Wall clock time and date at job start Tue Mar 31 2020 14:11:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50698 * 109.46884 * 2 1
4 4 N 1.31307 * 118.90777 * 94.93806 * 3 2 1
5 5 C 1.33861 * 121.03399 * 180.02562 * 4 3 2
6 6 S 1.75752 * 131.28715 * 180.02562 * 5 4 3
7 7 C 1.75360 * 92.18368 * 179.97438 * 6 5 4
8 8 C 1.31896 * 111.40038 * 0.02562 * 7 6 5
9 9 C 1.39809 * 119.10023 * 359.97438 * 5 4 3
10 10 C 1.41806 * 117.54684 * 0.03972 * 9 5 4
11 11 N 1.38526 * 120.53164 * 179.97438 * 10 9 5
12 12 C 1.38439 * 119.99817 * 176.75709 * 11 10 9
13 13 C 1.38947 * 120.00238 * 300.73006 * 12 11 10
14 14 H 1.07997 * 120.00039 * 152.44426 * 13 12 11
15 15 C 1.40863 * 119.99666 * 332.44019 * 13 12 11
16 16 N 1.30316 * 120.00277 * 1.95412 * 15 13 12
17 17 Si 1.86808 * 119.99838 * 181.95239 * 15 13 12
18 18 H 1.48495 * 109.46891 * 0.02562 * 17 15 13
19 19 H 1.48493 * 109.47068 * 120.00028 * 17 15 13
20 20 H 1.48504 * 109.46705 * 240.00229 * 17 15 13
21 21 C 1.41138 * 119.99973 * 120.72743 * 12 11 10
22 22 C 1.43195 * 120.00062 * 174.62685 * 21 12 11
23 23 N 7.25143 * 86.19921 * 291.32661 * 2 1 3
24 24 C 1.43203 * 120.00196 * 354.63253 * 21 12 11
25 25 N 7.03999 * 77.04991 * 326.81142 * 2 1 3
26 26 N 1.32066 * 118.90674 * 275.28374 * 3 2 1
27 27 H 1.08995 * 109.47211 * 60.00017 * 1 2 3
28 28 H 1.09004 * 109.46435 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.46990 * 299.99650 * 1 2 3
30 30 H 1.09004 * 109.47405 * 240.00289 * 2 1 3
31 31 H 1.08998 * 109.47689 * 120.00162 * 2 1 3
32 32 H 1.08004 * 124.29401 * 179.97438 * 7 6 5
33 33 H 1.08005 * 122.58920 * 180.02562 * 8 7 6
34 34 H 0.96999 * 120.00440 * 356.75573 * 11 10 9
35 35 H 0.97003 * 120.00171 * 185.01065 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.3371 1.9863 1.1452
5 6 2.7865 3.2462 1.1947
6 16 3.2674 4.2534 2.5524
7 6 3.6483 5.6046 1.5015
8 6 3.4262 5.3075 0.2358
9 6 2.9311 3.9639 0.0036
10 6 2.5873 3.3057 -1.2045
11 7 2.7062 3.9589 -2.4203
12 6 2.4319 3.2848 -3.5979
13 6 3.1524 2.1439 -3.9295
14 1 2.7035 1.3834 -4.5511
15 6 4.4684 1.9793 -3.4548
16 7 4.9966 2.8788 -2.6736
17 14 5.4564 0.4716 -3.9450
18 1 4.6356 -0.3910 -4.8323
19 1 6.6833 0.8967 -4.6656
20 1 5.8358 -0.2889 -2.7273
21 6 1.4203 3.7564 -4.4618
22 6 1.2136 3.1287 -5.7321
23 7 1.0493 2.6314 -6.7400
24 6 0.6006 4.8626 -4.0679
25 7 -0.0477 5.7417 -3.7556
26 7 2.1447 2.0582 -1.1512
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3632 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.8934 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 4.0170 6.5592 1.8471
33 1 3.6009 6.0098 -0.5659
34 1 2.9817 4.8885 -2.4465
35 1 5.9258 2.8030 -2.4055
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001158214257.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:11:50
Heat of formation + Delta-G solvation = 106.820780 kcal
Electronic energy + Delta-G solvation = -24294.707589 eV
Core-core repulsion = 20804.488966 eV
Total energy + Delta-G solvation = -3490.218623 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 325.069 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.96987 -39.20280 -37.35338 -37.08270 -36.55874 -35.43652 -34.03467 -33.70589
-31.79151 -29.61589 -28.80167 -26.09966 -25.31526 -23.42935 -22.86454 -21.73282
-20.84127 -19.73970 -19.11428 -18.02625 -17.92305 -17.31506 -16.58589 -16.18465
-16.12403 -15.24931 -15.22188 -14.89948 -14.70819 -14.59324 -14.40336 -13.98004
-13.91925 -13.58319 -13.51250 -13.44630 -13.37944 -13.24717 -12.94357 -12.74024
-12.60262 -12.50700 -12.25373 -11.97676 -11.96032 -11.90602 -11.67524 -11.52704
-10.56494 -10.03091 -9.80900 -9.42376 -9.13309 -8.54368 -7.12926 -0.34999
0.15073 0.27461 0.73835 0.99507 1.32774 1.34161 1.47104 1.51208
1.99248 2.05513 2.11390 2.20930 2.52028 2.65345 2.92980 3.17317
3.39178 3.54015 3.68535 3.83787 3.94877 4.20014 4.40262 4.46254
4.56146 4.58479 4.67558 4.77106 5.01643 5.05015 5.14408 5.23291
5.26239 5.38312 5.43025 5.67198 5.86831 6.07666 6.17627 6.55857
6.72491 7.14382 7.31514 7.44845 7.69547
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.009903 B = 0.005682 C = 0.005122
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2826.734473 B = 4926.684557 C = 5465.038934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.049 4.049
3 C 0.361 3.639
4 N -0.556 5.556
5 C 0.089 3.911
6 S 0.164 5.836
7 C -0.203 4.203
8 C -0.095 4.095
9 C -0.249 4.249
10 C 0.516 3.484
11 N -0.613 5.613
12 C 0.375 3.625
13 C -0.345 4.345
14 H 0.104 0.896
15 C 0.049 3.951
16 N -0.734 5.734
17 Si 0.979 3.021
18 H -0.253 1.253
19 H -0.254 1.254
20 H -0.262 1.262
21 C -0.318 4.318
22 C 0.331 3.669
23 N -0.553 5.553
24 C 0.314 3.686
25 N -0.554 5.554
26 N -0.576 5.576
27 H 0.042 0.958
28 H 0.092 0.908
29 H 0.049 0.951
30 H 0.094 0.906
31 H 0.101 0.899
32 H 0.209 0.791
33 H 0.157 0.843
34 H 0.413 0.587
35 H 0.310 0.690
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.785 -2.033 12.428 14.304
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.088 4.088
3 C 0.088 3.912
4 N -0.279 5.279
5 C -0.160 4.160
6 S 0.421 5.579
7 C -0.337 4.337
8 C -0.125 4.125
9 C -0.267 4.267
10 C 0.265 3.735
11 N -0.236 5.236
12 C 0.271 3.729
13 C -0.372 4.372
14 H 0.122 0.878
15 C -0.180 4.180
16 N -0.353 5.353
17 Si 0.798 3.202
18 H -0.176 1.176
19 H -0.178 1.178
20 H -0.187 1.187
21 C -0.338 4.338
22 C 0.024 3.976
23 N -0.236 5.236
24 C 0.008 3.992
25 N -0.237 5.237
26 N -0.302 5.302
27 H 0.061 0.939
28 H 0.110 0.890
29 H 0.068 0.932
30 H 0.112 0.888
31 H 0.120 0.880
32 H 0.225 0.775
33 H 0.174 0.826
34 H 0.252 0.748
35 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 5.448 -2.483 13.022 14.333
hybrid contribution 1.033 0.956 -1.688 2.198
sum 6.480 -1.528 11.334 13.145
Atomic orbital electron populations
1.21606 0.92845 1.03460 1.01224 1.20425 0.97268 0.86489 1.04656
1.23423 0.88558 0.97433 0.81737 1.67864 1.20694 1.09375 1.29984
1.24093 0.99025 0.95108 0.97764 1.83780 1.67007 1.02464 1.04683
1.25405 1.08741 1.03997 0.95532 1.20678 1.00118 0.93332 0.98334
1.20280 1.14167 0.98559 0.93712 1.18144 0.83715 0.87416 0.84214
1.41322 1.67477 1.13468 1.01314 1.16699 0.86068 0.88407 0.81742
1.20333 0.96097 1.02094 1.18674 0.87802 1.27066 0.99090 1.00277
0.91609 1.69449 1.16172 1.31653 1.18064 0.85112 0.78338 0.77078
0.79680 1.17598 1.17782 1.18659 1.12933 1.15028 1.09704 0.96094
1.24757 0.90803 0.90965 0.91044 1.81034 1.13895 1.14637 1.14032
1.25328 0.90997 0.91230 0.91602 1.81063 1.14721 1.16393 1.11565
1.67772 1.23745 1.08347 1.30339 0.93883 0.88971 0.93214 0.88797
0.88040 0.77455 0.82579 0.74786 0.87814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.32 9.89 71.98 0.71 -2.61 16
2 C -0.05 -1.36 6.36 29.85 0.19 -1.17 16
3 C 0.36 12.92 6.89 138.81 0.96 13.88 16
4 N -0.56 -19.96 10.36 -183.86 -1.90 -21.86 16
5 C 0.09 3.05 7.70 84.76 0.65 3.70 16
6 S 0.16 4.08 23.23 -56.49 -1.31 2.77 16
7 C -0.20 -4.38 11.02 66.98 0.74 -3.64 16
8 C -0.09 -2.56 10.03 23.18 0.23 -2.33 16
9 C -0.25 -8.63 6.08 -20.27 -0.12 -8.75 16
10 C 0.52 19.85 6.07 133.87 0.81 20.66 16
11 N -0.61 -23.32 3.30 -182.99 -0.60 -23.93 16
12 C 0.37 15.48 5.48 38.98 0.21 15.70 16
13 C -0.34 -13.99 7.52 23.08 0.17 -13.82 16
14 H 0.10 4.36 7.28 -2.91 -0.02 4.34 16
15 C 0.05 1.80 5.30 85.56 0.45 2.26 16
16 N -0.73 -26.61 10.92 21.98 0.24 -26.37 16
17 Si 0.98 29.60 29.57 68.60 2.03 31.63 16
18 H -0.25 -7.92 7.11 99.48 0.71 -7.21 16
19 H -0.25 -7.31 7.11 99.48 0.71 -6.60 16
20 H -0.26 -7.87 7.11 99.48 0.71 -7.16 16
21 C -0.32 -13.94 5.88 -20.08 -0.12 -14.06 16
22 C 0.33 15.17 14.05 88.33 1.24 16.41 16
23 N -0.55 -26.21 18.54 19.00 0.35 -25.86 16
24 C 0.31 14.17 14.82 88.33 1.31 15.48 16
25 N -0.55 -25.84 18.54 19.01 0.35 -25.49 16
26 N -0.58 -22.76 8.93 -184.15 -1.64 -24.41 16
27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16
28 H 0.09 1.73 8.14 -2.38 -0.02 1.72 16
29 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16
30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16
31 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16
32 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16
33 H 0.16 3.69 7.70 -2.91 -0.02 3.66 16
34 H 0.41 14.52 8.18 -92.71 -0.76 13.76 16
35 H 0.31 10.16 8.29 -92.71 -0.77 9.39 16
Total: -1.00 -55.20 342.01 5.39 -49.82
By element:
Atomic # 1 Polarization: 21.56 SS G_CDS: 0.43 Total: 21.99 kcal
Atomic # 6 Polarization: 34.27 SS G_CDS: 7.44 Total: 41.71 kcal
Atomic # 7 Polarization: -144.71 SS G_CDS: -3.21 Total: -147.92 kcal
Atomic # 14 Polarization: 29.60 SS G_CDS: 2.03 Total: 31.63 kcal
Atomic # 16 Polarization: 4.08 SS G_CDS: -1.31 Total: 2.77 kcal
Total: -55.20 5.39 -49.82 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001158214257.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 156.638 kcal
(2) G-P(sol) polarization free energy of solvation -55.202 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.436 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) 106.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds