Wall clock time and date at job start Tue Mar 31 2020 13:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99850 * 2 1 4 4 H 1.48499 * 109.47213 * 270.00493 * 3 2 1 5 5 H 1.48500 * 109.46777 * 30.00624 * 3 2 1 6 6 H 1.48498 * 109.46790 * 150.00220 * 3 2 1 7 7 C 1.37879 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99186 * 180.02562 * 7 2 1 9 9 C 1.50688 * 120.00231 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.53410 * 299.90083 * 9 7 2 11 11 C 1.53117 * 109.50895 * 59.99906 * 9 7 2 12 12 C 1.53120 * 109.16225 * 177.59345 * 11 9 7 13 13 C 1.53038 * 109.28120 * 302.34726 * 12 11 9 14 14 N 1.46846 * 109.52235 * 59.18025 * 13 12 11 15 15 C 1.38538 * 110.99974 * 174.16040 * 14 13 12 16 16 N 1.32510 * 120.12087 * 36.57449 * 15 14 13 17 17 C 1.31875 * 120.27414 * 180.02562 * 16 15 14 18 18 Cl 1.73600 * 119.26587 * 180.02562 * 17 16 15 19 19 N 1.31386 * 121.46728 * 0.28826 * 17 16 15 20 20 C 1.33887 * 121.92072 * 359.41008 * 19 17 16 21 21 C 1.37055 * 118.54005 * 0.57336 * 20 19 17 22 22 C 1.52091 * 115.80876 * 179.74711 * 21 20 19 23 23 S 1.83286 * 103.45177 * 17.40161 * 22 21 20 24 24 C 1.52174 * 125.75194 * 180.28488 * 20 19 17 25 25 C 1.46849 * 111.19709 * 298.25945 * 14 13 12 26 26 H 0.97000 * 120.00343 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.52109 * 57.68918 * 11 9 7 28 28 H 1.09001 * 109.52408 * 297.50789 * 11 9 7 29 29 H 1.09006 * 109.49784 * 182.40708 * 12 11 9 30 30 H 1.09000 * 109.50416 * 62.29174 * 12 11 9 31 31 H 1.09000 * 109.46212 * 299.16173 * 13 12 11 32 32 H 1.09002 * 109.45217 * 179.19012 * 13 12 11 33 33 H 1.08998 * 110.62436 * 135.89363 * 22 21 20 34 34 H 1.09007 * 110.62290 * 258.90995 * 22 21 20 35 35 H 1.09001 * 110.61817 * 281.36307 * 24 20 19 36 36 H 1.09002 * 110.62190 * 44.36680 * 24 20 19 37 37 H 1.08997 * 109.46407 * 181.75977 * 25 14 13 38 38 H 1.09002 * 109.46035 * 301.72629 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6257 -2.5589 0.8903 11 6 0.3700 -2.5808 -1.2501 12 6 -0.3456 -3.9343 -1.2728 13 6 0.6945 -5.0565 -1.2415 14 7 1.5113 -4.9348 -0.0272 15 6 2.3766 -6.0093 0.0988 16 7 2.9390 -6.5400 -0.9773 17 6 3.7628 -7.5632 -0.8609 18 17 4.4854 -8.2375 -2.2880 19 7 4.0448 -8.0868 0.3106 20 6 3.5228 -7.6050 1.4455 21 6 2.6613 -6.5417 1.3704 22 6 2.1008 -6.0487 2.6955 23 16 3.2390 -6.7734 3.9359 24 6 3.7931 -8.1379 2.8450 25 6 2.2449 -3.6629 -0.0060 26 1 -0.4850 0.8400 0.0004 27 1 0.9908 -2.4820 -2.1407 28 1 -0.3679 -1.7789 -1.2286 29 1 -0.9414 -4.0156 -2.1820 30 1 -0.9961 -4.0167 -0.4021 31 1 1.3359 -4.9817 -2.1197 32 1 0.1876 -6.0214 -1.2431 33 1 2.1255 -4.9600 2.7416 34 1 1.0858 -6.4174 2.8441 35 1 3.2099 -9.0396 3.0317 36 1 4.8568 -8.3320 2.9831 37 1 2.8643 -3.6158 0.8896 38 1 2.8791 -3.5947 -0.8900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:43 Heat of formation + Delta-G solvation = 51.283959 kcal Electronic energy + Delta-G solvation = -23251.838702 eV Core-core repulsion = 19860.319316 eV Total energy + Delta-G solvation = -3391.519386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58652 -38.56737 -37.13064 -35.21307 -34.52202 -32.78384 -31.11003 -30.13407 -29.39593 -27.27914 -25.13140 -24.21778 -23.06100 -21.91743 -21.45165 -19.13369 -18.21734 -17.64495 -16.49984 -16.19971 -15.88755 -15.37449 -14.97866 -14.70696 -14.43438 -14.25110 -13.86048 -13.72563 -13.54330 -12.94341 -12.68515 -12.54751 -12.24641 -11.90983 -11.85618 -11.67528 -11.48693 -11.03863 -10.99926 -10.90988 -10.78784 -10.56310 -10.26816 -9.97801 -9.74612 -9.68355 -9.39842 -9.21647 -8.91084 -8.46939 -8.32636 -7.99193 -6.08902 -4.15958 0.47037 0.66967 1.12491 1.47377 1.88329 3.25357 3.25642 3.32978 3.35751 3.47805 3.54578 4.23853 4.35157 4.38220 4.58257 4.84358 4.86314 5.14114 5.21817 5.22523 5.40474 5.52793 5.61853 5.74634 5.88534 6.02969 6.13182 6.27800 6.42253 6.52742 6.56764 6.70109 6.90165 7.14307 7.22031 7.42740 7.63228 7.64378 7.87794 8.00737 8.30309 8.86592 9.49452 10.97032 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.004123 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.110864 B = 6788.723276 C = 7870.988710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.058 3.942 10 H 0.039 0.961 11 C -0.114 4.114 12 C -0.118 4.118 13 C 0.066 3.934 14 N -0.481 5.481 15 C 0.405 3.595 16 N -0.532 5.532 17 C 0.387 3.613 18 Cl 0.024 6.976 19 N -0.517 5.517 20 C 0.181 3.819 21 C -0.182 4.182 22 C -0.010 4.010 23 S -0.241 6.241 24 C -0.025 4.025 25 C 0.074 3.926 26 H 0.261 0.739 27 H 0.035 0.965 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 -16.066 2.030 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.040 3.960 10 H 0.057 0.943 11 C -0.152 4.152 12 C -0.156 4.156 13 C -0.061 4.061 14 N -0.203 5.203 15 C 0.163 3.837 16 N -0.254 5.254 17 C 0.091 3.909 18 Cl 0.052 6.948 19 N -0.236 5.236 20 C 0.038 3.962 21 C -0.190 4.190 22 C -0.158 4.158 23 S -0.014 6.014 24 C -0.174 4.174 25 C -0.050 4.050 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.084 0.916 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.047 -16.031 2.676 16.749 hybrid contribution 0.403 0.760 -1.473 1.706 sum 4.450 -15.271 1.203 15.951 Atomic orbital electron populations 1.69871 1.05844 1.26605 1.50107 1.24897 0.94836 0.98998 0.94785 0.86599 0.79905 0.83398 0.78156 1.20667 1.21139 1.19898 1.21037 0.92864 0.90268 1.51557 0.92705 1.18705 0.92312 0.89682 0.95343 0.94336 1.21711 1.00205 0.94764 0.98500 1.21723 0.96943 0.96021 1.00877 1.22100 0.95123 0.99280 0.89577 1.60065 1.19301 1.01081 1.39854 1.20256 0.86176 0.91010 0.86257 1.68212 1.10687 1.12090 1.34364 1.22516 0.91263 0.89179 0.87970 1.98434 1.80433 1.82930 1.32991 1.67214 1.26958 1.32511 0.96880 1.21795 0.90605 0.90493 0.93269 1.21669 1.01800 0.99169 0.96396 1.22709 0.99837 1.05555 0.87722 1.88052 1.56099 1.33858 1.23370 1.22840 1.07102 0.99654 0.87766 1.22575 0.96848 0.85378 1.00221 0.92867 0.94655 0.88597 0.92643 0.91866 0.92910 0.92175 0.85358 0.86667 0.86154 0.85519 0.91635 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 11.35 55.43 0.63 -23.32 16 2 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.39 8.56 -34.45 -0.29 -13.69 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.06 1.34 2.26 -91.70 -0.21 1.14 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.49 5.02 -26.61 -0.13 -2.63 16 12 C -0.12 -2.10 6.09 -26.65 -0.16 -2.27 16 13 C 0.07 1.11 4.93 -3.83 -0.02 1.09 16 14 N -0.48 -8.32 4.39 -172.81 -0.76 -9.08 16 15 C 0.41 6.57 5.60 -154.76 -0.87 5.70 16 16 N -0.53 -8.77 9.34 -10.80 -0.10 -8.87 16 17 C 0.39 5.85 8.18 -92.43 -0.76 5.09 16 18 Cl 0.02 0.31 29.27 -51.86 -1.52 -1.21 16 19 N -0.52 -7.41 10.38 -7.59 -0.08 -7.49 16 20 C 0.18 2.37 7.04 -81.39 -0.57 1.79 16 21 C -0.18 -2.57 5.96 -103.41 -0.62 -3.19 16 22 C -0.01 -0.12 7.10 36.69 0.26 0.14 16 23 S -0.24 -2.73 23.44 -107.50 -2.52 -5.25 16 24 C -0.03 -0.24 7.39 36.74 0.27 0.03 16 25 C 0.07 1.46 4.62 -3.83 -0.02 1.44 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.10 2.37 6.15 -51.93 -0.32 2.05 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 32 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -26.78 336.59 -12.42 -39.20 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.91 Total: -0.85 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.21 Total: -3.68 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.31 Total: -48.76 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.52 Total: -5.25 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.78 -12.42 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.482 kcal (2) G-P(sol) polarization free energy of solvation -26.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds