 1.56401 1.56849 2.16478 2.43324
2.59472 2.96752 3.23906 3.49859 3.72694 3.82871 4.09416 4.20907
4.32459 4.45793 4.51797 4.64357 4.68343 4.69480 4.79654 4.90631
4.95032 5.01143 5.09969 5.13720 5.18778 5.29458 5.49423 5.63672
5.72721 5.83291 6.17805 6.22196 6.25210 6.51887 6.66966 6.79636
7.49197 8.17358
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.029283 B = 0.003001 C = 0.002888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 955.968845 B = 9328.280679 C = 9693.518955
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.811 5.811
2 C 0.034 3.966
3 Si 0.988 3.012
4 H -0.251 1.251
5 H -0.266 1.266
6 H -0.266 1.266
7 C -0.463 4.463
8 H 0.096 0.904
9 C 0.051 3.949
10 C -0.022 4.022
11 N -0.474 5.474
12 C 0.143 3.857
13 N -0.465 5.465
14 C 0.069 3.931
15 C -0.090 4.090
16 C -0.075 4.075
17 C 0.331 3.669
18 N -0.749 5.749
19 S -0.549 6.549
20 C -0.082 4.082
21 C 0.071 3.929
22 C -0.021 4.021
23 Cl -0.078 7.078
24 C -0.150 4.150
25 H 0.295 0.705
26 H 0.145 0.855
27 H 0.039 0.961
28 H 0.063 0.937
29 H 0.068 0.932
30 H 0.103 0.897
31 H 0.117 0.883
32 H 0.417 0.583
33 H 0.426 0.574
34 H 0.072 0.928
35 H 0.080 0.920
36 H 0.050 0.950
37 H 0.034 0.966
38 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.600 -13.531 5.397 14.798
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.435 5.435
2 C -0.183 4.183
3 Si 0.809 3.191
4 H -0.175 1.175
5 H -0.191 1.191
6 H -0.191 1.191
7 C -0.492 4.492
8 H 0.114 0.886
9 C 0.046 3.954
10 C -0.186 4.186
11 N -0.185 5.185
12 C -0.086 4.086
13 N -0.188 5.188
14 C -0.058 4.058
15 C -0.130 4.130
16 C -0.098 4.098
17 C 0.075 3.925
18 N -0.284 5.284
19 S -0.419 6.419
20 C -0.121 4.121
21 C -0.057 4.057
22 C -0.052 4.052
23 Cl -0.049 7.049
24 C -0.177 4.177
25 H 0.106 0.894
26 H 0.162 0.838
27 H 0.057 0.943
28 H 0.082 0.918
29 H 0.087 0.913
30 H 0.122 0.878
31 H 0.135 0.865
32 H 0.251 0.749
33 H 0.261 0.739
34 H 0.091 0.909
35 H 0.099 0.901
36 H 0.068 0.932
37 H 0.053 0.947
38 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 1.217 -14.246 5.209 15.218
hybrid contribution 1.468 1.492 0.211 2.104
sum 2.685 -12.754 5.420 14.116
Atomic orbital electron populations
1.69860 1.09229 1.31434 1.33007 1.26900 0.95498 1.04993 0.90931
0.85040 0.79621 0.75552 0.78927 1.17459 1.19116 1.19053 1.19888
0.98277 0.91189 1.39828 0.88637 1.18757 0.91860 0.94868 0.89887
1.22615 1.03221 0.87592 1.05172 1.67228 1.07392 1.31992 1.11880
1.18768 0.95305 0.90251 1.04284 1.59595 1.37537 1.01922 1.19696
1.21979 0.93682 0.93202 0.96938 1.21588 1.00725 0.95235 0.95459
1.21060 0.98598 0.91335 0.98814 1.24065 0.98411 0.88802 0.81216
1.43544 1.17080 1.20993 1.46822 1.91338 1.01612 1.85864 1.63099
1.21555 0.97334 0.92824 1.00384 1.21991 0.97854 0.95252 0.90555
1.21324 0.91057 0.94720 0.98052 1.98256 1.39842 1.98941 1.67904
1.21288 0.99460 0.95951 1.01009 0.89433 0.83759 0.94306 0.91849
0.91318 0.87843 0.86484 0.74936 0.73890 0.90944 0.90136 0.93160
0.94721 0.85943
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -39.33 10.95 21.82 0.24 -39.09 16
2 C 0.03 1.57 5.19 85.23 0.44 2.01 16
3 Si 0.99 34.50 29.59 68.60 2.03 36.53 16
4 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16
5 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16
6 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16
7 C -0.46 -22.36 9.06 23.39 0.21 -22.14 16
8 H 0.10 4.31 7.89 -2.91 -0.02 4.28 16
9 C 0.05 2.56 5.57 -21.18 -0.12 2.44 16
10 C -0.02 -1.04 10.97 85.37 0.94 -0.10 16
11 N -0.47 -21.31 9.66 -191.09 -1.85 -23.16 16
12 C 0.14 6.21 5.29 133.32 0.70 6.91 16
13 N -0.46 -16.61 3.99 -701.60 -2.80 -19.41 16
14 C 0.07 1.99 5.28 86.33 0.46 2.45 16
15 C -0.09 -1.78 5.26 30.65 0.16 -1.62 16
16 C -0.08 -1.48 2.59 -11.46 -0.03 -1.51 16
17 C 0.33 6.06 6.30 87.65 0.55 6.61 16
18 N -0.75 -6.58 8.76 -53.95 -0.47 -7.05 16
19 S -0.55 -15.00 27.70 -56.49 -1.56 -16.57 16
20 C -0.08 -2.21 4.28 30.65 0.13 -2.08 16
21 C 0.07 2.36 5.22 86.33 0.45 2.81 16
22 C -0.02 -0.98 6.32 22.28 0.14 -0.84 16
23 Cl -0.08 -3.19 28.43 -2.72 -0.08 -3.26 16
24 C -0.15 -7.54 8.51 22.65 0.19 -7.35 16
25 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16
26 H 0.15 6.15 8.06 -2.92 -0.02 6.12 16
27 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16
28 H 0.06 1.94 8.10 -2.39 -0.02 1.93 16
29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
30 H 0.10 1.22 7.66 -2.39 -0.02 1.20 16
31 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16
32 H 0.42 1.11 8.32 -92.71 -0.77 0.34 16
33 H 0.43 2.89 8.73 -92.71 -0.81 2.08 16
34 H 0.07 2.23 7.54 -2.38 -0.02 2.22 16
35 H 0.08 2.14 7.78 -2.39 -0.02 2.12 16
36 H 0.05 1.88 8.10 -2.38 -0.02 1.86 16
37 H 0.03 1.17 7.97 -2.39 -0.02 1.15 16
38 H 0.12 6.41 6.28 -2.91 -0.02 6.40 16
Total: -1.00 -61.68 339.33 -0.72 -62.40
By element:
Atomic # 1 Polarization: 22.48 SS G_CDS: -0.46 Total: 22.02 kcal
Atomic # 6 Polarization: -16.64 SS G_CDS: 4.23 Total: -12.41 kcal
Atomic # 7 Polarization: -83.83 SS G_CDS: -4.88 Total: -88.71 kcal
Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal
Atomic # 16 Polarization: -15.00 SS G_CDS: -1.56 Total: -16.57 kcal
Atomic # 17 Polarization: -3.19 SS G_CDS: -0.08 Total: -3.26 kcal
Total: -61.68 -0.72 -62.40 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001156805898.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.736 kcal
(2) G-P(sol) polarization free energy of solvation -61.680 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.402 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.334 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds