Wall clock time and date at job start Tue Mar 31 2020 14:11:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50698 * 109.46884 * 2 1
4 4 N 1.31307 * 118.90777 * 94.93806 * 3 2 1
5 5 C 1.33861 * 121.03399 * 180.02562 * 4 3 2
6 6 S 1.75752 * 131.28715 * 180.02562 * 5 4 3
7 7 C 1.75360 * 92.18368 * 179.97438 * 6 5 4
8 8 C 1.31896 * 111.40038 * 0.02562 * 7 6 5
9 9 C 1.39809 * 119.10023 * 359.97438 * 5 4 3
10 10 C 1.41806 * 117.54684 * 0.03972 * 9 5 4
11 11 N 1.38526 * 120.53164 * 179.97438 * 10 9 5
12 12 C 1.38439 * 119.99817 * 176.75709 * 11 10 9
13 13 C 1.38947 * 120.00238 * 300.73006 * 12 11 10
14 14 H 1.07997 * 120.00039 * 152.44426 * 13 12 11
15 15 C 1.40863 * 119.99666 * 332.44019 * 13 12 11
16 16 N 1.30316 * 120.00277 * 1.95412 * 15 13 12
17 17 Si 1.86808 * 119.99838 * 181.95239 * 15 13 12
18 18 H 1.48495 * 109.46891 * 0.02562 * 17 15 13
19 19 H 1.48493 * 109.47068 * 120.00028 * 17 15 13
20 20 H 1.48504 * 109.46705 * 240.00229 * 17 15 13
21 21 C 1.41138 * 119.99973 * 120.72743 * 12 11 10
22 22 C 1.43195 * 120.00062 * 174.62685 * 21 12 11
23 23 N 7.25143 * 86.19921 * 291.32661 * 2 1 3
24 24 C 1.43203 * 120.00196 * 354.63253 * 21 12 11
25 25 N 7.03999 * 77.04991 * 326.81142 * 2 1 3
26 26 N 1.32066 * 118.90674 * 275.28374 * 3 2 1
27 27 H 1.08995 * 109.47211 * 60.00017 * 1 2 3
28 28 H 1.09004 * 109.46435 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.46990 * 299.99650 * 1 2 3
30 30 H 1.09004 * 109.47405 * 240.00289 * 2 1 3
31 31 H 1.08998 * 109.47689 * 120.00162 * 2 1 3
32 32 H 1.08004 * 124.29401 * 179.97438 * 7 6 5
33 33 H 1.08005 * 122.58920 * 180.02562 * 8 7 6
34 34 H 0.96999 * 120.00440 * 356.75573 * 11 10 9
35 35 H 0.97003 * 120.00171 * 185.01065 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.3371 1.9863 1.1452
5 6 2.7865 3.2462 1.1947
6 16 3.2674 4.2534 2.5524
7 6 3.6483 5.6046 1.5015
8 6 3.4262 5.3075 0.2358
9 6 2.9311 3.9639 0.0036
10 6 2.5873 3.3057 -1.2045
11 7 2.7062 3.9589 -2.4203
12 6 2.4319 3.2848 -3.5979
13 6 3.1524 2.1439 -3.9295
14 1 2.7035 1.3834 -4.5511
15 6 4.4684 1.9793 -3.4548
16 7 4.9966 2.8788 -2.6736
17 14 5.4564 0.4716 -3.9450
18 1 4.6356 -0.3910 -4.8323
19 1 6.6833 0.8967 -4.6656
20 1 5.8358 -0.2889 -2.7273
21 6 1.4203 3.7564 -4.4618
22 6 1.2136 3.1287 -5.7321
23 7 1.0493 2.6314 -6.7400
24 6 0.6006 4.8626 -4.0679
25 7 -0.0477 5.7417 -3.7556
26 7 2.1447 2.0582 -1.1512
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3632 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.8934 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 4.0170 6.5592 1.8471
33 1 3.6009 6.0098 -0.5659
34 1 2.9817 4.8885 -2.4465
35 1 5.9258 2.8030 -2.4055
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001158214257.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:11:50
Heat of formation + Delta-G solvation = 118.296678 kcal
Electronic energy + Delta-G solvation = -24294.209956 eV
Core-core repulsion = 20804.488966 eV
Total energy + Delta-G solvation = -3489.720990 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 325.069 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.65575 -37.69486 -36.13550 -35.41447 -34.78230 -33.96882 -32.90258 -32.25409
-30.32767 -28.35548 -27.18599 -24.87015 -24.01637 -22.17787 -21.41062 -20.55673
-19.23524 -18.47918 -17.52007 -16.55213 -16.50298 -15.97212 -15.35068 -14.89274
-14.77668 -14.01900 -13.85222 -13.77637 -13.57448 -12.91945 -12.83206 -12.64922
-12.43200 -12.35653 -11.94267 -11.89773 -11.75466 -11.61478 -11.51640 -11.40958
-11.12253 -10.99381 -10.96880 -10.84768 -10.83391 -10.52216 -10.38903 -10.11501
-9.19646 -8.66192 -8.43891 -8.05288 -7.78538 -7.14946 -5.47647 0.88924
1.43482 1.57155 2.09057 2.19446 2.49356 2.68032 2.76200 2.83401
3.37378 3.52863 3.80542 4.00029 4.17048 4.23309 4.29847 4.41384
4.78032 4.94541 5.11073 5.15228 5.32483 5.47877 5.53772 5.57154
5.61025 5.85566 6.05115 6.08054 6.17470 6.21896 6.29034 6.35865
6.40206 6.60195 7.00976 7.15419 7.28949 7.61515 7.71187 8.02662
8.20803 8.79221 8.88684 9.08150 9.16311
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.009903 B = 0.005682 C = 0.005122
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2826.734473 B = 4926.684557 C = 5465.038934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.051 4.051
3 C 0.379 3.621
4 N -0.549 5.549
5 C 0.127 3.873
6 S 0.123 5.877
7 C -0.228 4.228
8 C -0.069 4.069
9 C -0.240 4.240
10 C 0.534 3.466
11 N -0.613 5.613
12 C 0.379 3.621
13 C -0.346 4.346
14 H 0.113 0.887
15 C 0.073 3.927
16 N -0.736 5.736
17 Si 0.928 3.072
18 H -0.246 1.246
19 H -0.263 1.263
20 H -0.263 1.263
21 C -0.304 4.304
22 C 0.326 3.674
23 N -0.529 5.529
24 C 0.307 3.693
25 N -0.532 5.532
26 N -0.553 5.553
27 H 0.064 0.936
28 H 0.062 0.938
29 H 0.053 0.947
30 H 0.092 0.908
31 H 0.084 0.916
32 H 0.168 0.832
33 H 0.142 0.858
34 H 0.409 0.591
35 H 0.300 0.700
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.223 -2.030 10.712 12.089
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.090 4.090
3 C 0.106 3.894
4 N -0.272 5.272
5 C -0.124 4.124
6 S 0.379 5.621
7 C -0.362 4.362
8 C -0.100 4.100
9 C -0.258 4.258
10 C 0.282 3.718
11 N -0.235 5.235
12 C 0.276 3.724
13 C -0.374 4.374
14 H 0.131 0.869
15 C -0.157 4.157
16 N -0.356 5.356
17 Si 0.749 3.251
18 H -0.169 1.169
19 H -0.188 1.188
20 H -0.188 1.188
21 C -0.323 4.323
22 C 0.018 3.982
23 N -0.212 5.212
24 C -0.001 4.001
25 N -0.214 5.214
26 N -0.278 5.278
27 H 0.083 0.917
28 H 0.081 0.919
29 H 0.072 0.928
30 H 0.110 0.890
31 H 0.103 0.897
32 H 0.186 0.814
33 H 0.160 0.840
34 H 0.248 0.752
35 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 3.886 -2.502 11.266 12.177
hybrid contribution 1.407 0.932 -1.345 2.158
sum 5.293 -1.570 9.921 11.354
Atomic orbital electron populations
1.21664 0.93730 1.02003 1.02585 1.20293 0.96626 0.88268 1.03808
1.22777 0.88410 0.96167 0.82014 1.67784 1.20599 1.08843 1.29941
1.23450 0.98250 0.94772 0.95895 1.83903 1.68372 1.03408 1.06392
1.24875 1.11632 1.03115 0.96556 1.20531 0.98437 0.94157 0.96876
1.19975 1.14412 0.97139 0.94260 1.17918 0.83033 0.87020 0.83794
1.41468 1.66899 1.13378 1.01755 1.16728 0.86378 0.88039 0.81299
1.20214 0.95432 1.02472 1.19246 0.86915 1.26561 0.99125 0.98452
0.91520 1.69460 1.15569 1.31427 1.19104 0.85846 0.79345 0.79724
0.80136 1.16853 1.18755 1.18790 1.12886 1.14108 1.09285 0.95979
1.24592 0.91278 0.91304 0.91000 1.81054 1.13012 1.13713 1.13379
1.25253 0.91342 0.91378 0.92079 1.81081 1.13928 1.15576 1.10843
1.67778 1.23059 1.07736 1.29261 0.91733 0.91867 0.92764 0.88989
0.89703 0.81446 0.84009 0.75230 0.88784
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.81 9.89 37.16 0.37 -1.44 16
2 C -0.05 -0.71 6.36 -27.88 -0.18 -0.89 16
3 C 0.38 6.79 6.89 -157.38 -1.08 5.71 16
4 N -0.55 -9.97 10.36 -9.46 -0.10 -10.07 16
5 C 0.13 2.22 7.70 -16.08 -0.12 2.10 16
6 S 0.12 1.69 23.23 -107.50 -2.50 -0.81 16
7 C -0.23 -2.85 11.02 28.83 0.32 -2.53 16
8 C -0.07 -1.01 10.03 -38.78 -0.39 -1.40 16
9 C -0.24 -4.24 6.08 -105.24 -0.64 -4.88 16
10 C 0.53 10.24 6.07 -154.39 -0.94 9.31 16
11 N -0.61 -11.60 3.30 -9.19 -0.03 -11.63 16
12 C 0.38 7.73 5.48 -83.52 -0.46 7.27 16
13 C -0.35 -7.00 7.52 -38.33 -0.29 -7.29 16
14 H 0.11 2.33 7.28 -52.49 -0.38 1.95 16
15 C 0.07 1.37 5.30 -17.20 -0.09 1.28 16
16 N -0.74 -13.73 10.92 55.60 0.61 -13.12 16
17 Si 0.93 14.99 29.57 -169.99 -5.03 9.96 16
18 H -0.25 -4.06 7.11 56.52 0.40 -3.65 16
19 H -0.26 -4.19 7.11 56.52 0.40 -3.79 16
20 H -0.26 -4.29 7.11 56.52 0.40 -3.89 16
21 C -0.30 -6.53 5.88 -104.95 -0.62 -7.15 16
22 C 0.33 7.35 14.05 -22.48 -0.32 7.03 16
23 N -0.53 -12.39 18.54 41.83 0.78 -11.61 16
24 C 0.31 6.80 14.82 -22.47 -0.33 6.46 16
25 N -0.53 -12.26 18.54 41.84 0.78 -11.49 16
26 N -0.55 -10.82 8.93 -9.56 -0.09 -10.91 16
27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
32 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16
33 H 0.14 1.80 7.70 -52.48 -0.40 1.40 16
34 H 0.41 7.15 8.18 -40.82 -0.33 6.82 16
35 H 0.30 5.17 8.29 -40.82 -0.34 4.84 16
LS Contribution 342.01 15.07 5.15 5.15
Total: -1.00 -25.68 342.01 -7.99 -33.66
By element:
Atomic # 1 Polarization: 10.05 SS G_CDS: -2.79 Total: 7.26 kcal
Atomic # 6 Polarization: 18.37 SS G_CDS: -4.77 Total: 13.60 kcal
Atomic # 7 Polarization: -70.78 SS G_CDS: 1.94 Total: -68.83 kcal
Atomic # 14 Polarization: 14.99 SS G_CDS: -5.03 Total: 9.96 kcal
Atomic # 16 Polarization: 1.69 SS G_CDS: -2.50 Total: -0.81 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -25.68 -7.99 -33.66 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001158214257.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 151.959 kcal
(2) G-P(sol) polarization free energy of solvation -25.676 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) 118.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds