Wall clock time and date at job start Tue Mar 31 2020 13:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99850 * 2 1 4 4 H 1.48499 * 109.47213 * 270.00493 * 3 2 1 5 5 H 1.48500 * 109.46777 * 30.00624 * 3 2 1 6 6 H 1.48498 * 109.46790 * 150.00220 * 3 2 1 7 7 C 1.37879 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99186 * 180.02562 * 7 2 1 9 9 C 1.50688 * 120.00231 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.53410 * 299.90083 * 9 7 2 11 11 C 1.53117 * 109.50895 * 59.99906 * 9 7 2 12 12 C 1.53120 * 109.16225 * 177.59345 * 11 9 7 13 13 C 1.53038 * 109.28120 * 302.34726 * 12 11 9 14 14 N 1.46846 * 109.52235 * 59.18025 * 13 12 11 15 15 C 1.38538 * 110.99974 * 174.16040 * 14 13 12 16 16 N 1.32510 * 120.12087 * 36.57449 * 15 14 13 17 17 C 1.31875 * 120.27414 * 180.02562 * 16 15 14 18 18 Cl 1.73600 * 119.26587 * 180.02562 * 17 16 15 19 19 N 1.31386 * 121.46728 * 0.28826 * 17 16 15 20 20 C 1.33887 * 121.92072 * 359.41008 * 19 17 16 21 21 C 1.37055 * 118.54005 * 0.57336 * 20 19 17 22 22 C 1.52091 * 115.80876 * 179.74711 * 21 20 19 23 23 S 1.83286 * 103.45177 * 17.40161 * 22 21 20 24 24 C 1.52174 * 125.75194 * 180.28488 * 20 19 17 25 25 C 1.46849 * 111.19709 * 298.25945 * 14 13 12 26 26 H 0.97000 * 120.00343 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.52109 * 57.68918 * 11 9 7 28 28 H 1.09001 * 109.52408 * 297.50789 * 11 9 7 29 29 H 1.09006 * 109.49784 * 182.40708 * 12 11 9 30 30 H 1.09000 * 109.50416 * 62.29174 * 12 11 9 31 31 H 1.09000 * 109.46212 * 299.16173 * 13 12 11 32 32 H 1.09002 * 109.45217 * 179.19012 * 13 12 11 33 33 H 1.08998 * 110.62436 * 135.89363 * 22 21 20 34 34 H 1.09007 * 110.62290 * 258.90995 * 22 21 20 35 35 H 1.09001 * 110.61817 * 281.36307 * 24 20 19 36 36 H 1.09002 * 110.62190 * 44.36680 * 24 20 19 37 37 H 1.08997 * 109.46407 * 181.75977 * 25 14 13 38 38 H 1.09002 * 109.46035 * 301.72629 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6257 -2.5589 0.8903 11 6 0.3700 -2.5808 -1.2501 12 6 -0.3456 -3.9343 -1.2728 13 6 0.6945 -5.0565 -1.2415 14 7 1.5113 -4.9348 -0.0272 15 6 2.3766 -6.0093 0.0988 16 7 2.9390 -6.5400 -0.9773 17 6 3.7628 -7.5632 -0.8609 18 17 4.4854 -8.2375 -2.2880 19 7 4.0448 -8.0868 0.3106 20 6 3.5228 -7.6050 1.4455 21 6 2.6613 -6.5417 1.3704 22 6 2.1008 -6.0487 2.6955 23 16 3.2390 -6.7734 3.9359 24 6 3.7931 -8.1379 2.8450 25 6 2.2449 -3.6629 -0.0060 26 1 -0.4850 0.8400 0.0004 27 1 0.9908 -2.4820 -2.1407 28 1 -0.3679 -1.7789 -1.2286 29 1 -0.9414 -4.0156 -2.1820 30 1 -0.9961 -4.0167 -0.4021 31 1 1.3359 -4.9817 -2.1197 32 1 0.1876 -6.0214 -1.2431 33 1 2.1255 -4.9600 2.7416 34 1 1.0858 -6.4174 2.8441 35 1 3.2099 -9.0396 3.0317 36 1 4.8568 -8.3320 2.9831 37 1 2.8643 -3.6158 0.8896 38 1 2.8791 -3.5947 -0.8900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:43 Heat of formation + Delta-G solvation = 38.216615 kcal Electronic energy + Delta-G solvation = -23252.405345 eV Core-core repulsion = 19860.319316 eV Total energy + Delta-G solvation = -3392.086029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.75209 -40.00627 -38.19892 -36.47738 -35.89238 -34.42626 -32.53178 -31.85419 -30.33990 -28.41583 -27.01411 -25.58898 -24.20336 -23.37205 -22.91256 -20.67804 -19.47811 -18.99649 -18.09847 -17.33752 -17.06217 -16.72785 -16.40971 -16.01235 -15.81792 -15.43562 -15.23507 -14.92770 -14.61991 -14.45681 -14.39517 -14.09915 -13.47181 -13.10520 -12.97085 -12.86981 -12.78240 -12.68927 -12.63153 -12.55632 -12.09844 -11.90871 -11.78540 -11.59964 -11.42356 -11.17629 -10.79871 -10.66880 -10.54216 -10.37247 -9.76985 -8.86654 -8.09964 -6.23275 -0.65513 -0.48299 0.06132 0.57446 0.96339 1.41613 1.43818 1.52404 2.08982 2.28467 2.44923 2.48009 3.17277 3.18524 3.26554 3.42302 3.72981 4.02418 4.13542 4.17164 4.22858 4.28578 4.34736 4.45540 4.51513 4.55937 4.73006 4.81822 4.84678 4.97258 5.05165 5.20043 5.40810 5.45985 5.62330 5.68179 5.94361 6.00020 6.11240 6.35487 6.48071 6.86003 7.44720 8.94581 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.004123 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.110864 B = 6788.723276 C = 7870.988710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.059 3.941 10 H 0.014 0.986 11 C -0.107 4.107 12 C -0.107 4.107 13 C 0.072 3.928 14 N -0.479 5.479 15 C 0.386 3.614 16 N -0.549 5.549 17 C 0.375 3.625 18 Cl 0.041 6.959 19 N -0.515 5.515 20 C 0.184 3.816 21 C -0.184 4.184 22 C -0.008 4.008 23 S -0.245 6.245 24 C -0.014 4.014 25 C 0.093 3.907 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.064 0.936 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 -17.802 2.608 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.067 0.933 9 C 0.041 3.959 10 H 0.032 0.968 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.054 4.054 14 N -0.201 5.201 15 C 0.145 3.855 16 N -0.271 5.271 17 C 0.079 3.921 18 Cl 0.069 6.931 19 N -0.234 5.234 20 C 0.041 3.959 21 C -0.192 4.192 22 C -0.157 4.157 23 S -0.018 6.018 24 C -0.163 4.163 25 C -0.032 4.032 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.082 0.918 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.768 -17.784 3.253 18.697 hybrid contribution 0.235 1.225 -1.643 2.062 sum 5.003 -16.559 1.610 17.373 Atomic orbital electron populations 1.69991 1.06904 1.27193 1.50722 1.25575 0.95588 1.01875 0.94617 0.85708 0.78833 0.79901 0.78125 1.20382 1.20770 1.19544 1.21380 0.92859 0.91892 1.51437 0.93308 1.18575 0.92571 0.90131 0.94671 0.96829 1.21515 0.99303 0.96352 0.97323 1.21603 0.97015 0.93922 1.01958 1.22034 0.94626 0.99631 0.89113 1.59954 1.19546 1.00450 1.40131 1.20244 0.86991 0.91101 0.87201 1.68124 1.11327 1.12802 1.34806 1.22759 0.91297 0.89141 0.88880 1.98435 1.80014 1.82541 1.32132 1.67333 1.26742 1.32299 0.96979 1.22342 0.89411 0.89821 0.94294 1.21858 1.01793 0.99333 0.96198 1.22670 1.00944 1.04767 0.87306 1.88125 1.55907 1.34688 1.23108 1.23038 1.08795 0.99635 0.84783 1.22129 0.95713 0.85975 0.99376 0.92901 0.95830 0.91526 0.90453 0.91947 0.93800 0.90108 0.86907 0.85222 0.83208 0.83588 0.91761 0.95736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.27 11.35 21.45 0.24 -50.02 16 2 C 0.02 1.24 5.30 84.65 0.45 1.69 16 3 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -28.47 8.56 25.60 0.22 -28.26 16 8 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 9 C 0.06 2.82 2.26 -11.49 -0.03 2.79 16 10 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 11 C -0.11 -4.80 5.02 30.67 0.15 -4.65 16 12 C -0.11 -3.80 6.09 30.65 0.19 -3.61 16 13 C 0.07 2.39 4.93 86.33 0.43 2.82 16 14 N -0.48 -16.48 4.39 -700.66 -3.08 -19.56 16 15 C 0.39 12.20 5.60 133.59 0.75 12.95 16 16 N -0.55 -17.59 9.34 -188.07 -1.76 -19.35 16 17 C 0.38 10.80 8.18 180.98 1.48 12.28 16 18 Cl 0.04 0.99 29.27 -2.72 -0.08 0.91 16 19 N -0.51 -13.64 10.38 -177.93 -1.85 -15.49 16 20 C 0.18 4.38 7.04 42.44 0.30 4.68 16 21 C -0.18 -4.92 5.96 -19.08 -0.11 -5.03 16 22 C -0.01 -0.19 7.10 71.68 0.51 0.32 16 23 S -0.25 -5.02 23.44 -56.49 -1.32 -6.34 16 24 C -0.01 -0.23 7.39 71.71 0.53 0.30 16 25 C 0.09 3.77 4.62 86.33 0.40 4.16 16 26 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.07 3.40 6.15 -2.39 -0.01 3.38 16 29 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.53 7.81 -2.39 -0.02 1.52 16 32 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 33 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 2.57 8.10 -2.39 -0.02 2.55 16 38 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -58.03 336.59 0.53 -57.50 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.08 Total: 7.42 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.26 Total: 0.43 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -6.44 Total: -104.42 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -1.32 Total: -6.34 kcal Atomic # 17 Polarization: 0.99 SS G_CDS: -0.08 Total: 0.91 kcal Total: -58.03 0.53 -57.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.718 kcal (2) G-P(sol) polarization free energy of solvation -58.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds