Wall clock time and date at job start Tue Mar 31 2020 14:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.46983 * 2 1 4 4 C 1.31907 * 124.30044 * 90.00266 * 3 2 1 5 5 C 1.45054 * 114.81712 * 179.97438 * 4 3 2 6 6 C 1.39805 * 111.98861 * 359.97438 * 5 4 3 7 7 N 1.33863 * 119.10407 * 179.97438 * 6 5 4 8 8 C 1.31300 * 121.03465 * 0.02562 * 7 6 5 9 9 N 1.32058 * 122.18496 * 0.02562 * 8 7 6 10 10 C 1.32472 * 121.19887 * 359.97438 * 9 8 7 11 11 N 1.38525 * 120.52618 * 180.02562 * 10 9 8 12 12 C 1.38434 * 120.00467 * 356.69121 * 11 10 9 13 13 C 1.38949 * 119.99808 * 301.08927 * 12 11 10 14 14 H 1.08004 * 119.99711 * 158.34608 * 13 12 11 15 15 C 1.40864 * 120.00110 * 338.34539 * 13 12 11 16 16 N 1.30317 * 119.99858 * 350.84062 * 15 13 12 17 17 Si 1.86800 * 119.99933 * 170.84519 * 15 13 12 18 18 H 1.48499 * 109.47381 * 59.99659 * 17 15 13 19 19 H 1.48505 * 109.47246 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47080 * 299.99749 * 17 15 13 21 21 C 1.41129 * 120.00245 * 121.09273 * 12 11 10 22 22 C 1.43203 * 120.00124 * 185.73345 * 21 12 11 23 23 N 9.12403 * 120.64798 * 235.11640 * 3 1 2 24 24 C 1.43204 * 120.00046 * 5.73261 * 21 12 11 25 25 N 7.18792 * 79.40116 * 47.29638 * 2 1 3 26 26 S 1.75355 * 124.30367 * 269.99962 * 3 2 1 27 27 H 1.09000 * 109.47283 * 300.00026 * 1 2 3 28 28 H 1.08997 * 109.47254 * 59.99882 * 1 2 3 29 29 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47283 * 239.99973 * 2 1 3 31 31 H 1.08997 * 109.47254 * 120.00118 * 2 1 3 32 32 H 1.08003 * 122.59021 * 0.02562 * 4 3 2 33 33 H 1.08005 * 118.90346 * 180.27916 * 8 7 6 34 34 H 0.97003 * 119.99968 * 176.68703 * 11 10 9 35 35 H 0.97008 * 119.99794 * 185.27234 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2801 2.1216 1.0897 5 6 2.7575 3.4703 0.8507 6 6 2.8593 3.7554 -0.5142 7 7 3.2870 4.9649 -0.8966 8 6 3.6100 5.8796 -0.0118 9 7 3.5323 5.6595 1.2880 10 6 3.1200 4.4936 1.7631 11 7 3.0434 4.2780 3.1293 12 6 3.4636 5.2601 4.0098 13 6 4.7736 5.7210 3.9627 14 1 5.0206 6.6889 4.3735 15 6 5.7794 4.9260 3.3793 16 7 5.5236 3.6924 3.0461 17 14 7.4801 5.6399 3.0833 18 1 8.0683 6.0704 4.3771 19 1 8.3495 4.6075 2.4639 20 1 7.3746 6.8093 2.1741 21 6 2.5616 5.7931 4.9553 22 6 2.9582 6.8926 5.7827 23 7 3.2719 7.7650 6.4391 24 6 1.2496 5.2346 5.0873 25 7 0.2079 4.7917 5.1921 26 16 2.3616 2.3525 -1.4485 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.1392 1.7218 2.0830 33 1 3.9467 6.8454 -0.3586 34 1 2.6951 3.4388 3.4691 35 1 6.2350 3.1217 2.7156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158213059.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:17 Heat of formation + Delta-G solvation = 114.674413 kcal Electronic energy + Delta-G solvation = -23926.318245 eV Core-core repulsion = 20436.440181 eV Total energy + Delta-G solvation = -3489.878064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.069 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.60108 -37.66292 -36.65546 -35.39837 -34.76110 -33.95409 -33.24919 -32.19321 -30.23168 -28.26847 -27.20651 -24.81854 -24.15394 -22.37876 -21.57946 -20.49780 -19.31612 -18.21822 -17.50854 -16.59005 -16.48448 -16.15055 -15.68194 -14.87850 -14.75205 -14.30930 -13.91898 -13.86816 -13.78254 -13.12303 -12.84052 -12.66386 -12.62451 -12.36369 -11.92269 -11.75336 -11.74259 -11.62616 -11.58066 -11.48984 -11.33800 -11.25978 -11.03996 -10.96494 -10.68113 -10.55812 -10.44594 -10.13465 -9.21101 -8.70757 -8.46108 -8.07767 -7.81600 -7.16464 -5.46131 0.85534 1.38365 1.53222 2.03678 2.19369 2.45245 2.67338 2.71170 2.86198 3.35989 3.52870 3.80868 4.01080 4.17559 4.25270 4.33793 4.51935 4.63890 4.92817 4.98836 5.10313 5.14647 5.19349 5.23362 5.54425 5.55928 5.69058 5.74802 5.82775 6.07481 6.09609 6.14239 6.27582 6.41122 6.51513 6.98625 7.10925 7.24263 7.57506 7.68108 7.99449 8.18865 8.74118 8.90363 9.09514 9.12661 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.005187 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.884729 B = 5397.287045 C = 6633.986453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.189 4.189 4 C -0.074 4.074 5 C -0.229 4.229 6 C 0.122 3.878 7 N -0.552 5.552 8 C 0.353 3.647 9 N -0.561 5.561 10 C 0.528 3.472 11 N -0.613 5.613 12 C 0.376 3.624 13 C -0.340 4.340 14 H 0.113 0.887 15 C 0.076 3.924 16 N -0.731 5.731 17 Si 0.926 3.074 18 H -0.252 1.252 19 H -0.271 1.271 20 H -0.248 1.248 21 C -0.312 4.312 22 C 0.327 3.673 23 N -0.532 5.532 24 C 0.307 3.693 25 N -0.535 5.535 26 S 0.130 5.870 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.196 0.804 34 H 0.411 0.589 35 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 -9.159 -10.749 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.305 4.305 4 C -0.104 4.104 5 C -0.247 4.247 6 C -0.128 4.128 7 N -0.275 5.275 8 C 0.059 3.941 9 N -0.286 5.286 10 C 0.277 3.723 11 N -0.234 5.234 12 C 0.273 3.727 13 C -0.368 4.368 14 H 0.131 0.869 15 C -0.155 4.155 16 N -0.350 5.350 17 Si 0.748 3.252 18 H -0.176 1.176 19 H -0.195 1.195 20 H -0.171 1.171 21 C -0.330 4.330 22 C 0.019 3.981 23 N -0.215 5.215 24 C 0.000 4.000 25 N -0.218 5.218 26 S 0.387 5.613 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.212 0.788 34 H 0.249 0.751 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.972 -8.098 -11.471 14.075 hybrid contribution 0.858 -0.746 1.446 1.840 sum 1.830 -8.844 -10.025 13.493 Atomic orbital electron populations 1.21805 0.94422 1.01791 1.02693 1.20067 0.96084 0.89431 1.03169 1.23741 1.10046 1.01023 0.95727 1.20423 0.99342 0.91433 0.99242 1.19910 1.14280 0.96479 0.94075 1.23425 0.98666 0.97452 0.93265 1.67967 1.20067 1.00378 1.39121 1.24585 0.89092 0.97073 0.83305 1.67978 1.23202 1.20719 1.16682 1.17971 0.83402 0.86735 0.84234 1.41338 1.62691 1.18458 1.00962 1.16663 0.89910 0.82073 0.84069 1.20182 0.90465 1.03399 1.22717 0.86913 1.26535 1.03847 0.94401 0.90689 1.69431 1.37199 1.06073 1.22303 0.85958 0.77713 0.80544 0.81014 1.17564 1.19504 1.17117 1.12773 0.91392 1.11851 1.17019 1.24600 0.91877 0.90895 0.90732 1.81060 1.10112 1.15304 1.14987 1.25255 0.91535 0.91769 0.91436 1.81110 1.12488 1.14432 1.13723 1.83867 1.68904 1.01657 1.06855 0.92138 0.92428 0.92190 0.90859 0.89948 0.84136 0.78791 0.75111 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.97 16 2 C -0.05 -0.46 6.37 -27.89 -0.18 -0.64 16 3 C -0.19 -2.41 5.64 -36.22 -0.20 -2.62 16 4 C -0.07 -1.08 9.85 -38.79 -0.38 -1.46 16 5 C -0.23 -3.96 6.08 -105.24 -0.64 -4.60 16 6 C 0.12 2.08 7.69 -16.08 -0.12 1.96 16 7 N -0.55 -9.62 10.47 -13.32 -0.14 -9.76 16 8 C 0.35 5.94 12.26 -92.35 -1.13 4.81 16 9 N -0.56 -10.66 8.82 -13.40 -0.12 -10.78 16 10 C 0.53 9.92 5.94 -154.39 -0.92 9.00 16 11 N -0.61 -11.54 3.36 -9.19 -0.03 -11.58 16 12 C 0.38 7.69 5.51 -83.52 -0.46 7.23 16 13 C -0.34 -6.89 7.75 -38.33 -0.30 -7.18 16 14 H 0.11 2.34 7.02 -52.48 -0.37 1.97 16 15 C 0.08 1.42 4.88 -17.20 -0.08 1.33 16 16 N -0.73 -13.53 10.99 55.60 0.61 -12.92 16 17 Si 0.93 14.93 29.58 -169.99 -5.03 9.90 16 18 H -0.25 -4.09 7.11 56.52 0.40 -3.69 16 19 H -0.27 -4.27 7.11 56.52 0.40 -3.87 16 20 H -0.25 -4.07 7.11 56.52 0.40 -3.67 16 21 C -0.31 -6.75 5.88 -104.95 -0.62 -7.36 16 22 C 0.33 7.43 13.91 -22.47 -0.31 7.12 16 23 N -0.53 -12.57 18.54 41.83 0.78 -11.80 16 24 C 0.31 6.81 14.79 -22.45 -0.33 6.48 16 25 N -0.53 -12.30 18.54 41.87 0.78 -11.52 16 26 S 0.13 1.76 23.20 -107.50 -2.49 -0.73 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.14 1.85 7.70 -52.48 -0.40 1.44 16 33 H 0.20 2.54 8.06 -52.48 -0.42 2.12 16 34 H 0.41 7.23 8.13 -40.82 -0.33 6.89 16 35 H 0.30 5.22 8.29 -40.82 -0.34 4.88 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -25.51 341.17 -8.59 -34.11 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -2.77 Total: 6.84 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: -5.31 Total: 13.10 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: 1.87 Total: -68.35 kcal Atomic # 14 Polarization: 14.93 SS G_CDS: -5.03 Total: 9.90 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.49 Total: -0.73 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -25.51 -8.59 -34.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213059.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.780 kcal (2) G-P(sol) polarization free energy of solvation -25.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds